Wall clock time and date at job start Tue Mar 31 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39778 * 125.83333 * 2 1 4 4 C 1.36170 * 107.81012 * 180.16370 * 3 2 1 5 5 N 1.39212 * 126.21956 * 179.84459 * 4 3 2 6 6 S 1.65601 * 119.99851 * 354.74154 * 5 4 3 7 7 O 1.42094 * 106.40239 * 311.87448 * 6 5 4 8 8 O 1.42105 * 106.40016 * 178.95124 * 6 5 4 9 9 C 1.76203 * 107.21624 * 65.41601 * 6 5 4 10 10 C 1.38254 * 119.99417 * 244.14207 * 9 6 5 11 11 C 1.38221 * 119.99688 * 180.02562 * 10 9 6 12 12 C 1.50704 * 119.99949 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.00164 * 359.97438 * 11 10 9 14 14 C 1.38210 * 119.99586 * 359.81431 * 13 11 10 15 15 C 1.38212 * 120.00303 * 64.16457 * 9 6 5 16 16 C 1.50702 * 119.99958 * 359.97438 * 15 9 6 17 17 N 1.35246 * 107.56034 * 359.58256 * 4 3 2 18 18 C 1.46503 * 126.04210 * 180.26151 * 17 4 3 19 19 C 1.50703 * 109.46729 * 90.00376 * 18 17 4 20 20 H 1.07994 * 120.00188 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99688 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00152 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47031 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46981 * 119.99903 * 23 21 19 26 26 H 1.48498 * 109.47046 * 239.99531 * 23 21 19 27 27 N 1.30839 * 125.84400 * 179.69444 * 2 1 3 28 28 H 1.08999 * 109.46901 * 270.27509 * 1 2 3 29 29 H 1.08994 * 109.47362 * 30.28098 * 1 2 3 30 30 H 1.09007 * 109.46250 * 150.27947 * 1 2 3 31 31 H 1.07995 * 126.09752 * 0.02562 * 3 2 1 32 32 H 0.97004 * 119.99997 * 174.74284 * 5 4 3 33 33 H 1.08003 * 120.00400 * 359.97438 * 10 9 6 34 34 H 1.09004 * 109.46686 * 89.99538 * 12 11 10 35 35 H 1.08991 * 109.47272 * 209.99573 * 12 11 10 36 36 H 1.08997 * 109.47348 * 330.00296 * 12 11 10 37 37 H 1.07992 * 120.00017 * 179.97438 * 13 11 10 38 38 H 1.08004 * 119.99748 * 180.23560 * 14 13 11 39 39 H 1.09001 * 109.46757 * 84.50418 * 16 15 9 40 40 H 1.08998 * 109.47240 * 324.50201 * 16 15 9 41 41 H 1.08992 * 109.46905 * 204.50386 * 16 15 9 42 42 H 1.09005 * 109.47179 * 209.99786 * 18 17 4 43 43 H 1.08996 * 109.47197 * 330.00270 * 18 17 4 44 44 H 0.96998 * 120.00092 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1332 0.0000 4 6 3.6202 0.7119 -0.0037 5 7 4.7499 1.5254 -0.0080 6 16 4.5868 3.1680 -0.1404 7 8 3.6942 3.3967 -1.2221 8 8 5.9007 3.7070 -0.0896 9 6 3.7624 3.7291 1.3123 10 6 2.5097 4.3061 1.2168 11 6 1.8632 4.7467 2.3563 12 6 0.4979 5.3763 2.2522 13 6 2.4689 4.6099 3.5915 14 6 3.7194 4.0290 3.6873 15 6 4.3682 3.5927 2.5470 16 6 5.7337 2.9636 2.6510 17 7 3.6093 -0.6405 0.0035 18 6 4.7869 -1.5120 0.0081 19 6 5.1906 -1.8033 1.4305 20 1 4.6267 -1.3812 2.2491 21 6 6.2805 -2.6080 1.6867 22 7 6.9676 -3.1216 0.6898 23 14 6.7814 -2.9685 3.4499 24 1 5.8532 -2.2762 4.3795 25 1 6.7237 -4.4326 3.6913 26 1 8.1657 -2.4830 3.6804 27 7 2.2732 -1.0606 0.0057 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8874 -0.5182 30 1 -0.3632 -0.8926 -0.5095 31 1 1.9903 2.1599 0.0004 32 1 5.6326 1.1300 0.0665 33 1 2.0366 4.4134 0.2518 34 1 -0.2660 4.6035 2.3378 35 1 0.3709 6.1032 3.0543 36 1 0.4013 5.8774 1.2891 37 1 1.9640 4.9545 4.4817 38 1 4.1910 3.9186 4.6526 39 1 6.4970 3.7199 2.4680 40 1 5.8248 2.1687 1.9108 41 1 5.8668 2.5472 3.6495 42 1 4.5495 -2.4463 -0.5008 43 1 5.6084 -1.0155 -0.5083 44 1 7.7346 -3.6874 0.8701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058304535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:43 Heat of formation + Delta-G solvation = 19.116809 kcal Electronic energy + Delta-G solvation = -29572.687550 eV Core-core repulsion = 25618.444940 eV Total energy + Delta-G solvation = -3954.242610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.64871 -39.64924 -37.33656 -35.90941 -35.19697 -34.08332 -33.81384 -32.11426 -31.42853 -29.49696 -29.16604 -28.01111 -26.09276 -25.10312 -23.51441 -22.92792 -21.50638 -20.88909 -19.90536 -18.93233 -17.37811 -17.10191 -16.96572 -16.61951 -15.97148 -15.81233 -15.04921 -14.79456 -14.63151 -14.41215 -14.34563 -14.13022 -13.43536 -13.14923 -13.04690 -12.88068 -12.82171 -12.61636 -12.44887 -12.37763 -12.24511 -12.09820 -12.04102 -11.94585 -11.90750 -11.79152 -11.56760 -11.36136 -11.33848 -10.96895 -10.92536 -10.57110 -10.36354 -9.85827 -9.82258 -9.43992 -8.74302 -8.68431 -8.06195 -7.66610 -6.35251 -4.43677 0.24610 0.74437 1.16912 2.63112 2.71757 3.13183 3.21896 3.25180 3.28293 3.34714 3.58914 3.73982 4.21481 4.33282 4.58074 4.62405 4.73080 4.93360 4.98199 4.98417 5.05515 5.22674 5.29668 5.39068 5.42021 5.54118 5.59410 5.72923 5.73548 5.83457 5.93451 5.95208 6.01918 6.04411 6.09022 6.21066 6.24637 6.28171 6.40483 6.73930 6.78802 6.90658 6.99252 7.36365 7.57258 7.77263 7.89173 8.51758 8.65358 9.23702 10.72357 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.004514 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.784972 B = 6201.870208 C = 6867.134115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.070 3.930 3 C -0.331 4.331 4 C 0.334 3.666 5 N -1.028 6.028 6 S 2.704 3.296 7 O -0.942 6.942 8 O -0.947 6.947 9 C -0.668 4.668 10 C -0.013 4.013 11 C -0.114 4.114 12 C -0.113 4.113 13 C -0.060 4.060 14 C -0.138 4.138 15 C 0.023 3.977 16 C -0.150 4.150 17 N -0.334 5.334 18 C 0.253 3.747 19 C -0.540 4.540 20 H 0.066 0.934 21 C 0.067 3.933 22 N -0.888 5.888 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.285 5.285 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.141 0.859 32 H 0.433 0.567 33 H 0.144 0.856 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 16.037 4.001 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.365 4.365 4 C 0.107 3.893 5 N -0.780 5.780 6 S 2.794 3.206 7 O -0.932 6.932 8 O -0.937 6.937 9 C -0.756 4.756 10 C -0.032 4.032 11 C -0.115 4.115 12 C -0.170 4.170 13 C -0.078 4.078 14 C -0.157 4.157 15 C 0.022 3.978 16 C -0.207 4.207 17 N -0.118 5.118 18 C 0.136 3.864 19 C -0.579 4.579 20 H 0.084 0.916 21 C -0.137 4.137 22 N -0.526 5.526 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 N -0.110 5.110 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.159 0.841 32 H 0.272 0.728 33 H 0.161 0.839 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.245 15.129 3.227 17.529 hybrid contribution 0.691 0.198 1.757 1.898 sum -7.554 15.327 4.984 17.800 Atomic orbital electron populations 1.20059 0.87411 1.02647 1.02247 1.21785 0.96410 0.90285 1.01002 1.20608 0.89076 1.00132 1.26701 1.17401 0.86463 0.84374 1.01034 1.53009 1.13328 1.24911 1.86777 1.01784 0.73728 0.71060 0.74055 1.93595 1.66291 1.83332 1.50005 1.93632 1.37130 1.75549 1.87374 1.30520 1.09258 1.18143 1.17647 1.20799 0.91219 0.91762 0.99441 1.19964 0.97397 1.01088 0.93098 1.20795 0.92910 1.00363 1.02941 1.21305 0.94355 0.94973 0.97188 1.21135 0.95725 1.00647 0.98191 1.19546 0.94995 0.91664 0.91625 1.21321 0.93127 1.01341 1.04880 1.49352 1.06638 1.02186 1.53622 1.19716 0.77844 0.89755 0.99131 1.21348 1.13350 1.31977 0.91210 0.91556 1.24936 0.95698 0.94902 0.98148 1.69924 1.19075 1.32471 1.31092 0.86321 0.78402 0.78463 0.83645 1.19578 1.20540 1.20571 1.77382 0.86032 1.21683 1.25883 0.91205 0.90989 0.91257 0.84092 0.72835 0.83850 0.90737 0.91499 0.91184 0.85386 0.85080 0.88426 0.90952 0.89607 0.92331 0.93418 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.01 0.38 -0.51 16 2 C 0.07 1.33 7.21 -82.44 -0.59 0.74 16 3 C -0.33 -6.23 9.17 -39.75 -0.36 -6.59 16 4 C 0.33 6.75 7.56 -153.41 -1.16 5.59 16 5 N -1.03 -18.13 4.65 31.11 0.14 -17.98 16 6 S 2.70 43.49 4.50 -107.50 -0.48 43.01 16 7 O -0.94 -16.51 15.41 -57.17 -0.88 -17.39 16 8 O -0.95 -16.09 16.55 -57.17 -0.95 -17.04 16 9 C -0.67 -9.64 5.18 -39.58 -0.20 -9.85 16 10 C -0.01 -0.16 7.83 -39.58 -0.31 -0.47 16 11 C -0.11 -1.24 5.88 -104.62 -0.62 -1.86 16 12 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 13 C -0.06 -0.62 9.70 -39.58 -0.38 -1.00 16 14 C -0.14 -1.60 9.68 -39.58 -0.38 -1.98 16 15 C 0.02 0.32 5.87 -104.62 -0.61 -0.30 16 16 C -0.15 -1.99 8.63 36.01 0.31 -1.68 16 17 N -0.33 -7.63 3.60 -61.63 -0.22 -7.86 16 18 C 0.25 6.28 5.99 -5.19 -0.03 6.25 16 19 C -0.54 -14.23 9.39 -34.44 -0.32 -14.56 16 20 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 23 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 N -0.28 -6.38 12.56 33.65 0.42 -5.95 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.14 2.32 5.12 -52.49 -0.27 2.05 16 32 H 0.43 7.33 7.71 -34.47 -0.27 7.06 16 33 H 0.14 1.67 7.18 -52.48 -0.38 1.30 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.10 1.18 8.03 -51.93 -0.42 0.76 16 40 H 0.07 1.05 5.37 -51.93 -0.28 0.77 16 41 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 42 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.05 1.16 7.56 -51.93 -0.39 0.77 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -32.55 377.55 -10.36 -42.91 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.76 Total: 7.79 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -4.03 Total: -25.07 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 1.08 Total: -55.25 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.83 Total: -34.43 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 43.49 SS G_CDS: -0.48 Total: 43.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.55 -10.36 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058304535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.025 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds