Wall clock time and date at job start Tue Mar 31 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35997 * 117.00154 * 2 1 4 4 C 1.38690 * 120.04281 * 359.97438 * 3 2 1 5 5 C 1.38206 * 120.08834 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.17891 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.95416 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47041 * 265.00269 * 7 6 5 9 9 C 1.50704 * 109.47041 * 179.97438 * 8 7 6 10 10 O 1.21290 * 119.99913 * 359.72479 * 9 8 7 11 11 N 1.34780 * 119.99834 * 179.97438 * 9 8 7 12 12 C 1.37093 * 119.99460 * 180.02562 * 11 9 8 13 13 H 1.08002 * 119.99684 * 224.39125 * 12 11 9 14 14 C 1.38948 * 120.00244 * 44.39712 * 12 11 9 15 15 N 1.31409 * 120.00158 * 17.95551 * 14 12 11 16 16 Si 1.86800 * 120.00105 * 197.94964 * 14 12 11 17 17 H 1.48504 * 109.47215 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47298 * 120.00249 * 16 14 12 19 19 H 1.48503 * 109.47377 * 240.00334 * 16 14 12 20 20 C 1.46492 * 120.00034 * 359.97438 * 11 9 8 21 21 C 1.52999 * 117.49768 * 183.27193 * 20 11 9 22 22 C 1.53008 * 117.49703 * 114.61409 * 20 11 9 23 23 C 1.38644 * 120.09010 * 0.23357 * 6 5 4 24 24 O 1.35993 * 120.04642 * 179.74085 * 23 6 5 25 25 C 1.42905 * 116.99605 * 90.00072 * 24 23 6 26 26 C 1.38955 * 120.04725 * 179.97438 * 3 2 1 27 27 O 1.36094 * 120.08822 * 0.02562 * 26 3 2 28 28 C 1.42905 * 116.99737 * 90.00583 * 27 26 3 29 29 H 1.09001 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47194 * 300.00034 * 1 2 3 31 31 H 1.09001 * 109.47229 * 60.00211 * 1 2 3 32 32 H 1.07999 * 119.95183 * 359.95505 * 4 3 2 33 33 H 1.07994 * 119.90976 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47124 * 145.00105 * 7 6 5 35 35 H 1.08999 * 109.46722 * 25.00183 * 7 6 5 36 36 H 1.09000 * 109.47295 * 59.99942 * 8 7 6 37 37 H 1.09004 * 109.47083 * 299.99993 * 8 7 6 38 38 H 0.97000 * 120.00128 * 174.96484 * 15 14 12 39 39 H 1.08997 * 115.55445 * 328.94890 * 20 11 9 40 40 H 1.08999 * 117.49996 * 0.02562 * 21 20 11 41 41 H 1.09006 * 117.50101 * 145.01890 * 21 20 11 42 42 H 1.08996 * 117.49644 * 214.97703 * 22 20 11 43 43 H 1.08996 * 117.49919 * 359.97438 * 22 20 11 44 44 H 1.09001 * 109.46830 * 179.97438 * 25 24 23 45 45 H 1.08994 * 109.47207 * 300.00094 * 25 24 23 46 46 H 1.08996 * 109.47118 * 60.00441 * 25 24 23 47 47 H 1.08993 * 109.47512 * 59.99697 * 28 27 26 48 48 H 1.08993 * 109.46977 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.46642 * 299.99732 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2920 2.3755 -0.0005 5 6 1.9185 3.6074 0.0000 6 6 3.2988 3.6851 0.0005 7 6 3.9767 5.0311 0.0005 8 6 4.3189 5.4297 -1.4364 9 6 4.9962 6.7760 -1.4365 10 8 5.1820 7.3614 -0.3906 11 7 5.3909 7.3317 -2.5992 12 6 6.0076 8.5561 -2.5991 13 1 5.7208 9.3051 -3.3224 14 6 7.0015 8.8334 -1.6686 15 7 7.5987 7.8508 -1.0325 16 14 7.4889 10.6031 -1.3220 17 1 6.6722 11.5152 -2.1623 18 1 7.2546 10.9093 0.1121 19 1 8.9273 10.7917 -1.6397 20 6 5.1621 6.6268 -3.8628 21 6 5.7012 7.2737 -5.1403 22 6 4.1958 7.2650 -4.8628 23 6 4.0603 2.5265 -0.0044 24 8 5.4180 2.6040 -0.0091 25 6 6.0702 2.6386 1.2619 26 6 3.4340 1.2856 0.0005 27 8 4.1779 0.1459 0.0005 28 6 4.5331 -0.3969 -1.2728 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.2135 2.3189 -0.0017 33 1 1.3282 4.5117 -0.0008 34 1 4.8917 4.9770 0.5903 35 1 3.3081 5.7745 0.4345 36 1 3.4038 5.4838 -2.0262 37 1 4.9875 4.6862 -1.8703 38 1 8.3416 8.0387 -0.4378 39 1 5.1792 5.5385 -3.8039 40 1 6.2264 8.2236 -5.0404 41 1 6.0727 6.6110 -5.9219 42 1 3.5776 6.5965 -5.4620 43 1 3.7300 8.2090 -4.5803 44 1 7.1486 2.7000 1.1153 45 1 5.7291 3.5094 1.8217 46 1 5.8306 1.7323 1.8180 47 1 5.1184 0.3349 -1.8293 48 1 5.1232 -1.3021 -1.1300 49 1 3.6279 -0.6380 -1.8302 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058392255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:31 Heat of formation + Delta-G solvation = -77.219270 kcal Electronic energy + Delta-G solvation = -31946.912120 eV Core-core repulsion = 27649.279537 eV Total energy + Delta-G solvation = -4297.632583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 349.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.81696 -38.95250 -38.48438 -37.66711 -36.56459 -35.98905 -33.18472 -32.37844 -30.83253 -30.14463 -29.02865 -27.55849 -27.10927 -26.27917 -25.27365 -23.41417 -22.23465 -21.66885 -21.18708 -20.83309 -18.95293 -18.55424 -17.32639 -17.21616 -16.46357 -16.17426 -16.12943 -15.96493 -15.39961 -14.95843 -14.87160 -14.67198 -14.59390 -14.31104 -14.03483 -13.96099 -13.56505 -13.21921 -12.87437 -12.86455 -12.53182 -12.19760 -12.02709 -11.91000 -11.76347 -11.42516 -11.39004 -11.22696 -10.92890 -10.87367 -10.84214 -10.69663 -10.62113 -10.35226 -10.20473 -10.09028 -9.90349 -9.67562 -9.54053 -8.66422 -8.63089 -8.13470 -7.85662 -6.94836 -6.04759 -3.80116 0.99416 1.24920 2.95597 3.28620 3.32255 3.41730 3.43538 3.78180 4.11589 4.21525 4.32937 4.69634 4.83278 4.85365 4.88341 4.90946 5.01596 5.10708 5.23020 5.28580 5.32676 5.34073 5.38361 5.40631 5.50343 5.54054 5.64063 5.65066 5.75971 5.78861 5.83953 5.85400 5.90109 6.05156 6.14930 6.22951 6.25592 6.29550 6.34625 6.47062 6.56437 6.76092 6.80194 6.84684 6.98231 6.99908 7.36306 7.67714 7.74568 8.34303 9.14243 9.24296 9.74480 10.38856 11.04295 Molecular weight = 349.18amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.002917 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.495553 B = 9595.445141 C =10057.589776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.110 3.890 4 C -0.201 4.201 5 C -0.069 4.069 6 C -0.112 4.112 7 C -0.053 4.053 8 C -0.122 4.122 9 C 0.487 3.513 10 O -0.536 6.536 11 N -0.431 5.431 12 C -0.348 4.348 13 H 0.075 0.925 14 C 0.074 3.926 15 N -0.833 5.833 16 Si 0.910 3.090 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.286 1.286 20 C 0.078 3.922 21 C -0.175 4.175 22 C -0.209 4.209 23 C 0.122 3.878 24 O -0.323 6.323 25 C 0.041 3.959 26 C 0.043 3.957 27 O -0.321 6.321 28 C 0.039 3.961 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.262 0.738 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.050 0.950 46 H 0.046 0.954 47 H 0.050 0.950 48 H 0.090 0.910 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 -15.748 -0.175 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.064 3.936 4 C -0.220 4.220 5 C -0.088 4.088 6 C -0.113 4.113 7 C -0.090 4.090 8 C -0.163 4.163 9 C 0.275 3.725 10 O -0.414 6.414 11 N -0.152 5.152 12 C -0.475 4.475 13 H 0.093 0.907 14 C -0.137 4.137 15 N -0.466 5.466 16 Si 0.737 3.263 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.213 1.213 20 C -0.028 4.028 21 C -0.213 4.213 22 C -0.248 4.248 23 C 0.077 3.923 24 O -0.239 6.239 25 C -0.053 4.053 26 C -0.002 4.002 27 O -0.238 6.238 28 C -0.056 4.056 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.126 -15.776 0.587 19.314 hybrid contribution -0.044 0.863 -0.045 0.866 sum -11.170 -14.913 0.542 18.640 Atomic orbital electron populations 1.23072 0.78632 1.03829 1.01395 1.86138 1.21031 1.26228 1.88759 1.19177 0.91054 0.84889 0.98504 1.21149 1.00014 0.91703 1.09159 1.20850 0.93448 0.97292 0.97171 1.20366 0.93484 0.95673 1.01759 1.20170 1.00762 0.90481 0.97606 1.21533 1.00644 0.97613 0.96508 1.19792 0.81343 0.86943 0.84467 1.90510 1.56527 1.63757 1.30602 1.42794 1.52836 1.17745 1.01848 1.18857 1.19100 0.89504 1.20003 0.90692 1.25230 0.94528 0.97762 0.96151 1.69841 1.18963 1.31599 1.26198 0.86191 0.77541 0.83933 0.78597 1.19672 1.20716 1.21264 1.21682 1.02276 0.94585 0.84307 1.23061 0.95751 1.03891 0.98548 1.23313 0.92919 1.03347 1.05204 1.18606 0.84043 0.90136 0.99510 1.86017 1.14371 1.93819 1.29725 1.22993 0.97784 1.00572 0.83957 1.18276 0.86672 0.86264 1.08962 1.86043 1.70315 1.38155 1.29255 1.22963 0.99457 0.98530 0.84636 0.88322 0.92601 0.92643 0.84909 0.84746 0.90167 0.90622 0.91085 0.90462 0.92786 0.88071 0.87549 0.89908 0.89926 0.89194 0.88594 0.93135 0.93485 0.93158 0.89191 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.72 10.28 -34.33 -0.35 -4.07 16 3 C 0.11 1.46 6.70 -39.15 -0.26 1.20 16 4 C -0.20 -2.34 9.04 -39.43 -0.36 -2.70 16 5 C -0.07 -0.89 9.67 -39.59 -0.38 -1.27 16 6 C -0.11 -1.73 5.15 -104.46 -0.54 -2.27 16 7 C -0.05 -0.95 4.35 -27.88 -0.12 -1.07 16 8 C -0.12 -2.42 4.30 -27.88 -0.12 -2.54 16 9 C 0.49 12.38 6.96 -10.98 -0.08 12.30 16 10 O -0.54 -15.66 13.76 5.55 0.08 -15.59 16 11 N -0.43 -10.93 2.83 -107.73 -0.31 -11.23 16 12 C -0.35 -9.59 7.91 -14.94 -0.12 -9.70 16 13 H 0.08 2.01 7.26 -52.49 -0.38 1.63 16 14 C 0.07 2.09 4.39 -17.47 -0.08 2.01 16 15 N -0.83 -24.81 11.74 55.50 0.65 -24.16 16 16 Si 0.91 22.11 29.59 -169.99 -5.03 17.07 16 17 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.08 1.60 5.87 -67.93 -0.40 1.20 16 21 C -0.17 -3.23 9.80 -26.69 -0.26 -3.49 16 22 C -0.21 -3.64 10.36 -26.69 -0.28 -3.91 16 23 C 0.12 1.94 5.71 -39.15 -0.22 1.72 16 24 O -0.32 -5.44 9.47 -34.29 -0.32 -5.76 16 25 C 0.04 0.58 10.80 101.05 1.09 1.67 16 26 C 0.04 0.65 5.75 -39.03 -0.22 0.43 16 27 O -0.32 -4.80 9.99 -45.30 -0.45 -5.25 16 28 C 0.04 0.45 11.13 101.05 1.13 1.58 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.08 1.61 6.38 -51.93 -0.33 1.28 16 35 H 0.08 1.36 8.00 -51.93 -0.42 0.94 16 36 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 37 H 0.08 1.54 7.56 -51.93 -0.39 1.15 16 38 H 0.26 7.47 8.32 -40.82 -0.34 7.13 16 39 H 0.10 1.91 6.96 -51.93 -0.36 1.54 16 40 H 0.11 2.17 6.73 -51.93 -0.35 1.82 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 0.73 7.17 -51.93 -0.37 0.35 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -35.03 406.11 -7.36 -42.39 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.51 Total: 4.15 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.23 Total: -3.67 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.35 Total: -35.39 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -1.05 Total: -30.68 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.03 -7.36 -42.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058392255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.832 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds