Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39778 * 125.83333 * 2 1 4 4 C 1.36170 * 107.81012 * 180.16370 * 3 2 1 5 5 N 1.39212 * 126.21956 * 179.84459 * 4 3 2 6 6 S 1.65601 * 119.99851 * 354.74154 * 5 4 3 7 7 O 1.42094 * 106.40239 * 311.87448 * 6 5 4 8 8 O 1.42105 * 106.40016 * 178.95124 * 6 5 4 9 9 C 1.76203 * 107.21624 * 65.41601 * 6 5 4 10 10 C 1.38254 * 119.99417 * 244.14207 * 9 6 5 11 11 C 1.38221 * 119.99688 * 180.02562 * 10 9 6 12 12 C 1.50704 * 119.99949 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.00164 * 359.97438 * 11 10 9 14 14 C 1.38210 * 119.99586 * 359.81431 * 13 11 10 15 15 C 1.38212 * 120.00303 * 64.16457 * 9 6 5 16 16 C 1.50702 * 119.99958 * 359.97438 * 15 9 6 17 17 N 1.35246 * 107.56034 * 359.58256 * 4 3 2 18 18 C 1.46503 * 126.04210 * 180.26151 * 17 4 3 19 19 C 1.50703 * 109.46729 * 90.00376 * 18 17 4 20 20 H 1.07994 * 120.00188 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99688 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00152 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47031 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46981 * 119.99903 * 23 21 19 26 26 H 1.48498 * 109.47046 * 239.99531 * 23 21 19 27 27 N 1.30839 * 125.84400 * 179.69444 * 2 1 3 28 28 H 1.08999 * 109.46901 * 270.27509 * 1 2 3 29 29 H 1.08994 * 109.47362 * 30.28098 * 1 2 3 30 30 H 1.09007 * 109.46250 * 150.27947 * 1 2 3 31 31 H 1.07995 * 126.09752 * 0.02562 * 3 2 1 32 32 H 0.97004 * 119.99997 * 174.74284 * 5 4 3 33 33 H 1.08003 * 120.00400 * 359.97438 * 10 9 6 34 34 H 1.09004 * 109.46686 * 89.99538 * 12 11 10 35 35 H 1.08991 * 109.47272 * 209.99573 * 12 11 10 36 36 H 1.08997 * 109.47348 * 330.00296 * 12 11 10 37 37 H 1.07992 * 120.00017 * 179.97438 * 13 11 10 38 38 H 1.08004 * 119.99748 * 180.23560 * 14 13 11 39 39 H 1.09001 * 109.46757 * 84.50418 * 16 15 9 40 40 H 1.08998 * 109.47240 * 324.50201 * 16 15 9 41 41 H 1.08992 * 109.46905 * 204.50386 * 16 15 9 42 42 H 1.09005 * 109.47179 * 209.99786 * 18 17 4 43 43 H 1.08996 * 109.47197 * 330.00270 * 18 17 4 44 44 H 0.96998 * 120.00092 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1332 0.0000 4 6 3.6202 0.7119 -0.0037 5 7 4.7499 1.5254 -0.0080 6 16 4.5868 3.1680 -0.1404 7 8 3.6942 3.3967 -1.2221 8 8 5.9007 3.7070 -0.0896 9 6 3.7624 3.7291 1.3123 10 6 2.5097 4.3061 1.2168 11 6 1.8632 4.7467 2.3563 12 6 0.4979 5.3763 2.2522 13 6 2.4689 4.6099 3.5915 14 6 3.7194 4.0290 3.6873 15 6 4.3682 3.5927 2.5470 16 6 5.7337 2.9636 2.6510 17 7 3.6093 -0.6405 0.0035 18 6 4.7869 -1.5120 0.0081 19 6 5.1906 -1.8033 1.4305 20 1 4.6267 -1.3812 2.2491 21 6 6.2805 -2.6080 1.6867 22 7 6.9676 -3.1216 0.6898 23 14 6.7814 -2.9685 3.4499 24 1 5.8532 -2.2762 4.3795 25 1 6.7237 -4.4326 3.6913 26 1 8.1657 -2.4830 3.6804 27 7 2.2732 -1.0606 0.0057 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8874 -0.5182 30 1 -0.3632 -0.8926 -0.5095 31 1 1.9903 2.1599 0.0004 32 1 5.6326 1.1300 0.0665 33 1 2.0366 4.4134 0.2518 34 1 -0.2660 4.6035 2.3378 35 1 0.3709 6.1032 3.0543 36 1 0.4013 5.8774 1.2891 37 1 1.9640 4.9545 4.4817 38 1 4.1910 3.9186 4.6526 39 1 6.4970 3.7199 2.4680 40 1 5.8248 2.1687 1.9108 41 1 5.8668 2.5472 3.6495 42 1 4.5495 -2.4463 -0.5008 43 1 5.6084 -1.0155 -0.5083 44 1 7.7346 -3.6874 0.8701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058304535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = -1.002215 kcal Electronic energy + Delta-G solvation = -29573.559976 eV Core-core repulsion = 25618.444940 eV Total energy + Delta-G solvation = -3955.115036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.22139 -40.54638 -38.66073 -37.24657 -36.63875 -35.76598 -34.90347 -33.84332 -32.35607 -30.75849 -30.28784 -29.53794 -27.81345 -25.93541 -24.79369 -24.43471 -22.50819 -22.34033 -21.36385 -20.26779 -18.92333 -18.60507 -18.47149 -18.09276 -17.11081 -16.73844 -16.62247 -16.28824 -16.03792 -15.95018 -15.31065 -15.12444 -14.67738 -14.46186 -14.21651 -14.10241 -13.92350 -13.86050 -13.71547 -13.58241 -13.51594 -13.43489 -13.32962 -13.18777 -13.10076 -13.02152 -12.84852 -12.72424 -12.65044 -12.51461 -12.29793 -12.19148 -11.73294 -11.63119 -11.39475 -10.77166 -10.36079 -9.72488 -9.56567 -9.22710 -8.36894 -6.54012 -1.00458 -0.23103 0.27473 1.05369 1.33439 1.35093 1.38211 1.49616 1.85307 1.93798 2.32116 2.33240 2.58893 2.94167 3.14397 3.53188 3.63831 3.73992 3.76920 3.93769 4.13374 4.25145 4.42713 4.45442 4.50473 4.51655 4.60160 4.72697 4.75385 4.79004 4.84830 4.91237 4.92625 4.94143 5.03331 5.07602 5.13106 5.24558 5.30397 5.32066 5.45620 5.47529 5.51340 5.75916 5.89625 5.90371 6.17000 6.57601 6.95873 7.17648 8.70525 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.004514 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.784972 B = 6201.870208 C = 6867.134115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.078 3.922 3 C -0.333 4.333 4 C 0.330 3.670 5 N -1.030 6.030 6 S 2.709 3.291 7 O -0.961 6.961 8 O -0.962 6.962 9 C -0.678 4.678 10 C -0.030 4.030 11 C -0.112 4.112 12 C -0.114 4.114 13 C -0.055 4.055 14 C -0.143 4.143 15 C 0.001 3.999 16 C -0.156 4.156 17 N -0.361 5.361 18 C 0.268 3.732 19 C -0.551 4.551 20 H 0.054 0.946 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.970 3.030 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.268 1.268 27 N -0.329 5.329 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.165 0.835 32 H 0.432 0.568 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.029 0.971 43 H 0.043 0.957 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.774 17.890 6.406 21.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 C -0.366 4.366 4 C 0.104 3.896 5 N -0.780 5.780 6 S 2.803 3.197 7 O -0.951 6.951 8 O -0.953 6.953 9 C -0.770 4.770 10 C -0.050 4.050 11 C -0.113 4.113 12 C -0.170 4.170 13 C -0.072 4.072 14 C -0.161 4.161 15 C 0.000 4.000 16 C -0.213 4.213 17 N -0.145 5.145 18 C 0.149 3.851 19 C -0.589 4.589 20 H 0.072 0.928 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.793 3.207 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.193 1.193 27 N -0.154 5.154 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.182 0.818 32 H 0.270 0.730 33 H 0.167 0.833 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.182 0.818 38 H 0.172 0.828 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.242 16.986 5.585 20.606 hybrid contribution 1.213 -0.258 1.029 1.612 sum -9.029 16.728 6.615 20.127 Atomic orbital electron populations 1.20302 0.83489 1.04425 1.04062 1.22715 0.98710 0.89288 0.98081 1.20974 0.88406 1.01229 1.25995 1.17769 0.87793 0.83662 1.00402 1.53143 1.12800 1.25276 1.86749 1.01407 0.73414 0.70323 0.74530 1.93556 1.66470 1.83360 1.51758 1.93601 1.38296 1.75444 1.87932 1.30116 1.10325 1.19997 1.16518 1.21034 0.90837 0.92324 1.00761 1.20381 0.98524 0.99886 0.92499 1.20896 0.90945 1.00958 1.04241 1.21786 0.93720 0.93358 0.98380 1.21490 0.96275 1.00010 0.98350 1.19708 0.95293 0.92815 0.92227 1.21382 0.93726 1.01048 1.05115 1.49120 1.06462 1.02902 1.56021 1.19267 0.78721 0.88965 0.98168 1.21434 1.13621 1.32368 0.91465 0.92761 1.25738 0.95436 0.94405 1.02158 1.70013 1.19514 1.32906 1.33102 0.85330 0.78432 0.78225 0.78673 1.19394 1.20184 1.19270 1.77337 0.86055 1.23683 1.28357 0.89201 0.88080 0.90628 0.81796 0.73021 0.83311 0.89775 0.89415 0.90562 0.81752 0.82763 0.87943 0.92909 0.88143 0.95273 0.93919 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.59 10.44 71.24 0.74 -0.84 16 2 C 0.08 2.88 7.21 43.08 0.31 3.19 16 3 C -0.33 -12.35 9.17 22.16 0.20 -12.15 16 4 C 0.33 13.69 7.56 131.43 0.99 14.68 16 5 N -1.03 -37.91 4.65 -55.50 -0.26 -38.17 16 6 S 2.71 89.21 4.50 -56.49 -0.25 88.96 16 7 O -0.96 -34.12 15.41 -128.00 -1.97 -36.09 16 8 O -0.96 -33.87 16.55 -128.00 -2.12 -35.98 16 9 C -0.68 -19.16 5.18 22.27 0.12 -19.05 16 10 C -0.03 -0.72 7.83 22.27 0.17 -0.54 16 11 C -0.11 -2.05 5.88 -19.86 -0.12 -2.17 16 12 C -0.11 -1.28 10.01 71.24 0.71 -0.56 16 13 C -0.05 -0.92 9.70 22.27 0.22 -0.70 16 14 C -0.14 -2.92 9.68 22.27 0.22 -2.70 16 15 C 0.00 0.03 5.87 -19.87 -0.12 -0.09 16 16 C -0.16 -4.14 8.63 71.24 0.61 -3.53 16 17 N -0.36 -17.17 3.60 -348.90 -1.26 -18.43 16 18 C 0.27 14.03 5.99 85.63 0.51 14.54 16 19 C -0.55 -30.00 9.39 25.60 0.24 -29.76 16 20 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 21 C 0.02 1.28 5.46 84.65 0.46 1.74 16 22 N -0.92 -51.13 13.29 21.45 0.28 -50.85 16 23 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 N -0.33 -15.07 12.56 -47.44 -0.60 -15.66 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.16 5.19 5.12 -2.91 -0.01 5.17 16 32 H 0.43 15.72 7.71 -96.74 -0.75 14.98 16 33 H 0.15 3.25 7.18 -2.91 -0.02 3.23 16 34 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.09 0.64 8.08 -2.39 -0.02 0.63 16 36 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 37 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 39 H 0.10 2.51 8.03 -2.39 -0.02 2.49 16 40 H 0.05 1.59 5.37 -2.39 -0.01 1.57 16 41 H 0.10 2.26 8.05 -2.39 -0.02 2.24 16 42 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.04 2.22 7.56 -2.39 -0.02 2.21 16 44 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -72.17 377.55 1.43 -70.74 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.29 Total: 29.45 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 5.28 Total: -37.93 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -1.83 Total: -123.12 kcal Atomic # 8 Polarization: -67.98 SS G_CDS: -4.09 Total: -72.07 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 89.21 SS G_CDS: -0.25 Total: 88.96 kcal Total: -72.17 1.43 -70.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058304535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.737 kcal (2) G-P(sol) polarization free energy of solvation -72.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds