Wall clock time and date at job start Tue Mar 31 2020 06:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00200 * 2 1 4 4 H 1.48498 * 109.47427 * 239.99644 * 3 2 1 5 5 H 1.48501 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47452 * 119.99259 * 3 2 1 7 7 C 1.38817 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99961 * 154.72691 * 7 2 1 9 9 N 1.36942 * 119.99890 * 334.73579 * 7 2 1 10 10 C 1.46499 * 119.99945 * 129.71614 * 9 7 2 11 11 C 1.53002 * 117.49990 * 3.86609 * 10 9 7 12 12 C 1.52995 * 117.49965 * 295.20837 * 10 9 7 13 13 S 1.65600 * 119.99789 * 309.71174 * 9 7 2 14 14 O 1.42096 * 106.40359 * 23.54523 * 13 9 7 15 15 O 1.42102 * 106.40076 * 156.46303 * 13 9 7 16 16 C 1.76192 * 107.21762 * 270.00205 * 13 9 7 17 17 C 1.38238 * 120.00501 * 269.72723 * 16 13 9 18 18 C 1.38232 * 120.00464 * 179.74754 * 17 16 13 19 19 C 1.38241 * 119.99850 * 0.52776 * 18 17 16 20 20 C 1.50694 * 119.99891 * 179.76595 * 19 18 17 21 21 C 1.53006 * 109.47053 * 59.98299 * 20 19 18 22 22 C 1.52999 * 109.47070 * 179.97438 * 21 20 19 23 23 C 1.52995 * 109.47298 * 59.99499 * 22 21 20 24 24 C 1.52989 * 109.47528 * 300.00233 * 23 22 21 25 25 C 1.52999 * 109.47275 * 59.99888 * 24 23 22 26 26 C 1.38238 * 119.99803 * 359.74843 * 19 18 17 27 27 C 1.38236 * 120.00001 * 359.97438 * 26 19 18 28 28 H 0.96997 * 120.00281 * 355.08948 * 1 2 3 29 29 H 1.08997 * 115.54579 * 149.53371 * 10 9 7 30 30 H 1.09003 * 117.49876 * 359.97438 * 11 10 9 31 31 H 1.08999 * 117.49645 * 145.01772 * 11 10 9 32 32 H 1.08998 * 117.49934 * 214.98110 * 12 10 9 33 33 H 1.09004 * 117.49734 * 359.97438 * 12 10 9 34 34 H 1.08000 * 119.99490 * 359.97438 * 17 16 13 35 35 H 1.07996 * 120.00065 * 180.29586 * 18 17 16 36 36 H 1.09005 * 109.46819 * 179.97438 * 20 19 18 37 37 H 1.08996 * 109.46553 * 299.99913 * 21 20 19 38 38 H 1.08999 * 109.46540 * 59.99463 * 21 20 19 39 39 H 1.09005 * 109.46936 * 299.99695 * 22 21 20 40 40 H 1.08993 * 109.46732 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.47250 * 179.97438 * 23 22 21 42 42 H 1.09005 * 109.46967 * 60.00215 * 23 22 21 43 43 H 1.09002 * 109.47392 * 299.99660 * 24 23 22 44 44 H 1.09004 * 109.47481 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.47173 * 180.02562 * 25 24 23 46 46 H 1.08996 * 109.47597 * 60.00325 * 25 24 23 47 47 H 1.07997 * 119.99965 * 179.97438 * 26 19 18 48 48 H 1.07997 * 119.99889 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0127 -1.2471 -0.3987 9 7 1.4238 -2.3312 0.5072 10 6 1.4179 -3.5685 -0.2771 11 6 2.1612 -3.5609 -1.6144 12 6 0.6307 -3.5697 -1.5890 13 16 0.7214 -2.2977 2.0065 14 8 0.3891 -0.9403 2.2637 15 8 -0.2347 -3.3489 2.0252 16 6 1.9652 -2.7356 3.1750 17 6 2.1507 -4.0605 3.5235 18 6 3.1300 -4.4046 4.4364 19 6 3.9167 -3.4227 5.0091 20 6 4.9808 -3.7973 6.0082 21 6 5.9886 -4.7418 5.3500 22 6 7.0694 -5.1216 6.3642 23 6 6.4222 -5.8204 7.5615 24 6 5.4144 -4.8760 8.2197 25 6 4.3337 -4.4962 7.2055 26 6 3.7275 -2.0973 4.6649 27 6 2.7520 -1.7538 3.7477 28 1 -0.4850 0.8369 0.0719 29 1 1.4329 -4.4920 0.3017 30 1 2.6542 -2.6350 -1.9109 31 1 2.6647 -4.4795 -1.9155 32 1 0.1280 -4.4940 -1.8735 33 1 0.1169 -2.6498 -1.8684 34 1 1.5328 -4.8270 3.0797 35 1 3.2780 -5.4401 4.7049 36 1 5.4940 -2.8973 6.3470 37 1 5.4754 -5.6417 5.0111 38 1 6.4499 -4.2436 4.4972 39 1 7.5825 -4.2214 6.7026 40 1 7.7875 -5.7940 5.8951 41 1 7.1921 -6.0914 8.2838 42 1 5.9091 -6.7206 7.2231 43 1 5.9275 -3.9758 8.5582 44 1 4.9530 -5.3740 9.0725 45 1 3.6159 -3.8230 7.6744 46 1 3.8205 -5.3963 6.8671 47 1 4.3418 -1.3301 5.1126 48 1 2.6039 -0.7183 3.4792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058356975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:34 Heat of formation + Delta-G solvation = -38.388960 kcal Electronic energy + Delta-G solvation = -29457.179718 eV Core-core repulsion = 25603.983815 eV Total energy + Delta-G solvation = -3853.195903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.150 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.71375 -37.65859 -37.06879 -35.67009 -34.15005 -33.21751 -32.65745 -30.92011 -30.63079 -30.57488 -28.63461 -24.91981 -23.58955 -22.72192 -22.43200 -21.50285 -20.96327 -20.52251 -19.59488 -18.79147 -17.60018 -16.37027 -15.96816 -15.74777 -15.26570 -15.12253 -14.66364 -14.36117 -14.24417 -14.12890 -13.96697 -13.78137 -13.25427 -13.14912 -13.11838 -12.84552 -12.36823 -12.28650 -12.06121 -11.89021 -11.68405 -11.39982 -11.33982 -11.31878 -10.97535 -10.86177 -10.70812 -10.55812 -10.51608 -10.45670 -10.37206 -10.31636 -10.26222 -10.22135 -9.89794 -9.58931 -9.35505 -8.69422 -8.56239 -8.52893 -7.48935 -6.50079 -4.18242 1.36703 1.78428 1.97841 3.22805 3.29232 3.29648 3.91097 4.16883 4.44633 4.54082 4.60680 4.65175 4.80684 4.92960 4.94513 5.07207 5.10648 5.21113 5.29739 5.33447 5.36077 5.37155 5.39187 5.48208 5.62153 5.72330 5.76845 5.81263 5.83216 5.86578 5.94731 5.96453 5.96657 6.00109 6.05008 6.15553 6.18272 6.23385 6.28518 6.29975 6.45048 6.51495 6.64790 6.82927 6.84809 6.89819 7.15395 7.36005 7.41940 7.57505 8.23671 8.91176 9.33795 10.54587 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003290 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.857978 B = 8508.787024 C = 9005.130200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.289 4.289 8 H 0.082 0.918 9 N -0.791 5.791 10 C 0.099 3.901 11 C -0.182 4.182 12 C -0.188 4.188 13 S 2.579 3.421 14 O -0.947 6.947 15 O -1.008 7.008 16 C -0.662 4.662 17 C -0.034 4.034 18 C -0.143 4.143 19 C -0.049 4.049 20 C -0.048 4.048 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.112 4.112 26 C -0.145 4.145 27 C -0.017 4.017 28 H 0.280 0.720 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.119 0.881 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.504 -8.045 9.073 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.153 4.153 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.100 0.900 9 N -0.613 5.613 10 C -0.010 4.010 11 C -0.221 4.221 12 C -0.228 4.228 13 S 2.677 3.323 14 O -0.935 6.935 15 O -0.998 6.998 16 C -0.740 4.740 17 C -0.053 4.053 18 C -0.162 4.162 19 C -0.050 4.050 20 C -0.067 4.067 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.149 4.149 26 C -0.164 4.164 27 C -0.036 4.036 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.137 0.863 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.420 -7.891 9.501 16.159 hybrid contribution 0.961 0.603 0.440 1.217 sum 11.381 -7.288 9.941 16.777 Atomic orbital electron populations 1.69898 1.07064 1.30031 1.34582 1.25658 0.94849 1.00630 0.94159 0.86185 0.79535 0.81144 0.79000 1.19798 1.20666 1.19313 1.18918 0.98384 0.85841 1.40292 0.89995 1.52320 1.73285 1.12571 1.23162 1.21194 1.04366 0.88366 0.87081 1.23148 0.94959 1.02429 1.01534 1.23213 0.93746 1.02569 1.03277 1.09384 0.76589 0.73287 0.73029 1.93423 1.81826 1.33809 1.84468 1.93327 1.60599 1.58773 1.87102 1.32519 1.22308 0.99970 1.19189 1.20863 0.95040 0.94953 0.94452 1.20968 0.97343 0.98667 0.99229 1.19921 0.95625 0.93522 0.95893 1.20206 0.93976 0.98885 0.93589 1.21600 0.96091 0.99276 0.97900 1.21540 0.97654 1.00373 0.96079 1.21544 0.98317 0.98565 0.97335 1.21539 0.96790 0.99473 0.97832 1.21606 0.97610 1.00532 0.95175 1.21132 0.99789 0.95470 1.00018 1.20922 0.91447 0.99225 0.92043 0.90959 0.87755 0.87651 0.90236 0.90112 0.87891 0.85435 0.86394 0.90534 0.91636 0.91691 0.92045 0.92020 0.92267 0.92014 0.92040 0.92061 0.91823 0.91634 0.86272 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.34 11.76 55.49 0.65 -20.69 16 2 C 0.07 1.66 3.98 -17.43 -0.07 1.59 16 3 Si 0.92 19.88 29.63 -169.99 -5.04 14.84 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.29 -7.11 7.92 -15.06 -0.12 -7.23 16 8 H 0.08 1.90 7.31 -52.49 -0.38 1.52 16 9 N -0.79 -19.01 3.03 -53.43 -0.16 -19.17 16 10 C 0.10 2.08 6.02 -67.93 -0.41 1.67 16 11 C -0.18 -3.30 9.82 -26.70 -0.26 -3.56 16 12 C -0.19 -3.71 10.35 -26.70 -0.28 -3.98 16 13 S 2.58 64.39 5.46 -107.50 -0.59 63.80 16 14 O -0.95 -26.20 13.50 -57.17 -0.77 -26.97 16 15 O -1.01 -26.79 16.50 -57.17 -0.94 -27.74 16 16 C -0.66 -14.10 5.97 -39.58 -0.24 -14.33 16 17 C -0.03 -0.64 9.52 -39.58 -0.38 -1.02 16 18 C -0.14 -2.25 8.71 -39.58 -0.34 -2.60 16 19 C -0.05 -0.73 4.78 -104.62 -0.50 -1.23 16 20 C -0.05 -0.55 2.36 -91.77 -0.22 -0.76 16 21 C -0.11 -1.14 5.02 -26.73 -0.13 -1.27 16 22 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 23 C -0.12 -0.95 5.92 -26.74 -0.16 -1.10 16 24 C -0.12 -1.00 5.92 -26.74 -0.16 -1.15 16 25 C -0.11 -1.14 5.02 -26.73 -0.13 -1.28 16 26 C -0.15 -2.39 9.67 -39.58 -0.38 -2.78 16 27 C -0.02 -0.35 9.52 -39.58 -0.38 -0.72 16 28 H 0.28 7.31 8.32 -40.82 -0.34 6.97 16 29 H 0.10 2.01 8.09 -51.93 -0.42 1.59 16 30 H 0.11 2.01 6.70 -51.93 -0.35 1.66 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.10 2.29 8.14 -51.93 -0.42 1.86 16 34 H 0.13 2.29 7.61 -52.49 -0.40 1.89 16 35 H 0.12 1.53 7.11 -52.49 -0.37 1.15 16 36 H 0.08 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.06 0.68 7.39 -51.93 -0.38 0.30 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.68 7.39 -51.93 -0.38 0.30 16 47 H 0.12 1.64 7.95 -52.49 -0.42 1.23 16 48 H 0.13 2.72 7.62 -52.49 -0.40 2.32 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -30.46 390.56 -12.98 -43.44 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -7.70 Total: 7.52 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: -4.31 Total: -40.92 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.49 Total: -39.86 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -1.72 Total: -54.71 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.04 Total: 14.84 kcal Atomic # 16 Polarization: 64.39 SS G_CDS: -0.59 Total: 63.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.46 -12.98 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058356975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.055 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds