Wall clock time and date at job start Tue Mar 31 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46903 * 109.46869 * 2 1 4 4 C 1.46892 * 111.00237 * 302.64579 * 3 2 1 5 5 C 1.50701 * 109.46908 * 296.31636 * 4 3 2 6 6 H 1.07997 * 120.00685 * 354.80845 * 5 4 3 7 7 C 1.37880 * 119.99964 * 174.81163 * 5 4 3 8 8 N 1.31520 * 119.99960 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00417 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46692 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47388 * 119.99408 * 9 7 5 12 12 H 1.48489 * 109.47202 * 240.00145 * 9 7 5 13 13 C 1.46905 * 110.99884 * 66.60200 * 3 2 1 14 14 N 1.46494 * 109.47356 * 66.03838 * 13 3 2 15 15 N 1.40171 * 126.33213 * 90.02688 * 14 13 3 16 16 C 1.29429 * 108.14646 * 180.02562 * 15 14 13 17 17 N 1.37495 * 108.80167 * 0.26154 * 16 15 14 18 18 C 1.40116 * 125.84429 * 179.73647 * 17 16 15 19 19 C 1.38912 * 120.03731 * 129.75179 * 18 17 16 20 20 C 1.38134 * 120.04186 * 179.72464 * 19 18 17 21 21 C 1.38216 * 120.11906 * 0.54991 * 20 19 18 22 22 C 1.38758 * 120.08064 * 359.73030 * 21 20 19 23 23 O 1.35899 * 120.02193 * 179.97438 * 22 21 20 24 24 C 1.42899 * 116.99972 * 0.02562 * 23 22 21 25 25 C 1.38631 * 119.96101 * 359.97438 * 22 21 20 26 26 C 1.34819 * 108.31183 * 359.56660 * 17 16 15 27 27 S 1.71201 * 126.29500 * 180.16136 * 26 17 16 28 28 H 1.09004 * 109.47152 * 65.85186 * 1 2 3 29 29 H 1.09001 * 109.47423 * 185.84931 * 1 2 3 30 30 H 1.08996 * 109.47527 * 305.84947 * 1 2 3 31 31 H 1.08996 * 109.47045 * 240.00198 * 2 1 3 32 32 H 1.08993 * 109.46974 * 120.00337 * 2 1 3 33 33 H 1.08998 * 109.47462 * 56.31643 * 4 3 2 34 34 H 1.09003 * 109.47022 * 176.32139 * 4 3 2 35 35 H 0.96999 * 120.00024 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.46732 * 306.04213 * 13 3 2 37 37 H 1.09000 * 109.47119 * 186.04431 * 13 3 2 38 38 H 1.07996 * 125.59267 * 180.02562 * 16 15 14 39 39 H 1.08000 * 119.97877 * 0.02562 * 19 18 17 40 40 H 1.08000 * 119.93772 * 180.27961 * 20 19 18 41 41 H 1.07998 * 119.95849 * 179.69972 * 21 20 19 42 42 H 1.09010 * 109.46973 * 299.99757 * 24 23 22 43 43 H 1.09001 * 109.47585 * 59.99784 * 24 23 22 44 44 H 1.08998 * 109.47546 * 180.02562 * 24 23 22 45 45 H 1.07994 * 120.06443 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4977 2.1280 -1.1547 5 6 2.0194 1.5107 -2.4266 6 1 2.7387 0.7064 -2.3812 7 6 1.5786 1.9730 -3.6486 8 7 0.7023 2.9522 -3.7040 9 14 2.2247 1.2075 -5.2253 10 1 3.1930 0.1318 -4.8926 11 1 1.0931 0.6341 -5.9972 12 1 2.9023 2.2483 -6.0393 13 6 1.6816 2.0629 1.2587 14 7 2.4115 1.4351 2.3628 15 7 3.6815 1.7985 2.8318 16 6 3.9881 1.0139 3.8144 17 7 2.9558 0.1276 4.0125 18 6 2.9165 -0.8828 4.9825 19 6 1.8099 -1.0069 5.8129 20 6 1.7687 -2.0064 6.7654 21 6 2.8325 -2.8782 6.9024 22 6 3.9429 -2.7553 6.0795 23 8 4.9883 -3.6128 6.2156 24 6 4.8764 -4.6170 7.2260 25 6 3.9852 -1.7571 5.1183 26 6 1.9861 0.3995 3.1162 27 16 0.4928 -0.4226 2.9580 28 1 -0.3634 0.4204 -0.9378 29 1 -0.3634 -1.0223 0.1047 30 1 -0.3634 0.6018 0.8329 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.4085 2.0868 -1.1511 34 1 1.8223 3.1668 -1.0952 35 1 0.3919 3.2771 -4.5637 36 1 0.6096 1.9811 1.4388 37 1 1.9595 3.1147 1.1909 38 1 4.9060 1.0472 4.3825 39 1 0.9792 -0.3244 5.7106 40 1 0.9055 -2.1042 7.4072 41 1 2.7995 -3.6558 7.6512 42 1 4.7592 -4.1412 8.1997 43 1 4.0084 -5.2437 7.0209 44 1 5.7764 -5.2319 7.2285 45 1 4.8487 -1.6596 4.4772 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058298088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:13 Heat of formation + Delta-G solvation = 115.080774 kcal Electronic energy + Delta-G solvation = -28126.560429 eV Core-core repulsion = 24274.197791 eV Total energy + Delta-G solvation = -3852.362638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.96205 -40.49983 -38.27676 -37.37610 -34.88435 -32.93638 -32.16998 -31.32533 -30.00432 -29.30059 -27.90218 -27.41773 -25.36170 -24.09388 -23.46757 -23.05394 -22.21778 -21.97870 -19.93425 -19.13972 -17.39494 -17.09115 -16.69341 -16.51470 -16.30544 -16.20235 -16.15445 -15.77397 -15.21797 -14.88120 -14.65329 -14.22413 -14.14496 -13.85628 -13.24644 -12.97018 -12.81234 -12.45426 -12.31863 -12.13844 -11.83187 -11.74706 -11.57190 -11.44177 -11.25196 -11.19397 -11.09138 -10.99430 -10.73312 -10.68949 -10.40236 -9.95949 -9.75044 -9.33242 -9.25277 -8.67472 -8.46289 -7.50438 -7.43103 -7.11614 -6.05285 -4.06157 0.50559 0.99679 1.13838 1.35836 1.64493 2.31775 2.45208 2.88562 3.23547 3.31298 3.38765 3.44039 4.13011 4.32803 4.37333 4.41851 4.57421 4.60360 4.69703 4.71664 4.80491 4.88626 4.97363 5.05321 5.20690 5.30623 5.31205 5.52282 5.58695 5.76626 5.89369 5.96229 6.04034 6.07565 6.20640 6.28270 6.48121 6.56250 6.79605 6.88711 6.90090 7.07059 7.19666 7.26289 7.41480 7.72334 7.95325 8.07684 8.42657 9.00409 9.57776 11.05468 Molecular weight = 348.14amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.002532 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.094981 B =11054.461735 C =11359.985052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.062 3.938 3 N -0.546 5.546 4 C 0.195 3.805 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.297 3.703 14 N -0.350 5.350 15 N -0.253 5.253 16 C 0.238 3.762 17 N -0.456 5.456 18 C 0.165 3.835 19 C -0.112 4.112 20 C -0.065 4.065 21 C -0.195 4.195 22 C 0.138 3.862 23 O -0.314 6.314 24 C 0.027 3.973 25 C -0.144 4.144 26 C 0.459 3.541 27 S -0.561 6.561 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.014 0.986 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.240 0.760 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.273 -9.794 26.536 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.066 4.066 3 N -0.271 5.271 4 C 0.071 3.929 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.088 3.912 14 N -0.143 5.143 15 N -0.070 5.070 16 C -0.062 4.062 17 N -0.154 5.154 18 C 0.074 3.926 19 C -0.132 4.132 20 C -0.084 4.084 21 C -0.214 4.214 22 C 0.092 3.908 23 O -0.228 6.228 24 C -0.068 4.068 25 C -0.164 4.164 26 C 0.100 3.900 27 S -0.431 6.431 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.256 0.744 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.120 0.880 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.251 -9.245 25.385 27.972 hybrid contribution 0.056 -0.638 -0.268 0.695 sum 7.307 -9.883 25.117 27.963 Atomic orbital electron populations 1.22292 0.97524 1.01633 1.01444 1.22069 0.93977 0.89375 1.01135 1.62358 1.60288 1.03533 1.00934 1.19779 0.94579 0.93129 0.85391 1.21066 1.24766 1.18861 0.89506 0.91879 1.24953 0.95108 0.95190 0.99192 1.69957 1.31274 1.26999 1.25393 0.86432 0.78712 0.79161 0.83085 1.19708 1.21026 1.21030 1.22500 0.93002 0.95197 0.80537 1.49869 1.11717 1.25272 1.27429 1.77305 0.97731 1.21693 1.10279 1.26653 0.95433 0.87645 0.96437 1.43450 1.15327 1.28123 1.28464 1.16914 0.96697 0.89339 0.89613 1.21125 0.97552 1.00378 0.94145 1.20825 0.97732 0.93041 0.96773 1.21393 0.94618 1.03060 1.02375 1.18516 0.87340 0.90369 0.94567 1.86081 1.39028 1.42198 1.55462 1.23111 1.03821 0.89813 0.90066 1.20066 1.00301 0.95118 1.00935 1.24026 0.93747 0.87974 0.84213 1.93378 1.06179 1.59750 1.83786 0.92447 0.93448 0.91907 0.90597 0.92949 0.96845 0.95412 0.92904 0.89122 0.87249 0.74377 0.84125 0.84480 0.84787 0.92450 0.92338 0.88007 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 7.73 37.16 0.29 -3.27 16 2 C 0.06 1.35 5.29 -3.82 -0.02 1.33 16 3 N -0.55 -11.93 4.86 -239.98 -1.17 -13.10 16 4 C 0.20 4.95 4.38 -4.98 -0.02 4.92 16 5 C -0.50 -14.01 8.42 -34.44 -0.29 -14.30 16 6 H 0.06 1.78 7.14 -52.49 -0.37 1.41 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.30 5.48 5.85 -63.32 -0.37 5.11 16 14 N -0.35 -5.86 3.59 -64.99 -0.23 -6.09 16 15 N -0.25 -3.64 12.53 29.90 0.37 -3.27 16 16 C 0.24 2.51 12.35 -88.97 -1.10 1.41 16 17 N -0.46 -5.76 2.85 -62.94 -0.18 -5.94 16 18 C 0.17 1.83 5.78 -83.64 -0.48 1.34 16 19 C -0.11 -1.16 8.78 -39.37 -0.35 -1.51 16 20 C -0.06 -0.52 10.03 -39.63 -0.40 -0.91 16 21 C -0.20 -1.44 9.04 -39.40 -0.36 -1.80 16 22 C 0.14 1.22 6.68 -39.24 -0.26 0.96 16 23 O -0.31 -2.61 10.49 -19.42 -0.20 -2.81 16 24 C 0.03 0.12 9.81 101.05 0.99 1.11 16 25 C -0.14 -1.40 9.61 -39.25 -0.38 -1.78 16 26 C 0.46 7.43 6.45 -86.73 -0.56 6.87 16 27 S -0.56 -10.30 23.72 -107.50 -2.55 -12.85 16 28 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.29 4.70 -51.93 -0.24 1.04 16 31 H 0.08 1.77 6.89 -51.93 -0.36 1.42 16 32 H 0.05 1.11 5.06 -51.93 -0.26 0.85 16 33 H 0.01 0.37 6.18 -51.93 -0.32 0.05 16 34 H 0.03 0.74 7.98 -51.93 -0.41 0.32 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.09 1.69 5.71 -51.92 -0.30 1.39 16 37 H 0.11 1.90 7.96 -51.93 -0.41 1.49 16 38 H 0.24 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.14 1.61 7.47 -52.49 -0.39 1.22 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.64 6.29 -52.49 -0.33 0.31 16 42 H 0.06 0.17 7.66 -51.92 -0.40 -0.23 16 43 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 44 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -34.12 373.94 -11.80 -45.92 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.80 Total: 0.24 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -3.40 Total: 1.00 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.47 Total: -53.90 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: -0.20 Total: -2.81 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -10.30 SS G_CDS: -2.55 Total: -12.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.12 -11.80 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058298088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.004 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds