Wall clock time and date at job start Tue Mar 31 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36002 * 116.99954 * 2 1 4 4 C 1.38714 * 119.97303 * 179.97438 * 3 2 1 5 5 C 1.38087 * 120.02600 * 180.27660 * 4 3 2 6 6 C 1.38930 * 119.97140 * 359.48751 * 5 4 3 7 7 S 1.76200 * 120.02238 * 180.27617 * 6 5 4 8 8 C 1.81396 * 102.99910 * 95.57103 * 7 6 5 9 9 H 1.09004 * 109.46991 * 52.60842 * 8 7 6 10 10 C 1.52999 * 109.47101 * 292.60936 * 8 7 6 11 11 C 1.50703 * 109.47236 * 172.60957 * 8 7 6 12 12 O 1.21277 * 119.99580 * 25.00269 * 11 8 7 13 13 N 1.34779 * 120.00017 * 204.99682 * 11 8 7 14 14 C 1.46495 * 119.99759 * 180.02562 * 13 11 8 15 15 C 1.50700 * 109.47233 * 90.00482 * 14 13 11 16 16 H 1.08004 * 119.99732 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00009 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00146 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99924 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47099 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47234 * 119.99708 * 19 17 15 22 22 H 1.48497 * 109.47409 * 240.00154 * 19 17 15 23 23 C 1.46502 * 120.00030 * 0.02562 * 13 11 8 24 24 C 1.53006 * 109.47128 * 89.99632 * 23 13 11 25 25 C 1.47191 * 109.46974 * 180.02562 * 24 23 13 26 26 N 8.56198 * 83.49466 * 319.33834 * 2 1 3 27 27 C 1.38921 * 119.95113 * 0.51167 * 6 5 4 28 28 C 1.38096 * 119.97086 * 359.74390 * 27 6 5 29 29 H 1.09002 * 109.47151 * 300.00091 * 1 2 3 30 30 H 1.08999 * 109.47100 * 60.00392 * 1 2 3 31 31 H 1.09002 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.98656 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.01501 * 179.72422 * 5 4 3 34 34 H 1.08996 * 109.47158 * 305.79287 * 10 8 7 35 35 H 1.09004 * 109.46964 * 65.79124 * 10 8 7 36 36 H 1.08997 * 109.47317 * 185.78753 * 10 8 7 37 37 H 1.09003 * 109.46727 * 210.00437 * 14 13 11 38 38 H 1.08996 * 109.47104 * 329.99827 * 14 13 11 39 39 H 0.96996 * 119.99705 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.47058 * 209.99603 * 23 13 11 41 41 H 1.09002 * 109.47123 * 330.00242 * 23 13 11 42 42 H 1.09000 * 109.47017 * 300.00378 * 24 23 13 43 43 H 1.09006 * 109.46543 * 59.99792 * 24 23 13 44 44 H 1.07993 * 120.01124 * 179.71899 * 27 6 5 45 45 H 1.07999 * 119.98118 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4317 1.2837 0.0005 5 6 4.0597 2.5135 0.0063 6 6 3.3036 3.6790 0.0008 7 16 4.1036 5.2489 0.0008 8 6 4.1431 5.6867 -1.7591 9 1 3.1390 5.6077 -2.1758 10 6 5.0800 4.7316 -2.5013 11 6 4.6414 7.1005 -1.9140 12 8 5.3481 7.5914 -1.0593 13 7 4.3019 7.8193 -3.0024 14 6 4.7868 9.1934 -3.1532 15 6 6.1056 9.1836 -3.8823 16 1 6.5394 8.2473 -4.2010 17 6 6.7589 10.3698 -4.1414 18 7 6.2308 11.5099 -3.7528 19 14 8.3940 10.3575 -5.0446 20 1 8.7691 8.9581 -5.3703 21 1 8.2724 11.1427 -6.2992 22 1 9.4406 10.9619 -4.1818 23 6 3.4479 7.2264 -4.0346 24 6 1.9803 7.5083 -3.7062 25 6 1.1223 6.9121 -4.7430 26 7 0.4590 6.4531 -5.5430 27 6 1.9163 3.6058 0.0003 28 6 1.2905 2.3747 -0.0002 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0193 0.3776 0.0014 33 1 5.1382 2.5693 0.0112 34 1 6.0577 4.7342 -2.0195 35 1 4.6654 3.7238 -2.4766 36 1 5.1842 5.0563 -3.5365 37 1 4.0611 9.7743 -3.7225 38 1 4.9191 9.6421 -2.1687 39 1 6.6903 12.3443 -3.9355 40 1 3.6935 7.6614 -5.0033 41 1 3.6123 6.1494 -4.0676 42 1 1.7347 7.0733 -2.7374 43 1 1.8159 8.5854 -3.6731 44 1 1.3276 4.5111 0.0006 45 1 0.2120 2.3176 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058342933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:40 Heat of formation + Delta-G solvation = -16.566613 kcal Electronic energy + Delta-G solvation = -27512.995449 eV Core-core repulsion = 23622.631402 eV Total energy + Delta-G solvation = -3890.364048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.38903 -39.45455 -37.65957 -36.90858 -35.31044 -33.36292 -32.45375 -31.49047 -30.90691 -30.38549 -27.70437 -27.39374 -24.79483 -23.92931 -23.03138 -22.67750 -22.28887 -18.95515 -18.57409 -17.68002 -17.25116 -16.92349 -16.48950 -16.48733 -16.14512 -15.68187 -14.97346 -14.78564 -14.67797 -14.46333 -14.17158 -14.13109 -13.86439 -13.74976 -13.35597 -13.12520 -12.98099 -12.72830 -12.48166 -12.41787 -12.35222 -12.06049 -11.84530 -11.70427 -11.65979 -11.45342 -11.27783 -11.20796 -11.00641 -10.86759 -10.66189 -10.21581 -10.02548 -9.72422 -9.33839 -9.10999 -8.50050 -8.47073 -7.92411 -7.62067 -6.11117 -4.15769 0.73521 1.03509 1.70819 2.58454 2.69290 2.76383 2.86873 3.19371 3.27054 3.35635 3.38828 3.44761 3.60268 4.11870 4.39630 4.41884 4.53451 4.69824 4.72837 4.80581 4.90146 4.95427 5.01954 5.06098 5.09967 5.11698 5.14015 5.24650 5.27219 5.37865 5.62303 5.67098 5.70262 5.72731 5.77092 5.95216 6.00117 6.11922 6.17279 6.33984 6.85800 6.95920 7.30699 7.37273 7.52456 7.84664 8.13095 8.15952 8.75716 8.91787 9.49910 10.97104 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.002717 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.286885 B =10303.309412 C =11460.562003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.147 3.853 4 C -0.162 4.162 5 C -0.028 4.028 6 C -0.166 4.166 7 S -0.077 6.077 8 C -0.109 4.109 9 H 0.101 0.899 10 C -0.141 4.141 11 C 0.530 3.470 12 O -0.512 6.512 13 N -0.590 5.590 14 C 0.245 3.755 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.113 3.887 24 C -0.052 4.052 25 C 0.216 3.784 26 N -0.444 5.444 27 C -0.032 4.032 28 C -0.218 4.218 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.048 0.952 39 H 0.263 0.737 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.134 0.866 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 -19.659 6.389 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.101 3.899 4 C -0.182 4.182 5 C -0.049 4.049 6 C -0.277 4.277 7 S 0.156 5.844 8 C -0.240 4.240 9 H 0.119 0.881 10 C -0.200 4.200 11 C 0.314 3.686 12 O -0.387 6.387 13 N -0.322 5.322 14 C 0.127 3.873 15 C -0.567 4.567 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.724 3.276 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.013 4.013 24 C -0.094 4.094 25 C -0.102 4.102 26 N -0.121 5.121 27 C -0.053 4.053 28 C -0.238 4.238 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.138 0.862 44 H 0.152 0.848 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.779 -19.390 6.527 23.608 hybrid contribution 0.225 -0.384 -1.349 1.420 sum -11.555 -19.774 5.178 23.480 Atomic orbital electron populations 1.23100 0.78117 1.04122 1.01605 1.86108 1.21658 1.26967 1.88261 1.19185 0.92473 0.84151 0.94058 1.20498 0.91341 0.98760 1.07598 1.21483 1.00334 0.90287 0.92766 1.21902 0.95902 0.98437 1.11486 1.86206 1.76069 1.15599 1.06556 1.23727 1.03795 0.98373 0.98091 0.88103 1.22000 0.99789 0.97472 1.00722 1.19389 0.81318 0.85315 0.82578 1.90733 1.36317 1.70669 1.40999 1.48129 1.48315 1.16883 1.18907 1.19405 0.94504 0.74660 0.98762 1.21431 1.05401 0.93005 1.36876 0.92279 1.24914 0.97862 0.95351 0.95839 1.69926 1.39100 0.97667 1.46454 0.86463 0.83710 0.78110 0.79273 1.19777 1.20997 1.20852 1.21397 0.86552 0.99211 0.94160 1.19927 0.92988 1.02980 0.93486 1.29089 0.93711 0.93219 0.94140 1.81213 1.10293 1.09987 1.10616 1.21460 0.93513 0.97375 0.92959 1.21279 1.00212 0.92202 1.10137 0.92429 0.92430 0.88099 0.84754 0.84185 0.90429 0.91835 0.91055 0.94517 0.93380 0.92686 0.88467 0.90575 0.87629 0.86234 0.84811 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.85 10.50 -19.75 -0.21 -3.06 16 3 C 0.15 1.42 6.69 -39.23 -0.26 1.16 16 4 C -0.16 -1.55 9.98 -39.46 -0.39 -1.94 16 5 C -0.03 -0.29 9.47 -39.38 -0.37 -0.66 16 6 C -0.17 -1.87 5.31 -39.07 -0.21 -2.08 16 7 S -0.08 -1.08 20.39 -107.50 -2.19 -3.28 16 8 C -0.11 -1.49 2.29 -27.88 -0.06 -1.55 16 9 H 0.10 1.14 5.89 -51.92 -0.31 0.83 16 10 C -0.14 -1.75 8.75 37.16 0.33 -1.42 16 11 C 0.53 9.77 6.80 -10.98 -0.07 9.69 16 12 O -0.51 -11.91 15.72 5.56 0.09 -11.82 16 13 N -0.59 -10.64 2.46 -175.06 -0.43 -11.07 16 14 C 0.25 5.71 5.16 -5.20 -0.03 5.68 16 15 C -0.53 -13.87 9.39 -34.44 -0.32 -14.20 16 16 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 19 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 C 0.11 1.49 4.96 -4.04 -0.02 1.47 16 24 C -0.05 -0.54 5.86 -29.52 -0.17 -0.72 16 25 C 0.22 2.58 15.43 -20.76 -0.32 2.26 16 26 N -0.44 -6.41 18.54 42.16 0.78 -5.63 16 27 C -0.03 -0.32 9.79 -39.38 -0.39 -0.71 16 28 C -0.22 -1.95 9.03 -39.46 -0.36 -2.31 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.67 7.58 -51.93 -0.39 0.27 16 36 H 0.07 0.87 6.98 -51.93 -0.36 0.51 16 37 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 41 H 0.08 0.86 5.24 -51.93 -0.27 0.59 16 42 H 0.11 0.91 7.23 -51.93 -0.38 0.54 16 43 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 45 H 0.13 0.88 6.29 -52.49 -0.33 0.55 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -33.40 398.72 -8.14 -41.53 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.14 Total: -1.63 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.76 Total: -2.60 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 1.09 Total: -41.20 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.12 Total: -14.88 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.19 Total: -3.28 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.40 -8.14 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058342933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.966 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds