Wall clock time and date at job start Tue Mar 31 2020 05:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99703 * 2 1 4 4 H 1.48503 * 109.46811 * 269.99834 * 3 2 1 5 5 H 1.48497 * 109.47300 * 29.99899 * 3 2 1 6 6 H 1.48499 * 109.47196 * 149.99952 * 3 2 1 7 7 C 1.37870 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00467 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99963 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47354 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99627 * 85.73701 * 10 9 7 12 12 C 1.50700 * 109.47168 * 269.99960 * 11 10 9 13 13 C 1.38674 * 120.41777 * 89.99983 * 12 11 10 14 14 C 1.38631 * 118.42143 * 179.97438 * 13 12 11 15 15 C 1.38226 * 119.15951 * 0.25412 * 14 13 12 16 16 N 1.31857 * 120.76328 * 359.49543 * 15 14 13 17 17 C 1.31884 * 121.72426 * 0.49955 * 16 15 14 18 18 C 1.34777 * 120.00152 * 265.73906 * 10 9 7 19 19 O 1.21585 * 119.99923 * 175.54216 * 18 10 9 20 20 C 1.47629 * 120.00344 * 355.54564 * 18 10 9 21 21 C 1.39697 * 120.15196 * 53.48230 * 20 18 10 22 22 C 1.37794 * 119.89224 * 179.75013 * 21 20 18 23 23 C 1.38618 * 120.20106 * 0.53383 * 22 21 20 24 24 Cl 1.73607 * 119.84309 * 179.76643 * 23 22 21 25 25 C 1.38355 * 120.31343 * 359.74234 * 23 22 21 26 26 C 1.38257 * 120.09899 * 359.97438 * 25 23 22 27 27 F 1.35099 * 120.09846 * 179.97438 * 26 25 23 28 28 H 0.97005 * 120.00672 * 0.02562 * 1 2 3 29 29 H 1.09011 * 109.46616 * 60.00268 * 9 7 2 30 30 H 1.08997 * 109.47124 * 300.00773 * 9 7 2 31 31 H 1.09001 * 109.46749 * 150.00130 * 11 10 9 32 32 H 1.08999 * 109.47013 * 30.00253 * 11 10 9 33 33 H 1.08002 * 120.78595 * 359.95764 * 13 12 11 34 34 H 1.08000 * 120.41585 * 179.97438 * 14 13 12 35 35 H 1.07994 * 119.61790 * 179.74958 * 15 14 13 36 36 H 1.08005 * 119.61593 * 179.75115 * 17 16 15 37 37 H 1.08000 * 120.05443 * 0.02752 * 21 20 18 38 38 H 1.07998 * 119.89981 * 180.25475 * 22 21 20 39 39 H 1.07991 * 119.94608 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 2.7517 -4.1074 1.2665 12 6 4.0167 -3.3564 1.5935 13 6 3.9672 -2.1902 2.3421 14 6 5.1561 -1.5330 2.6190 15 6 6.3422 -2.0555 2.1386 16 7 6.3518 -3.1697 1.4337 17 6 5.2405 -3.8214 1.1514 18 6 2.5742 -4.1817 -1.1625 19 8 3.4244 -5.0508 -1.1704 20 6 1.9484 -3.7498 -2.4280 21 6 1.9355 -2.3977 -2.7787 22 6 1.3545 -2.0011 -3.9636 23 6 0.7732 -2.9384 -4.8032 24 17 0.0384 -2.4278 -6.2909 25 6 0.7761 -4.2791 -4.4614 26 6 1.3607 -4.6918 -3.2784 27 9 1.3631 -6.0008 -2.9444 28 1 -0.4851 0.8400 -0.0004 29 1 0.6241 -2.5574 -0.8881 30 1 0.6247 -2.5562 0.8919 31 1 2.9737 -5.1707 1.1751 32 1 2.0229 -3.9556 2.0627 33 1 3.0249 -1.8030 2.7007 34 1 5.1549 -0.6219 3.1990 35 1 7.2722 -1.5474 2.3465 36 1 5.2875 -4.7290 0.5678 37 1 2.3841 -1.6648 -2.1244 38 1 1.3481 -0.9563 -4.2368 39 1 0.3219 -5.0044 -5.1201 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058305496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:36 Heat of formation + Delta-G solvation = -22.190867 kcal Electronic energy + Delta-G solvation = -28336.646792 eV Core-core repulsion = 24184.701753 eV Total energy + Delta-G solvation = -4151.945040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.73528 -40.12255 -39.39213 -38.09419 -36.34858 -35.41999 -33.11528 -32.19153 -31.45719 -30.64062 -30.27329 -27.72776 -26.15807 -23.64852 -23.17566 -22.85826 -22.65282 -21.62066 -19.22585 -17.52117 -17.04092 -16.74455 -16.68000 -16.42773 -15.76064 -15.72887 -15.29307 -15.18135 -14.96303 -14.64307 -13.96502 -13.85821 -13.49946 -13.30198 -13.09053 -13.03086 -12.75480 -12.56231 -12.48722 -12.06707 -12.05903 -11.62695 -11.36126 -11.28212 -11.13977 -11.07559 -10.92732 -10.80975 -10.39463 -9.99111 -9.50731 -9.25475 -9.07340 -8.83608 -8.71216 -8.58863 -8.49296 -7.96349 -6.37092 -4.45008 0.92310 1.32005 1.48444 1.75279 2.04932 3.05465 3.08585 3.18418 3.21794 3.55808 3.79386 4.15686 4.30910 4.36959 4.82133 4.85384 4.95875 4.97767 5.11506 5.21251 5.29275 5.36756 5.39270 5.50782 5.69515 5.71906 5.93732 5.96253 6.08311 6.15270 6.19819 6.42221 6.48735 6.50334 6.57149 6.75918 6.89937 7.00455 7.12536 7.29224 7.56478 7.84362 8.04320 8.35927 8.56938 8.72995 9.22146 10.68572 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.009964 B = 0.004699 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.345452 B = 5956.933316 C = 7767.427263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.073 3.927 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.230 3.770 10 N -0.583 5.583 11 C 0.166 3.834 12 C -0.144 4.144 13 C -0.032 4.032 14 C -0.183 4.183 15 C 0.089 3.911 16 N -0.496 5.496 17 C 0.115 3.885 18 C 0.562 3.438 19 O -0.551 6.551 20 C -0.148 4.148 21 C -0.022 4.022 22 C -0.127 4.127 23 C 0.007 3.993 24 Cl -0.067 7.067 25 C -0.166 4.166 26 C 0.149 3.851 27 F -0.125 7.125 28 H 0.267 0.733 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.142 0.858 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.250 -3.171 -2.270 4.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.132 4.132 3 Si 0.712 3.288 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.084 0.916 9 C 0.110 3.890 10 N -0.312 5.312 11 C 0.043 3.957 12 C -0.147 4.147 13 C -0.059 4.059 14 C -0.202 4.202 15 C -0.068 4.068 16 N -0.205 5.205 17 C -0.043 4.043 18 C 0.350 3.650 19 O -0.431 6.431 20 C -0.152 4.152 21 C -0.040 4.040 22 C -0.145 4.145 23 C -0.020 4.020 24 Cl -0.038 7.038 25 C -0.186 4.186 26 C 0.129 3.871 27 F -0.103 7.103 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.164 0.836 36 H 0.173 0.827 37 H 0.195 0.805 38 H 0.160 0.840 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.215 -3.836 -2.661 5.168 hybrid contribution -0.680 1.491 0.174 1.648 sum 1.536 -2.345 -2.488 3.748 Atomic orbital electron populations 1.69911 1.05946 1.27562 1.48185 1.24897 0.94724 0.99019 0.94546 0.86677 0.80126 0.83277 0.78717 1.20249 1.20965 1.19502 1.21429 0.93674 0.90077 1.52773 0.91643 1.19666 0.87504 0.82541 0.99243 1.48185 1.44249 1.34734 1.04028 1.20144 0.91869 0.97296 0.86405 1.21182 0.96765 0.97566 0.99168 1.21553 0.98604 0.92304 0.93425 1.22064 0.93783 1.01439 1.02961 1.22632 0.97692 0.92445 0.94042 1.67682 1.31381 1.08225 1.13227 1.22771 0.87276 0.98837 0.95370 1.17939 0.82106 0.81439 0.83551 1.90722 1.32518 1.32884 1.86931 1.20075 1.04023 0.94245 0.96853 1.22086 0.92990 0.94477 0.94424 1.21102 0.99509 0.99880 0.94057 1.20771 0.98708 0.93363 0.89180 1.98365 1.81382 1.91104 1.32934 1.20698 1.05079 0.95458 0.97316 1.17350 0.98413 0.77893 0.93465 1.91533 1.94294 1.32295 1.92226 0.92268 0.93756 0.94421 0.89792 0.89560 0.84342 0.85447 0.83632 0.82737 0.80468 0.84047 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.59 13.29 55.43 0.74 -20.85 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 18.54 29.54 -169.99 -5.02 13.52 16 4 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.54 -11.97 5.88 -34.44 -0.20 -12.18 16 8 H 0.07 1.52 6.91 -52.48 -0.36 1.16 16 9 C 0.23 4.81 4.72 -5.19 -0.02 4.79 16 10 N -0.58 -11.18 2.44 -177.62 -0.43 -11.61 16 11 C 0.17 2.78 5.57 -5.19 -0.03 2.76 16 12 C -0.14 -2.45 5.10 -104.48 -0.53 -2.99 16 13 C -0.03 -0.53 8.38 -39.28 -0.33 -0.86 16 14 C -0.18 -2.77 10.11 -39.44 -0.40 -3.17 16 15 C 0.09 1.37 11.18 -17.55 -0.20 1.18 16 16 N -0.50 -8.79 10.36 -13.25 -0.14 -8.92 16 17 C 0.11 2.04 10.77 -17.55 -0.19 1.85 16 18 C 0.56 11.31 6.90 -12.43 -0.09 11.22 16 19 O -0.55 -11.91 15.76 5.29 0.08 -11.83 16 20 C -0.15 -2.77 4.74 -104.91 -0.50 -3.26 16 21 C -0.02 -0.39 7.68 -39.20 -0.30 -0.69 16 22 C -0.13 -2.00 9.81 -39.60 -0.39 -2.39 16 23 C 0.01 0.10 6.32 -39.40 -0.25 -0.15 16 24 Cl -0.07 -0.85 28.95 -51.86 -1.50 -2.35 16 25 C -0.17 -2.44 9.79 -39.53 -0.39 -2.82 16 26 C 0.15 2.57 7.27 -38.97 -0.28 2.28 16 27 F -0.13 -2.23 16.65 2.25 0.04 -2.19 16 28 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 29 H 0.04 0.99 5.76 -51.92 -0.30 0.69 16 30 H 0.04 0.83 7.95 -51.93 -0.41 0.42 16 31 H 0.08 1.35 7.44 -51.93 -0.39 0.96 16 32 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 33 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 34 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.16 2.78 7.43 -52.48 -0.39 2.39 16 37 H 0.18 3.50 5.22 -52.49 -0.27 3.23 16 38 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -26.10 355.18 -8.86 -34.96 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.78 Total: 6.76 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -4.19 Total: -2.85 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.16 Total: -41.39 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.10 -8.86 -34.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058305496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.771 kcal (2) G-P(sol) polarization free energy of solvation -26.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds