Wall clock time and date at job start Tue Mar 31 2020 05:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36011 * 117.00238 * 2 1 4 4 C 1.38712 * 119.97666 * 180.02562 * 3 2 1 5 5 C 1.38081 * 120.02561 * 179.97438 * 4 3 2 6 6 C 1.38922 * 119.97777 * 359.97438 * 5 4 3 7 7 S 1.76194 * 120.02779 * 179.97438 * 6 5 4 8 8 C 1.81399 * 102.99785 * 84.61456 * 7 6 5 9 9 H 1.09004 * 109.47347 * 307.50140 * 8 7 6 10 10 C 1.52999 * 109.47055 * 67.49860 * 8 7 6 11 11 C 1.50702 * 109.47217 * 187.49679 * 8 7 6 12 12 O 1.21274 * 120.00116 * 340.00261 * 11 8 7 13 13 N 1.34783 * 119.99863 * 159.99894 * 11 8 7 14 14 C 1.46499 * 119.99875 * 180.02562 * 13 11 8 15 15 C 1.50703 * 109.47219 * 270.00181 * 14 13 11 16 16 H 1.07995 * 119.99960 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99924 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99773 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99908 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47092 * 90.00176 * 19 17 15 21 21 H 1.48500 * 109.46956 * 209.99816 * 19 17 15 22 22 H 1.48491 * 109.47477 * 330.00145 * 19 17 15 23 23 C 1.46499 * 119.99788 * 0.02562 * 13 11 8 24 24 C 1.53000 * 109.47084 * 269.99354 * 23 13 11 25 25 C 1.47191 * 109.47352 * 180.02562 * 24 23 13 26 26 N 8.62655 * 129.51372 * 298.46455 * 2 1 3 27 27 C 1.38919 * 119.94483 * 0.25501 * 6 5 4 28 28 C 1.38090 * 119.97709 * 359.48756 * 27 6 5 29 29 H 1.09001 * 109.47086 * 59.99786 * 1 2 3 30 30 H 1.08996 * 109.47655 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46771 * 300.00400 * 1 2 3 32 32 H 1.08009 * 119.98689 * 359.95453 * 4 3 2 33 33 H 1.08007 * 120.01140 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47431 * 53.98416 * 10 8 7 35 35 H 1.09003 * 109.47028 * 173.97948 * 10 8 7 36 36 H 1.09003 * 109.47201 * 293.97927 * 10 8 7 37 37 H 1.09000 * 109.47172 * 30.00018 * 14 13 11 38 38 H 1.08997 * 109.46898 * 150.00278 * 14 13 11 39 39 H 0.97006 * 119.99877 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.47621 * 29.99955 * 23 13 11 41 41 H 1.08999 * 109.46864 * 150.00143 * 23 13 11 42 42 H 1.09002 * 109.47099 * 300.00563 * 24 23 13 43 43 H 1.09007 * 109.46882 * 60.00066 * 24 23 13 44 44 H 1.08008 * 120.01025 * 179.74667 * 27 6 5 45 45 H 1.08001 * 119.98798 * 180.22948 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4317 1.2838 -0.0005 5 6 4.0597 2.5136 -0.0011 6 6 3.3036 3.6791 -0.0016 7 16 4.1036 5.2489 -0.0016 8 6 4.4373 5.5368 -1.7612 9 1 4.9624 4.6768 -2.1769 10 6 3.1153 5.7355 -2.5052 11 6 5.2907 6.7692 -1.9157 12 8 5.3431 7.5865 -1.0212 13 7 5.9958 6.9632 -3.0479 14 6 6.8259 8.1610 -3.1977 15 6 6.0079 9.2648 -3.8171 16 1 4.9731 9.0915 -4.0730 17 6 6.5803 10.4962 -4.0560 18 7 5.8662 11.4595 -4.5960 19 14 8.3695 10.7965 -3.6113 20 1 9.2324 10.4480 -4.7686 21 1 8.5600 12.2280 -3.2652 22 1 8.7386 9.9523 -2.4468 23 6 5.9321 5.9761 -4.1285 24 6 7.0295 4.9290 -3.9282 25 6 6.9660 3.9376 -5.0143 26 7 6.9177 3.1719 -5.8506 27 6 1.9164 3.6057 0.0037 28 6 1.2905 2.3748 -0.0011 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0193 0.3776 -0.0002 33 1 5.1383 2.5693 -0.0011 34 1 2.5418 6.5266 -2.0222 35 1 3.3185 6.0138 -3.5393 36 1 2.5436 4.8076 -2.4844 37 1 7.1840 8.4797 -2.2188 38 1 7.6769 7.9352 -3.8402 39 1 6.2691 12.3258 -4.7644 40 1 4.9577 5.4879 -4.1178 41 1 6.0775 6.4760 -5.0862 42 1 8.0040 5.4173 -3.9389 43 1 6.8842 4.4291 -2.9704 44 1 1.3276 4.5112 0.0075 45 1 0.2120 2.3176 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058342932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:37 Heat of formation + Delta-G solvation = -10.683348 kcal Electronic energy + Delta-G solvation = -27528.842946 eV Core-core repulsion = 23638.734016 eV Total energy + Delta-G solvation = -3890.108930 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.39893 -39.57828 -37.67144 -36.97966 -35.41791 -33.38738 -32.44486 -31.48999 -31.08059 -30.41181 -28.00114 -27.68556 -24.90136 -23.85795 -23.09033 -22.53923 -22.14182 -18.96756 -18.58772 -17.76542 -17.33858 -17.00112 -16.83787 -16.48938 -16.15425 -15.81041 -14.97562 -14.83895 -14.66898 -14.55849 -14.21383 -14.10481 -13.83696 -13.74743 -13.48749 -13.18449 -13.00745 -12.77048 -12.54250 -12.41312 -12.35489 -12.30391 -11.93608 -11.79497 -11.70320 -11.64129 -11.43317 -11.23120 -11.10293 -10.87056 -10.60352 -10.19076 -10.04201 -9.62316 -9.35795 -9.21411 -8.64644 -8.48982 -7.99706 -7.64127 -6.13789 -4.13701 0.71759 1.02491 1.68523 2.56089 2.65843 2.73279 2.85873 3.09754 3.23396 3.32223 3.35118 3.42942 3.51077 4.05218 4.34886 4.41745 4.52162 4.69389 4.72062 4.72330 4.85257 4.89256 5.00540 5.04399 5.05215 5.07782 5.09533 5.19543 5.24932 5.31957 5.59925 5.64836 5.66590 5.70430 5.72653 5.94248 5.95000 6.10354 6.17468 6.32155 6.49923 6.85443 6.95017 7.11318 7.48536 7.52628 7.96275 8.38273 8.71124 8.89661 9.45439 10.99335 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.002718 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.047142 B =10299.810302 C =11349.074605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.147 3.853 4 C -0.161 4.161 5 C -0.034 4.034 6 C -0.167 4.167 7 S -0.075 6.075 8 C -0.108 4.108 9 H 0.103 0.897 10 C -0.143 4.143 11 C 0.533 3.467 12 O -0.511 6.511 13 N -0.586 5.586 14 C 0.216 3.784 15 C -0.532 4.532 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.895 5.895 19 Si 0.872 3.128 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.262 1.262 23 C 0.110 3.890 24 C -0.052 4.052 25 C 0.215 3.785 26 N -0.440 5.440 27 C -0.026 4.026 28 C -0.218 4.218 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.030 0.970 39 H 0.265 0.735 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.136 0.864 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 -21.669 8.109 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.102 3.898 4 C -0.182 4.182 5 C -0.054 4.054 6 C -0.278 4.278 7 S 0.158 5.842 8 C -0.239 4.239 9 H 0.121 0.879 10 C -0.202 4.202 11 C 0.317 3.683 12 O -0.385 6.385 13 N -0.317 5.317 14 C 0.095 3.905 15 C -0.570 4.570 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.533 5.533 19 Si 0.699 3.301 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.187 1.187 23 C -0.016 4.016 24 C -0.094 4.094 25 C -0.103 4.103 26 N -0.117 5.117 27 C -0.047 4.047 28 C -0.239 4.239 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.135 0.865 43 H 0.125 0.875 44 H 0.154 0.846 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.136 -21.618 8.157 24.183 hybrid contribution 0.287 -0.198 -0.711 0.792 sum -6.849 -21.816 7.446 24.048 Atomic orbital electron populations 1.23102 0.78093 1.04128 1.01623 1.86109 1.21683 1.26964 1.88248 1.19188 0.92460 0.84174 0.94010 1.20480 0.91384 0.98722 1.07592 1.21487 1.00189 0.90471 0.93289 1.21902 0.96143 0.98213 1.11579 1.86218 1.75380 1.16239 1.06336 1.23694 1.00693 1.01171 0.98353 0.87920 1.22046 0.94215 1.03066 1.00854 1.19402 0.80081 0.86014 0.82815 1.90731 1.62836 1.44972 1.40007 1.47774 1.46819 1.22573 1.14579 1.19775 0.90173 0.82294 0.98217 1.21282 0.99554 0.95260 1.40945 0.90611 1.24847 0.97886 0.95750 0.94415 1.69887 1.36564 1.03662 1.43153 0.86901 0.85448 0.78290 0.79449 1.20089 1.20942 1.18662 1.21479 0.97228 0.89428 0.93448 1.19909 1.04182 0.92607 0.92689 1.28977 0.93205 0.93869 0.94257 1.81175 1.08704 1.11017 1.10826 1.21452 0.93465 0.97390 0.92389 1.21298 1.00252 0.92173 1.10129 0.92399 0.88100 0.92421 0.84797 0.84383 0.90365 0.90810 0.91816 0.93638 0.95232 0.92489 0.90062 0.88239 0.86457 0.87521 0.84603 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.82 10.50 -19.78 -0.21 -3.03 16 3 C 0.15 1.41 6.69 -39.23 -0.26 1.15 16 4 C -0.16 -1.52 9.98 -39.46 -0.39 -1.92 16 5 C -0.03 -0.33 9.78 -39.39 -0.39 -0.72 16 6 C -0.17 -1.86 5.32 -39.08 -0.21 -2.06 16 7 S -0.07 -1.03 20.33 -107.50 -2.19 -3.22 16 8 C -0.11 -1.45 2.29 -27.88 -0.06 -1.51 16 9 H 0.10 1.11 6.12 -51.92 -0.32 0.79 16 10 C -0.14 -1.76 8.69 37.16 0.32 -1.44 16 11 C 0.53 9.57 6.85 -10.98 -0.08 9.50 16 12 O -0.51 -11.57 15.62 5.56 0.09 -11.49 16 13 N -0.59 -10.19 2.46 -175.06 -0.43 -10.62 16 14 C 0.22 4.66 4.23 -5.19 -0.02 4.64 16 15 C -0.53 -14.16 9.94 -34.44 -0.34 -14.50 16 16 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 19 Si 0.87 20.38 27.47 -169.99 -4.67 15.71 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 23 C 0.11 1.40 4.91 -4.04 -0.02 1.38 16 24 C -0.05 -0.51 5.89 -29.52 -0.17 -0.68 16 25 C 0.22 2.46 15.43 -20.80 -0.32 2.14 16 26 N -0.44 -6.23 18.53 42.11 0.78 -5.45 16 27 C -0.03 -0.26 9.49 -39.38 -0.37 -0.64 16 28 C -0.22 -1.93 9.03 -39.46 -0.36 -2.28 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.90 6.45 -51.93 -0.33 0.57 16 36 H 0.06 0.66 7.61 -51.93 -0.40 0.26 16 37 H 0.05 1.08 6.48 -51.93 -0.34 0.74 16 38 H 0.03 0.58 7.50 -51.93 -0.39 0.19 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.08 0.90 4.85 -51.93 -0.25 0.65 16 41 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.11 0.84 7.15 -51.92 -0.37 0.46 16 44 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.13 0.86 6.29 -52.49 -0.33 0.53 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -34.63 394.23 -7.76 -42.39 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.07 Total: -0.57 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.78 Total: -3.87 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 1.12 Total: -41.87 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.12 Total: -14.51 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -2.19 Total: -3.22 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.63 -7.76 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058342932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.709 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds