Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39645 * 120.14866 * 122.36731 * 3 2 1 5 5 C 1.37925 * 119.84533 * 179.97438 * 4 3 2 6 6 C 1.38383 * 120.15197 * 359.97438 * 5 4 3 7 7 C 1.38335 * 120.30711 * 359.97438 * 6 5 4 8 8 C 1.37973 * 120.15122 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.07805 * 180.02562 * 8 7 6 10 10 O 1.42898 * 109.47173 * 359.97438 * 9 8 7 11 11 C 1.35687 * 116.99916 * 179.97438 * 10 9 8 12 12 C 1.39197 * 119.87572 * 359.73118 * 11 10 9 13 13 C 1.36588 * 120.13448 * 179.75615 * 12 11 10 14 14 C 1.40264 * 119.86247 * 0.51410 * 13 12 11 15 15 C 1.46743 * 120.12303 * 179.76018 * 14 13 12 16 16 N 1.30694 * 120.00111 * 359.97438 * 15 14 13 17 17 N 1.40107 * 120.00344 * 180.02562 * 16 15 14 18 18 C 1.34772 * 120.00064 * 179.97438 * 17 16 15 19 19 O 1.21981 * 120.00217 * 359.97438 * 18 17 16 20 20 C 1.40683 * 119.99720 * 179.97438 * 18 17 16 21 21 H 1.07999 * 120.00130 * 359.97438 * 20 18 17 22 22 C 1.40207 * 119.99932 * 179.97438 * 20 18 17 23 23 N 1.30608 * 119.99981 * 0.02562 * 22 20 18 24 24 Si 1.86796 * 120.00101 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47067 * 89.99981 * 24 22 20 26 26 H 1.48499 * 109.47382 * 210.00441 * 24 22 20 27 27 H 1.48497 * 109.47304 * 330.00420 * 24 22 20 28 28 C 1.40255 * 119.75137 * 359.74254 * 14 13 12 29 29 C 1.36590 * 119.87154 * 359.97438 * 28 14 13 30 30 H 1.07998 * 120.07792 * 359.95142 * 4 3 2 31 31 H 1.08007 * 119.92284 * 179.72249 * 5 4 3 32 32 H 1.08001 * 119.84650 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.93052 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.46939 * 119.98281 * 9 8 7 35 35 H 1.09005 * 109.46977 * 239.97882 * 9 8 7 36 36 H 1.08012 * 119.93467 * 0.02562 * 12 11 10 37 37 H 1.08000 * 120.07178 * 180.27666 * 13 12 11 38 38 H 1.07999 * 120.00019 * 179.97438 * 15 14 13 39 39 H 0.97003 * 119.99315 * 359.97438 * 17 16 15 40 40 H 0.96993 * 120.00042 * 179.97438 * 23 22 20 41 41 H 1.08004 * 120.06310 * 180.02562 * 28 14 13 42 42 H 1.08000 * 119.93843 * 180.02562 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.6474 -1.0199 5 6 4.6483 0.6446 -1.0135 6 6 5.3373 0.0032 0.0009 7 6 4.6492 -0.6385 1.0149 8 6 3.2695 -0.6435 1.0209 9 6 2.5215 -1.3427 2.1267 10 8 3.4547 -1.9205 3.0417 11 6 2.9414 -2.5912 4.1037 12 6 1.5618 -2.6853 4.2632 13 6 1.0393 -3.3634 5.3276 14 6 1.8960 -3.9564 6.2666 15 6 1.3409 -4.6817 7.4151 16 7 0.0460 -4.7758 7.5647 17 7 -0.4842 -5.4679 8.6615 18 6 -1.8195 -5.5644 8.8160 19 8 -2.5666 -5.0488 8.0013 20 6 -2.3517 -6.2598 9.9171 21 1 -1.6902 -6.7167 10.6383 22 6 -3.7409 -6.3598 10.0782 23 7 -4.5409 -5.8077 9.2058 24 14 -4.4476 -7.2838 11.5397 25 1 -4.6332 -6.3455 12.6758 26 1 -5.7580 -7.8738 11.1658 27 1 -3.5133 -8.3665 11.9397 28 6 3.2853 -3.8537 6.1036 29 6 3.7964 -3.1780 5.0322 30 1 2.7326 1.1483 -1.8121 31 1 5.1918 1.1406 -1.8041 32 1 6.4173 0.0037 0.0008 33 1 5.1931 -1.1375 1.8033 34 1 1.8947 -0.6228 2.6529 35 1 1.8955 -2.1275 1.7021 36 1 0.9031 -2.2249 3.5416 37 1 -0.0312 -3.4396 5.4480 38 1 2.0024 -5.1379 8.1367 39 1 0.1100 -5.8776 9.3096 40 1 -5.5019 -5.8772 9.3170 41 1 3.9496 -4.3087 6.8234 42 1 4.8660 -3.0986 4.9054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059140152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = 50.732570 kcal Electronic energy + Delta-G solvation = -26908.289457 eV Core-core repulsion = 22819.973859 eV Total energy + Delta-G solvation = -4088.315599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.121 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.63327 -39.71191 -37.91416 -37.36138 -36.80937 -35.05964 -32.95198 -32.62486 -31.83407 -31.33009 -31.12652 -28.93894 -27.23438 -26.38511 -24.31201 -23.40404 -22.98381 -21.68159 -20.60155 -19.68272 -19.28701 -18.27868 -17.59989 -16.96368 -16.34544 -16.17993 -15.86178 -15.62316 -15.33766 -15.07852 -14.86219 -14.46554 -14.27104 -13.95040 -13.77736 -13.53786 -13.38895 -13.34866 -13.21032 -13.05268 -12.79410 -12.67013 -12.58124 -11.86833 -11.81123 -11.74420 -11.62832 -11.41121 -11.20524 -10.79212 -10.69282 -10.66202 -10.38611 -9.50688 -9.49252 -9.33679 -9.05359 -9.02839 -8.46964 -7.77994 -7.15780 -6.41020 -4.96560 0.22838 0.75418 1.10166 1.49941 2.25411 2.51885 2.78455 2.84292 3.05102 3.10042 3.14206 3.34285 3.39707 3.71313 4.03355 4.07090 4.08620 4.36498 4.43910 4.45817 4.70039 4.78749 4.83360 4.87699 4.92108 4.96325 5.13786 5.16538 5.34320 5.42026 5.44399 5.66853 5.70609 5.75069 5.83126 5.87452 5.90155 6.09743 6.25677 6.31043 6.41045 6.62709 6.73452 6.86951 7.06008 7.19557 7.28305 7.82293 7.97466 8.66695 8.75120 9.28394 10.37997 10.63206 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.019826 B = 0.001599 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.932468 B =17509.833580 C =18906.619524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.243 3.757 3 C -0.023 4.023 4 C -0.068 4.068 5 C -0.121 4.121 6 C -0.088 4.088 7 C -0.098 4.098 8 C -0.039 4.039 9 C 0.093 3.907 10 O -0.310 6.310 11 C 0.119 3.881 12 C -0.205 4.205 13 C -0.051 4.051 14 C -0.052 4.052 15 C 0.018 3.982 16 N -0.190 5.190 17 N -0.588 5.588 18 C 0.557 3.443 19 O -0.554 6.554 20 C -0.537 4.537 21 H 0.071 0.929 22 C 0.088 3.912 23 N -0.744 5.744 24 Si 0.917 3.083 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.262 1.262 28 C -0.070 4.070 29 C -0.148 4.148 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.106 0.894 39 H 0.369 0.631 40 H 0.274 0.726 41 H 0.132 0.868 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.714 10.549 -16.717 30.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.073 4.073 3 C -0.026 4.026 4 C -0.089 4.089 5 C -0.139 4.139 6 C -0.107 4.107 7 C -0.116 4.116 8 C -0.042 4.042 9 C 0.018 3.982 10 O -0.224 6.224 11 C 0.073 3.927 12 C -0.224 4.224 13 C -0.071 4.071 14 C -0.055 4.055 15 C -0.191 4.191 16 N 0.000 5.000 17 N -0.334 5.334 18 C 0.366 3.634 19 O -0.433 6.433 20 C -0.573 4.573 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.371 5.371 24 Si 0.741 3.259 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.186 1.186 28 C -0.090 4.090 29 C -0.167 4.167 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.163 0.837 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.124 0.876 39 H 0.204 0.796 40 H 0.086 0.914 41 H 0.150 0.850 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 20.349 11.131 -17.646 29.144 hybrid contribution 0.843 -0.937 1.494 1.954 sum 21.192 10.195 -16.152 28.530 Atomic orbital electron populations 1.81343 1.11834 1.07547 1.06934 1.25708 0.92682 0.94415 0.94449 1.15665 0.84293 1.04450 0.98186 1.21135 0.94482 0.96771 0.96494 1.21163 0.93556 0.99940 0.99267 1.21480 1.00752 0.95153 0.93328 1.21036 0.92701 0.98717 0.99117 1.19610 0.94468 0.96457 0.93648 1.21498 0.90914 0.97212 0.88605 1.85871 1.35058 1.67241 1.34194 1.19150 0.92012 0.93854 0.87654 1.20968 0.93493 1.06119 1.01796 1.21148 1.01154 0.93134 0.91709 1.18504 0.92517 0.99766 0.94664 1.23890 0.91895 1.04329 0.98961 1.74805 1.13171 1.05267 1.06718 1.48083 1.09319 1.54382 1.21621 1.16805 0.77155 0.82003 0.87463 1.90726 1.55910 1.50690 1.46004 1.19750 0.92368 1.35847 1.09365 0.91065 1.25775 0.96793 0.94198 0.96830 1.70013 1.04306 1.31579 1.31227 0.86207 0.78715 0.79979 0.80977 1.19408 1.20119 1.18630 1.20784 0.93809 0.97573 0.96862 1.19952 0.99312 1.02472 0.94931 0.84670 0.84762 0.84897 0.83727 0.90012 0.90015 0.85766 0.84262 0.87624 0.79559 0.91448 0.85009 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.95 18.54 41.84 0.78 -4.18 16 2 C 0.24 2.33 14.39 -22.47 -0.32 2.00 16 3 C -0.02 -0.16 5.73 -106.93 -0.61 -0.77 16 4 C -0.07 -0.34 9.76 -39.17 -0.38 -0.72 16 5 C -0.12 -0.45 10.03 -39.64 -0.40 -0.85 16 6 C -0.09 -0.37 10.04 -39.49 -0.40 -0.76 16 7 C -0.10 -0.59 9.37 -39.64 -0.37 -0.96 16 8 C -0.04 -0.29 5.91 -104.21 -0.62 -0.91 16 9 C 0.09 0.82 4.13 36.00 0.15 0.97 16 10 O -0.31 -3.14 8.61 -18.76 -0.16 -3.30 16 11 C 0.12 1.42 6.71 -38.87 -0.26 1.16 16 12 C -0.21 -2.74 8.97 -39.82 -0.36 -3.10 16 13 C -0.05 -0.82 9.54 -39.42 -0.38 -1.19 16 14 C -0.05 -0.79 5.88 -104.94 -0.62 -1.41 16 15 C 0.02 0.31 10.75 -14.60 -0.16 0.16 16 16 N -0.19 -4.28 10.19 32.13 0.33 -3.95 16 17 N -0.59 -14.16 6.26 28.92 0.18 -13.98 16 18 C 0.56 16.33 7.65 -15.34 -0.12 16.21 16 19 O -0.55 -18.65 15.20 4.94 0.08 -18.57 16 20 C -0.54 -14.92 9.26 -37.92 -0.35 -15.27 16 21 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 22 C 0.09 2.39 5.50 -17.33 -0.10 2.29 16 23 N -0.74 -21.92 11.71 55.56 0.65 -21.27 16 24 Si 0.92 19.42 29.56 -169.99 -5.02 14.40 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 28 C -0.07 -0.82 9.76 -39.42 -0.38 -1.20 16 29 C -0.15 -1.62 9.93 -39.82 -0.40 -2.01 16 30 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 31 H 0.13 0.18 8.06 -52.48 -0.42 -0.24 16 32 H 0.13 0.26 8.06 -52.49 -0.42 -0.17 16 33 H 0.15 0.84 7.00 -52.49 -0.37 0.48 16 34 H 0.08 0.73 7.64 -51.93 -0.40 0.34 16 35 H 0.08 0.73 7.66 -51.93 -0.40 0.33 16 36 H 0.12 1.49 6.27 -52.48 -0.33 1.16 16 37 H 0.14 2.56 7.55 -52.49 -0.40 2.16 16 38 H 0.11 1.50 8.03 -52.49 -0.42 1.07 16 39 H 0.37 7.43 8.62 -182.59 -1.57 5.86 16 40 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 41 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -37.16 383.87 -9.00 -46.16 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.54 Total: 5.28 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -6.06 Total: -6.37 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 1.93 Total: -43.38 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.09 Total: -21.87 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.16 -9.00 -46.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059140152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.889 kcal (2) G-P(sol) polarization free energy of solvation -37.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds