Wall clock time and date at job start Tue Mar 31 2020 06:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38426 * 122.53768 * 2 1 4 4 C 1.33392 * 114.92250 * 180.26907 * 3 2 1 5 5 S 1.75888 * 109.59222 * 359.76846 * 4 3 2 6 6 C 1.33385 * 122.54302 * 179.81988 * 2 1 3 7 7 C 1.50703 * 125.20086 * 0.02825 * 6 2 1 8 8 N 1.46902 * 109.47026 * 101.51689 * 7 6 2 9 9 C 1.46903 * 110.99655 * 171.27553 * 8 7 6 10 10 C 1.53002 * 109.46832 * 188.26184 * 9 8 7 11 11 C 1.50706 * 109.47146 * 173.42453 * 10 9 8 12 12 O 1.21290 * 119.99535 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00036 * 179.97438 * 11 10 9 14 14 C 1.37094 * 119.99982 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00023 * 30.87984 * 14 13 11 16 16 C 1.38948 * 120.00068 * 210.88698 * 14 13 11 17 17 N 1.31412 * 120.00000 * 6.70785 * 16 14 13 18 18 Si 1.86798 * 120.00028 * 186.70819 * 16 14 13 19 19 H 1.48508 * 109.47002 * 60.00257 * 18 16 14 20 20 H 1.48507 * 109.46901 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47434 * 299.99875 * 18 16 14 22 22 C 1.46501 * 119.99770 * 0.02562 * 13 11 10 23 23 C 1.47198 * 109.47498 * 82.65241 * 22 13 11 24 24 N 8.67290 * 111.11898 * 218.39898 * 2 1 3 25 25 C 1.46897 * 111.00013 * 295.22068 * 8 7 6 26 26 C 1.52999 * 109.47174 * 149.92776 * 25 8 7 27 27 C 1.52992 * 109.47671 * 269.93153 * 25 8 7 28 28 H 1.08992 * 109.47609 * 275.09798 * 1 2 3 29 29 H 1.08997 * 109.47114 * 35.10331 * 1 2 3 30 30 H 1.09001 * 109.46807 * 155.09291 * 1 2 3 31 31 H 1.07997 * 122.54407 * 0.03890 * 3 2 1 32 32 H 1.07995 * 125.20781 * 179.75146 * 4 3 2 33 33 H 1.09000 * 109.47231 * 221.51459 * 7 6 2 34 34 H 1.09001 * 109.47048 * 341.51864 * 7 6 2 35 35 H 1.09002 * 109.46856 * 308.25437 * 9 8 7 36 36 H 1.08989 * 109.47599 * 68.25593 * 9 8 7 37 37 H 1.08999 * 109.46907 * 293.41854 * 10 9 8 38 38 H 1.08994 * 109.47861 * 53.42143 * 10 9 8 39 39 H 0.97003 * 120.00149 * 180.02562 * 17 16 14 40 40 H 1.09011 * 109.46705 * 202.65309 * 22 13 11 41 41 H 1.09001 * 109.47076 * 322.64666 * 22 13 11 42 42 H 1.09004 * 109.46932 * 29.93513 * 25 8 7 43 43 H 1.09004 * 109.47185 * 65.94800 * 26 25 8 44 44 H 1.09001 * 109.47622 * 185.94592 * 26 25 8 45 45 H 1.09001 * 109.47324 * 305.95421 * 26 25 8 46 46 H 1.09006 * 109.47463 * 63.11763 * 27 25 8 47 47 H 1.09002 * 109.47728 * 183.11785 * 27 25 8 48 48 H 1.09007 * 109.47262 * 303.12030 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0057 5 16 3.9386 -0.7304 -0.0048 6 6 2.2245 -1.1244 0.0035 7 6 1.6537 -2.5192 0.0073 8 7 1.7247 -3.0810 -1.3482 9 6 1.3711 -4.5068 -1.3462 10 6 1.6531 -5.1041 -2.7263 11 6 1.4445 -6.5959 -2.6803 12 8 1.1042 -7.1289 -1.6453 13 7 1.6360 -7.3377 -3.7891 14 6 1.4457 -8.6947 -3.7474 15 1 0.7140 -9.1169 -3.0746 16 6 2.1944 -9.5269 -4.5706 17 7 3.1740 -9.0295 -5.2916 18 14 1.8084 -11.3527 -4.6523 19 1 0.4129 -11.5430 -5.1235 20 1 2.7438 -12.0146 -5.5970 21 1 1.9611 -11.9520 -3.3023 22 6 2.0476 -6.6938 -5.0390 23 6 3.5061 -6.4949 -5.0315 24 7 4.6319 -6.3405 -5.0252 25 6 0.8699 -2.3280 -2.2756 26 6 1.4698 -2.3842 -3.6820 27 6 -0.5303 -2.9443 -2.2934 28 1 -0.3634 0.0913 1.0235 29 1 -0.3633 0.8407 -0.5909 30 1 -0.3633 -0.9321 -0.4328 31 1 1.7965 2.1464 0.0006 32 1 4.3077 1.7823 -0.0104 33 1 2.2280 -3.1449 0.6905 34 1 0.6139 -2.4853 0.3326 35 1 1.9665 -5.0278 -0.5964 36 1 0.3126 -4.6183 -1.1114 37 1 0.9748 -4.6648 -3.4578 38 1 2.6831 -4.8899 -3.0114 39 1 3.6964 -9.6104 -5.8666 40 1 1.7716 -7.3273 -5.8821 41 1 1.5497 -5.7286 -5.1316 42 1 0.8059 -1.2899 -1.9492 43 1 1.4367 -3.4095 -4.0504 44 1 0.8955 -1.7402 -4.3480 45 1 2.5045 -2.0430 -3.6495 46 1 -0.9795 -2.8543 -1.3043 47 1 -1.1487 -2.4204 -3.0223 48 1 -0.4603 -3.9973 -2.5662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058342391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:41 Heat of formation + Delta-G solvation = 49.452982 kcal Electronic energy + Delta-G solvation = -29259.935315 eV Core-core repulsion = 25442.841275 eV Total energy + Delta-G solvation = -3817.094040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.81028 -38.74333 -37.63145 -35.70524 -34.24712 -32.66744 -31.93610 -31.48573 -30.27079 -28.15321 -27.33130 -27.12332 -25.23640 -24.34341 -22.71637 -22.48264 -19.64021 -19.08525 -18.40924 -17.79223 -17.21527 -16.62499 -16.50258 -15.86242 -15.55400 -15.27901 -14.56869 -14.40907 -14.22746 -14.00399 -13.72192 -13.42933 -13.26990 -12.94578 -12.76990 -12.70342 -12.57915 -12.47225 -12.14964 -12.00052 -11.94531 -11.85074 -11.68279 -11.57200 -11.35955 -11.21330 -11.18376 -11.11221 -10.92702 -10.76134 -10.66662 -10.52521 -10.44315 -10.37659 -10.05758 -9.17002 -8.72276 -8.54604 -8.38629 -8.16532 -7.91900 -6.44130 -4.09398 0.90931 1.61437 2.01095 2.55335 3.14972 3.22442 3.24155 3.60949 3.83607 3.97940 4.06565 4.18787 4.67007 4.78633 4.86772 4.94293 4.96782 5.05211 5.16290 5.25464 5.25854 5.28362 5.35671 5.38610 5.44196 5.48332 5.53728 5.57637 5.68825 5.73210 5.80339 5.85617 5.86326 5.92984 5.96910 6.03089 6.16085 6.25489 6.29946 6.32300 6.42128 6.46537 6.53618 6.58024 7.16253 7.22230 7.46831 8.00821 8.30801 8.85357 9.02789 9.20143 9.76489 10.61996 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.019050 B = 0.002650 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.498505 B =10562.361176 C =10985.067996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.112 4.112 3 C -0.131 4.131 4 C -0.224 4.224 5 S 0.126 5.874 6 C -0.161 4.161 7 C 0.122 3.878 8 N -0.530 5.530 9 C 0.072 3.928 10 C -0.141 4.141 11 C 0.464 3.536 12 O -0.573 6.573 13 N -0.447 5.447 14 C -0.311 4.311 15 H 0.100 0.900 16 C 0.034 3.966 17 N -0.885 5.885 18 Si 0.931 3.069 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.226 3.774 23 C 0.248 3.752 24 N -0.474 5.474 25 C 0.068 3.932 26 C -0.155 4.155 27 C -0.191 4.191 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.135 0.865 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.274 0.726 40 H 0.122 0.878 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 19.443 5.361 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.126 4.126 3 C -0.162 4.162 4 C -0.360 4.360 5 S 0.392 5.608 6 C -0.279 4.279 7 C -0.007 4.007 8 N -0.254 5.254 9 C -0.056 4.056 10 C -0.181 4.181 11 C 0.252 3.748 12 O -0.455 6.455 13 N -0.168 5.168 14 C -0.438 4.438 15 H 0.118 0.882 16 C -0.169 4.169 17 N -0.524 5.524 18 Si 0.758 3.242 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.198 1.198 22 C 0.098 3.902 23 C -0.070 4.070 24 N -0.155 5.155 25 C -0.040 4.040 26 C -0.212 4.212 27 C -0.249 4.249 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.152 0.848 32 H 0.178 0.822 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.755 18.479 5.581 19.499 hybrid contribution -2.315 -0.206 0.005 2.324 sum -5.070 18.273 5.586 19.770 Atomic orbital electron populations 1.20639 0.90173 1.02882 1.02163 1.18807 0.97157 0.91677 1.04927 1.19952 0.92876 0.98989 1.04399 1.25617 0.99746 0.99772 1.10893 1.84482 1.05657 0.99101 1.71570 1.24217 0.96026 0.98391 1.09298 1.20508 0.99163 0.89506 0.91568 1.62268 1.53973 1.02937 1.06209 1.21861 1.00283 0.85750 0.97685 1.22011 1.03727 0.94002 0.98375 1.20316 0.82437 0.88374 0.83641 1.90538 1.50930 1.74009 1.30033 1.43490 1.59978 1.07260 1.06034 1.19553 1.20269 0.79916 1.24100 0.88191 1.25412 0.94176 1.00530 0.96778 1.69621 1.18641 1.36622 1.27523 0.85914 0.78152 0.81831 0.78316 1.19765 1.21021 1.19846 1.18626 0.82174 0.97591 0.91793 1.29193 0.95498 0.89640 0.92659 1.80899 1.12878 1.13259 1.08441 1.21816 0.90265 0.98058 0.93877 1.22187 1.01282 1.02921 0.94827 1.22594 0.97649 1.03051 1.01586 0.91451 0.91554 0.91216 0.84769 0.82246 0.89571 0.92725 0.90121 0.93183 0.88999 0.89267 0.91570 0.85991 0.90375 0.89883 0.91055 0.92912 0.92006 0.93044 0.92183 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.07 36.00 0.33 -0.49 16 2 C -0.11 -1.14 5.01 -106.25 -0.53 -1.67 16 3 C -0.13 -1.24 9.98 -41.21 -0.41 -1.65 16 4 C -0.22 -2.14 11.23 29.04 0.33 -1.81 16 5 S 0.13 1.42 23.33 -107.50 -2.51 -1.09 16 6 C -0.16 -1.82 5.20 -36.00 -0.19 -2.01 16 7 C 0.12 1.43 5.10 -4.97 -0.03 1.41 16 8 N -0.53 -6.94 4.43 -228.09 -1.01 -7.95 16 9 C 0.07 1.10 3.81 -3.82 -0.01 1.09 16 10 C -0.14 -2.37 2.59 -27.88 -0.07 -2.44 16 11 C 0.46 10.23 7.55 -10.98 -0.08 10.14 16 12 O -0.57 -14.55 15.67 5.55 0.09 -14.47 16 13 N -0.45 -10.24 2.58 -117.93 -0.30 -10.54 16 14 C -0.31 -7.92 9.11 -14.94 -0.14 -8.05 16 15 H 0.10 2.65 7.55 -52.49 -0.40 2.25 16 16 C 0.03 0.85 5.13 -17.47 -0.09 0.76 16 17 N -0.89 -22.52 9.30 55.50 0.52 -22.00 16 18 Si 0.93 19.93 29.56 -169.99 -5.02 14.90 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 C 0.23 4.41 4.90 -6.83 -0.03 4.38 16 23 C 0.25 5.49 12.48 -20.75 -0.26 5.23 16 24 N -0.47 -11.38 18.54 42.17 0.78 -10.60 16 25 C 0.07 0.78 2.25 -67.72 -0.15 0.63 16 26 C -0.15 -1.80 8.99 37.16 0.33 -1.47 16 27 C -0.19 -2.06 7.60 37.15 0.28 -1.77 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.59 4.42 -51.93 -0.23 0.36 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.09 1.04 7.98 -51.93 -0.41 0.62 16 34 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 35 H 0.08 1.40 7.74 -51.93 -0.40 0.99 16 36 H 0.05 0.76 6.00 -51.94 -0.31 0.45 16 37 H 0.09 1.32 3.30 -51.93 -0.17 1.15 16 38 H 0.09 1.60 7.39 -51.93 -0.38 1.21 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 40 H 0.12 2.43 6.89 -51.92 -0.36 2.08 16 41 H 0.08 1.16 6.75 -51.93 -0.35 0.81 16 42 H 0.08 0.92 4.38 -51.93 -0.23 0.70 16 43 H 0.07 0.87 4.45 -51.93 -0.23 0.64 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.53 7.15 -51.93 -0.37 0.16 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.93 4.65 -51.92 -0.24 0.69 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -30.37 384.87 -8.90 -39.28 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.51 Total: 4.40 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -0.73 Total: 2.27 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.02 Total: -51.09 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.47 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.51 Total: -1.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.37 -8.90 -39.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058342391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.731 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds