Wall clock time and date at job start Tue Mar 31 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42107 * 110.54211 * 2 1 4 4 O 1.42096 * 110.54711 * 223.25246 * 2 1 3 5 5 C 1.76198 * 104.45144 * 111.62649 * 2 1 3 6 6 N 1.30192 * 125.07753 * 270.29371 * 5 2 1 7 7 C 1.34895 * 109.74507 * 180.16042 * 6 5 2 8 8 C 1.46168 * 126.50816 * 179.85586 * 7 6 5 9 9 O 1.21829 * 119.99840 * 174.07811 * 8 7 6 10 10 N 1.34773 * 119.99781 * 354.07566 * 8 7 6 11 11 C 1.36933 * 119.99530 * 175.19958 * 10 8 7 12 12 H 1.08003 * 119.99702 * 224.26085 * 11 10 8 13 13 C 1.38922 * 120.00105 * 44.26124 * 11 10 8 14 14 N 1.31452 * 120.00008 * 18.74324 * 13 11 10 15 15 Si 1.86804 * 119.99698 * 198.74341 * 13 11 10 16 16 H 1.48502 * 109.46655 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47226 * 299.99789 * 15 13 11 18 18 H 1.48501 * 109.47062 * 60.00314 * 15 13 11 19 19 C 1.46494 * 120.00422 * 355.20096 * 10 8 7 20 20 C 1.53002 * 117.50239 * 184.07427 * 19 10 8 21 21 C 1.53007 * 117.49913 * 115.41410 * 19 10 8 22 22 C 1.40289 * 106.98431 * 359.59466 * 7 6 5 23 23 C 1.40083 * 133.58222 * 180.24117 * 22 7 6 24 24 C 1.36419 * 119.20806 * 180.02562 * 23 22 7 25 25 C 1.40344 * 119.55138 * 359.92256 * 24 23 22 26 26 C 1.35086 * 120.43080 * 0.05812 * 25 24 23 27 27 N 1.36282 * 125.07869 * 90.00099 * 5 2 1 28 28 H 1.09002 * 109.46988 * 308.37298 * 1 2 3 29 29 H 1.08999 * 109.47104 * 68.37555 * 1 2 3 30 30 H 1.08998 * 109.46789 * 188.37418 * 1 2 3 31 31 H 0.97002 * 119.99568 * 174.96790 * 14 13 11 32 32 H 1.09005 * 115.55245 * 329.75116 * 19 10 8 33 33 H 1.09003 * 117.49516 * 0.02562 * 20 19 10 34 34 H 1.08996 * 117.49952 * 145.02129 * 20 19 10 35 35 H 1.09000 * 117.50056 * 214.98243 * 21 19 10 36 36 H 1.08998 * 117.49666 * 359.97438 * 21 19 10 37 37 H 1.07998 * 120.39710 * 359.97438 * 23 22 7 38 38 H 1.08003 * 120.22577 * 179.97438 * 24 23 22 39 39 H 1.07994 * 119.78374 * 180.02562 * 25 24 23 40 40 H 1.07996 * 119.70101 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3128 -0.9691 -0.9117 5 6 2.2537 -0.6288 1.5861 6 7 2.4352 0.0941 2.6536 7 6 2.7650 -0.7013 3.6920 8 6 3.0514 -0.2720 5.0595 9 8 3.2325 -1.1016 5.9331 10 7 3.1151 1.0417 5.3540 11 6 3.2854 1.4449 6.6515 12 1 2.6933 2.2572 7.0466 13 6 4.2196 0.8091 7.4596 14 7 5.1809 0.0956 6.9167 15 14 4.1097 0.9684 9.3175 16 1 5.2150 0.2013 9.9462 17 1 4.2199 2.3992 9.6991 18 1 2.8065 0.4305 9.7842 19 6 3.0021 2.0381 4.2861 20 6 3.1775 3.5086 4.6705 21 6 1.7892 2.9704 4.3151 22 6 2.7752 -2.0193 3.2116 23 6 3.0353 -3.2614 3.8047 24 6 2.9609 -4.3912 3.0438 25 6 2.6246 -4.2896 1.6850 26 6 2.3766 -3.0833 1.1298 27 7 2.4492 -1.9451 1.8801 28 1 -0.3633 0.6380 0.8057 29 1 -0.3633 0.3787 -0.9553 30 1 -0.3633 -1.0167 0.1497 31 1 5.8750 -0.2878 7.4755 32 1 3.3732 1.7254 3.3100 33 1 3.3773 3.7346 5.7180 34 1 3.6636 4.1634 3.9473 35 1 1.3627 3.2712 3.3583 36 1 1.0752 2.8420 5.1286 37 1 3.2924 -3.3238 4.8518 38 1 3.1586 -5.3573 3.4841 39 1 2.5642 -5.1816 1.0792 40 1 2.1193 -3.0188 0.0830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058290221.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:21 Heat of formation + Delta-G solvation = 46.793534 kcal Electronic energy + Delta-G solvation = -29411.038540 eV Core-core repulsion = 25322.162989 eV Total energy + Delta-G solvation = -4088.875551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.093 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.66850 -38.46831 -37.45220 -37.08001 -36.13709 -35.85610 -33.35532 -32.66643 -31.10711 -30.70714 -29.81572 -28.37947 -25.35627 -24.00593 -23.05308 -22.85113 -21.45397 -20.82495 -19.80208 -19.05560 -18.18349 -16.76650 -16.74064 -16.59970 -16.06242 -15.93855 -15.75228 -15.63656 -15.28236 -14.66674 -14.24068 -14.17297 -13.58155 -13.55369 -13.45657 -13.15220 -12.70545 -12.43404 -12.31315 -12.25452 -12.06345 -11.99213 -11.76508 -11.40312 -11.21082 -11.10467 -10.88154 -10.84313 -10.63972 -10.43555 -10.34656 -10.10942 -9.77267 -9.44278 -9.23223 -8.74373 -8.12436 -7.56992 -6.96843 -6.10042 -3.84149 -0.20772 0.73687 0.97345 2.34953 2.50430 2.66567 3.30639 3.35045 3.38010 3.41322 3.71438 3.93034 4.23623 4.43018 4.49531 4.55437 4.62371 4.76296 4.76945 4.90365 5.04125 5.08072 5.11432 5.32981 5.37935 5.53623 5.64281 5.74880 5.97376 6.04163 6.07205 6.24773 6.28121 6.47389 6.51674 6.57275 6.73329 6.94015 7.08243 7.22484 7.59779 7.66852 8.29162 9.04263 9.16057 9.64138 10.28917 10.96826 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.004641 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.623925 B = 6032.080426 C = 7813.410017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.539 3.461 3 O -0.904 6.904 4 O -0.938 6.938 5 C -0.411 4.411 6 N -0.333 5.333 7 C 0.006 3.994 8 C 0.544 3.456 9 O -0.533 6.533 10 N -0.400 5.400 11 C -0.343 4.343 12 H 0.083 0.917 13 C 0.072 3.928 14 N -0.820 5.820 15 Si 0.915 3.085 16 H -0.286 1.286 17 H -0.277 1.277 18 H -0.274 1.274 19 C 0.083 3.917 20 C -0.183 4.183 21 C -0.200 4.200 22 C 0.086 3.914 23 C -0.051 4.051 24 C -0.123 4.123 25 C -0.122 4.122 26 C 0.030 3.970 27 N -0.313 5.313 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.265 0.735 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.198 -6.316 -14.402 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.711 3.289 3 O -0.900 6.900 4 O -0.935 6.935 5 C -0.737 4.737 6 N -0.052 5.052 7 C -0.139 4.139 8 C 0.331 3.669 9 O -0.412 6.412 10 N -0.118 5.118 11 C -0.470 4.470 12 H 0.100 0.900 13 C -0.140 4.140 14 N -0.453 5.453 15 Si 0.742 3.258 16 H -0.212 1.212 17 H -0.203 1.203 18 H -0.199 1.199 19 C -0.023 4.023 20 C -0.220 4.220 21 C -0.239 4.239 22 C -0.029 4.029 23 C -0.071 4.071 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.092 4.092 27 N 0.018 4.982 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.184 0.816 38 H 0.160 0.840 39 H 0.171 0.829 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.511 -5.687 -14.679 17.895 hybrid contribution -0.267 -1.022 1.427 1.775 sum -8.778 -6.709 -13.252 17.254 Atomic orbital electron populations 1.30209 1.24909 1.12225 1.12360 1.04616 0.78103 0.74684 0.71468 1.93631 1.77213 1.34789 1.84380 1.93554 1.78142 1.62404 1.59401 1.36283 1.30710 0.84558 1.22137 1.70291 1.07605 1.30779 0.96510 1.21944 1.09098 0.87143 0.95681 1.16097 0.83732 0.83656 0.83386 1.90663 1.52431 1.51280 1.46804 1.42550 1.61751 1.02142 1.05404 1.18912 1.21602 1.21155 0.85338 0.89958 1.25278 0.93798 0.95316 0.99593 1.69888 1.09437 1.29592 1.36343 0.86228 0.78006 0.77791 0.83738 1.21156 1.20286 1.19915 1.22102 1.00346 0.86414 0.93445 1.23134 0.99156 0.97038 1.02697 1.23185 0.92021 1.06896 1.01755 1.19750 1.03120 0.96867 0.83209 1.21003 0.95586 0.88195 1.02276 1.21272 1.00482 0.99288 0.93479 1.20946 1.00689 0.96553 0.96147 1.22139 1.04661 0.84062 0.98359 1.42421 1.40651 1.06026 1.09126 0.84089 0.84555 0.85201 0.92446 0.85504 0.87830 0.89817 0.89659 0.89622 0.81630 0.83967 0.82928 0.80202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.54 10.80 101.05 1.09 -3.45 16 2 S 2.54 30.98 5.93 -107.50 -0.64 30.34 16 3 O -0.90 -14.28 17.92 -57.54 -1.03 -15.31 16 4 O -0.94 -12.14 15.90 -57.54 -0.91 -13.06 16 5 C -0.41 -6.86 7.60 -89.49 -0.68 -7.54 16 6 N -0.33 -6.80 7.79 -9.72 -0.08 -6.88 16 7 C 0.01 0.13 6.74 -82.57 -0.56 -0.43 16 8 C 0.54 14.69 7.02 -13.08 -0.09 14.60 16 9 O -0.53 -15.59 13.29 5.07 0.07 -15.52 16 10 N -0.40 -10.72 2.83 -109.37 -0.31 -11.03 16 11 C -0.34 -9.54 7.91 -15.02 -0.12 -9.66 16 12 H 0.08 2.20 7.30 -52.48 -0.38 1.81 16 13 C 0.07 2.02 4.37 -17.46 -0.08 1.95 16 14 N -0.82 -24.39 11.61 55.49 0.64 -23.74 16 15 Si 0.92 21.79 29.60 -169.99 -5.03 16.75 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.08 1.91 5.18 -67.93 -0.35 1.56 16 20 C -0.18 -3.73 9.80 -26.69 -0.26 -3.99 16 21 C -0.20 -3.91 10.35 -26.69 -0.28 -4.19 16 22 C 0.09 1.66 6.72 -83.96 -0.56 1.10 16 23 C -0.05 -0.85 9.74 -39.55 -0.39 -1.23 16 24 C -0.12 -1.47 10.09 -39.45 -0.40 -1.87 16 25 C -0.12 -1.25 9.98 -39.91 -0.40 -1.65 16 26 C 0.03 0.37 10.43 -16.59 -0.17 0.20 16 27 N -0.31 -5.06 2.94 -61.25 -0.18 -5.24 16 28 H 0.14 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.14 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.27 7.51 8.32 -40.82 -0.34 7.17 16 32 H 0.13 2.98 5.82 -51.93 -0.30 2.67 16 33 H 0.10 2.23 6.75 -51.93 -0.35 1.88 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.17 3.00 7.19 -52.49 -0.38 2.62 16 38 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.18 1.68 6.53 -52.49 -0.34 1.34 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -38.51 352.69 -9.67 -48.17 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.27 Total: 4.79 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -3.24 Total: -14.59 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.08 Total: -46.89 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.88 Total: -43.88 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.75 kcal Atomic # 16 Polarization: 30.98 SS G_CDS: -0.64 Total: 30.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.51 -9.67 -48.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058290221.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.968 kcal (2) G-P(sol) polarization free energy of solvation -38.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds