Wall clock time and date at job start Tue Mar 31 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47099 * 53.13181 * 3 2 1 5 5 S 1.65600 * 119.99655 * 164.99927 * 4 3 2 6 6 O 1.42094 * 106.40190 * 311.45766 * 5 4 3 7 7 O 1.42098 * 106.39975 * 178.54215 * 5 4 3 8 8 C 1.76192 * 107.22000 * 65.00180 * 5 4 3 9 9 C 1.38398 * 119.92650 * 270.25346 * 8 5 4 10 10 C 1.38359 * 120.30976 * 180.25559 * 9 8 5 11 11 C 1.37955 * 120.14879 * 359.48949 * 10 9 8 12 12 C 1.39637 * 119.84505 * 0.25337 * 11 10 9 13 13 C 1.47726 * 120.14536 * 179.97438 * 12 11 10 14 14 O 1.21595 * 119.99832 * 135.83844 * 13 12 11 15 15 N 1.34773 * 120.00220 * 315.82376 * 13 12 11 16 16 C 1.36869 * 120.00285 * 184.72635 * 15 13 12 17 17 H 1.08000 * 120.00116 * 134.00732 * 16 15 13 18 18 C 1.39051 * 119.99767 * 314.00623 * 16 15 13 19 19 N 1.31365 * 119.99741 * 166.84822 * 18 16 15 20 20 Si 1.86803 * 120.00233 * 346.84949 * 18 16 15 21 21 H 1.48497 * 109.47192 * 95.88652 * 20 18 16 22 22 H 1.48495 * 109.47058 * 215.89234 * 20 18 16 23 23 H 1.48506 * 109.46559 * 335.88834 * 20 18 16 24 24 C 1.46502 * 119.99804 * 4.72700 * 15 13 12 25 25 C 1.53007 * 117.49791 * 182.89993 * 24 15 13 26 26 C 1.53006 * 117.49613 * 114.27774 * 24 15 13 27 27 C 1.37913 * 119.92788 * 89.99904 * 8 5 4 28 28 H 4.40646 * 5.51419 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47264 * 293.13520 * 3 2 1 30 30 H 1.08991 * 109.46868 * 173.13092 * 3 2 1 31 31 H 0.96999 * 120.00186 * 345.00113 * 4 3 2 32 32 H 1.08000 * 119.84346 * 359.97438 * 9 8 5 33 33 H 1.07995 * 119.92445 * 179.76222 * 10 9 8 34 34 H 1.07998 * 120.07731 * 180.27769 * 11 10 9 35 35 H 0.97006 * 119.99365 * 179.97438 * 19 18 16 36 36 H 1.08997 * 115.55168 * 328.60810 * 24 15 13 37 37 H 1.08998 * 117.49774 * 359.97438 * 25 24 15 38 38 H 1.09003 * 117.49554 * 145.02579 * 25 24 15 39 39 H 1.09001 * 117.49611 * 214.98042 * 26 24 15 40 40 H 1.08995 * 117.50116 * 359.97438 * 26 24 15 41 41 H 1.08003 * 120.07752 * 0.02562 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.8278 -1.1050 5 16 4.7168 -0.7214 -1.5828 6 8 5.0006 0.6636 -1.7254 7 8 4.8819 -1.6610 -2.6359 8 6 5.7061 -1.2967 -0.2431 9 6 6.1463 -0.4075 0.7217 10 6 6.9279 -0.8497 1.7743 11 6 7.2650 -2.1836 1.8743 12 6 6.8199 -3.0873 0.9073 13 6 7.1774 -4.5171 1.0076 14 8 6.3339 -5.3701 0.8087 15 7 8.4385 -4.8762 1.3192 16 6 8.7940 -6.1979 1.3174 17 1 9.7126 -6.5094 0.8425 18 6 7.9724 -7.1396 1.9272 19 7 8.1677 -8.4204 1.7100 20 14 6.5911 -6.5834 3.0550 21 1 5.3209 -6.5208 2.2883 22 1 6.4468 -7.5488 4.1741 23 1 6.9077 -5.2384 3.5992 24 6 9.4288 -3.8517 1.6597 25 6 10.8597 -4.3171 1.9377 26 6 9.9721 -3.8422 3.0901 27 6 6.0357 -2.6330 -0.1554 28 1 -1.0498 -0.0003 -0.0001 29 1 3.0096 -0.4029 0.9450 30 1 3.0089 1.0210 -0.1229 31 1 2.5317 -1.4387 -1.5568 32 1 5.8822 0.6373 0.6502 33 1 7.2712 -0.1497 2.5216 34 1 7.8715 -2.5283 2.6988 35 1 7.5948 -9.0773 2.1357 36 1 9.2995 -2.8896 1.1640 37 1 11.0640 -5.3854 1.8677 38 1 11.6720 -3.6610 1.6248 39 1 10.2005 -2.8738 3.5352 40 1 9.5924 -4.5978 3.7777 41 1 5.6884 -3.3266 -0.9069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058281987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:29 Heat of formation + Delta-G solvation = 29.826705 kcal Electronic energy + Delta-G solvation = -28291.761369 eV Core-core repulsion = 24267.575991 eV Total energy + Delta-G solvation = -4024.185377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -40.05811 -38.22806 -37.42113 -36.57518 -36.34796 -36.00005 -33.11340 -32.59382 -31.99838 -31.24873 -30.93011 -26.83871 -25.62635 -23.68784 -23.01865 -22.02873 -21.48143 -20.07071 -19.65136 -19.04033 -18.36248 -17.45770 -16.80988 -16.51747 -16.37659 -15.96162 -15.50767 -15.43706 -14.94999 -14.64086 -14.48972 -13.99846 -13.94513 -13.60587 -13.53587 -13.34945 -12.89594 -12.55662 -12.42495 -12.29565 -12.25054 -12.19165 -11.90322 -11.54503 -11.25920 -11.15027 -10.95141 -10.85885 -10.78058 -10.42168 -10.17667 -10.16884 -9.83489 -9.78600 -9.36680 -9.06797 -8.73461 -8.63360 -7.65838 -6.32671 -4.16629 0.16912 0.72654 1.14510 2.20389 2.44015 2.95055 3.09370 3.35007 3.39995 3.57798 3.63046 3.78176 3.86962 4.10765 4.28274 4.33953 4.54118 4.73554 4.79390 4.83004 4.97323 5.06588 5.08776 5.22452 5.32007 5.32620 5.39060 5.47285 5.57582 5.59057 5.65214 5.83062 5.93397 6.02556 6.15235 6.21289 6.36800 6.52845 6.59381 6.74067 6.75891 7.17889 7.66891 7.82979 8.56624 8.67886 9.22661 9.57474 10.70009 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.003561 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.542834 B = 7861.945106 C = 8584.791601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.201 4.201 3 C 0.228 3.772 4 N -1.117 6.117 5 S 2.701 3.299 6 O -0.956 6.956 7 O -0.949 6.949 8 C -0.685 4.685 9 C -0.024 4.024 10 C -0.144 4.144 11 C -0.047 4.047 12 C -0.116 4.116 13 C 0.484 3.516 14 O -0.535 6.535 15 N -0.420 5.420 16 C -0.344 4.344 17 H 0.101 0.899 18 C 0.088 3.912 19 N -0.861 5.861 20 Si 0.928 3.072 21 H -0.257 1.257 22 H -0.312 1.312 23 H -0.284 1.284 24 C 0.054 3.946 25 C -0.167 4.167 26 C -0.200 4.200 27 C 0.024 3.976 28 H 0.222 0.778 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.423 0.577 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.275 0.725 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 19.440 1.009 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.202 4.202 3 C 0.103 3.897 4 N -0.877 5.877 5 S 2.791 3.209 6 O -0.946 6.946 7 O -0.939 6.939 8 C -0.773 4.773 9 C -0.044 4.044 10 C -0.163 4.163 11 C -0.066 4.066 12 C -0.121 4.121 13 C 0.275 3.725 14 O -0.419 6.419 15 N -0.138 5.138 16 C -0.469 4.469 17 H 0.119 0.881 18 C -0.122 4.122 19 N -0.494 5.494 20 Si 0.761 3.239 21 H -0.183 1.183 22 H -0.243 1.243 23 H -0.210 1.210 24 C -0.052 4.052 25 C -0.205 4.205 26 C -0.239 4.239 27 C 0.003 3.997 28 H 0.238 0.762 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.258 0.742 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.350 19.202 0.198 20.562 hybrid contribution -0.829 -0.441 1.246 1.561 sum -8.180 18.761 1.444 20.517 Atomic orbital electron populations 1.25017 0.95948 0.99426 0.98655 1.22735 0.94058 1.01553 1.01862 1.18143 0.85168 0.96190 0.90160 1.55630 1.29137 1.55081 1.47825 1.01692 0.71999 0.73795 0.73415 1.93577 1.83720 1.32107 1.85223 1.93633 1.84725 1.63674 1.51904 1.30696 1.21926 1.02895 1.21754 1.20950 0.93437 0.98566 0.91424 1.21195 1.00145 0.95779 0.99136 1.22013 0.94412 0.92906 0.97227 1.20478 0.99642 0.95493 0.96462 1.18172 0.84826 0.86885 0.82663 1.90589 1.47937 1.50491 1.52871 1.43021 1.06972 1.06086 1.57766 1.18844 1.10910 0.78906 1.38280 0.88121 1.25466 0.97282 0.94476 0.95008 1.69677 1.38721 1.00963 1.40071 0.85992 0.84059 0.76920 0.76978 1.18285 1.24262 1.21016 1.22013 0.91725 0.93723 0.97723 1.23169 0.92192 1.03434 1.01704 1.23347 1.05544 1.02446 0.92543 1.20933 0.90510 0.92884 0.95353 0.76156 0.89049 0.87777 0.74186 0.84242 0.84711 0.84096 0.91470 0.86809 0.86858 0.89217 0.89221 0.88356 0.83503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 19.25 29.55 0.57 -0.72 16 2 C -0.20 -1.77 13.49 -37.12 -0.50 -2.27 16 3 C 0.23 1.87 6.70 -6.83 -0.05 1.83 16 4 N -1.12 -10.67 5.98 -13.15 -0.08 -10.75 16 5 S 2.70 33.14 5.73 -107.50 -0.62 32.52 16 6 O -0.96 -12.81 16.75 -57.18 -0.96 -13.76 16 7 O -0.95 -14.86 17.27 -57.18 -0.99 -15.84 16 8 C -0.69 -9.19 5.94 -39.64 -0.24 -9.42 16 9 C -0.02 -0.27 9.52 -39.48 -0.38 -0.65 16 10 C -0.14 -1.66 10.03 -39.64 -0.40 -2.05 16 11 C -0.05 -0.70 7.58 -39.16 -0.30 -1.00 16 12 C -0.12 -2.18 5.18 -104.97 -0.54 -2.73 16 13 C 0.48 11.53 5.56 -12.39 -0.07 11.46 16 14 O -0.53 -14.79 12.06 5.28 0.06 -14.73 16 15 N -0.42 -9.88 2.46 -108.83 -0.27 -10.14 16 16 C -0.34 -9.35 8.54 -15.00 -0.13 -9.47 16 17 H 0.10 2.85 7.24 -52.49 -0.38 2.47 16 18 C 0.09 2.52 5.02 -17.45 -0.09 2.43 16 19 N -0.86 -25.62 13.95 55.50 0.77 -24.84 16 20 Si 0.93 24.43 24.44 -169.99 -4.15 20.27 16 21 H -0.26 -7.16 6.35 56.52 0.36 -6.80 16 22 H -0.31 -8.03 7.11 56.52 0.40 -7.63 16 23 H -0.28 -7.10 7.02 56.52 0.40 -6.70 16 24 C 0.05 0.97 4.41 -67.92 -0.30 0.67 16 25 C -0.17 -2.74 9.81 -26.72 -0.26 -3.00 16 26 C -0.20 -3.17 9.46 -26.72 -0.25 -3.42 16 27 C 0.02 0.40 9.15 -39.17 -0.36 0.04 16 28 H 0.22 0.88 7.80 -54.10 -0.42 0.46 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.71 7.75 -51.93 -0.40 0.31 16 31 H 0.42 3.59 8.63 -34.47 -0.30 3.30 16 32 H 0.14 1.16 7.61 -52.49 -0.40 0.76 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.14 2.06 5.73 -52.49 -0.30 1.75 16 35 H 0.28 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.11 1.80 6.19 -51.93 -0.32 1.48 16 37 H 0.11 2.13 6.62 -51.93 -0.34 1.79 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.15 2.58 7.61 -52.48 -0.40 2.18 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -37.08 362.87 -8.60 -45.68 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.56 Total: 4.44 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.28 Total: -18.31 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.43 Total: -45.74 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -1.88 Total: -44.34 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -4.15 Total: 20.27 kcal Atomic # 16 Polarization: 33.14 SS G_CDS: -0.62 Total: 32.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.08 -8.60 -45.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058281987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.511 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds