Wall clock time and date at job start Tue Mar 31 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30218 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48503 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46844 * 299.99794 * 3 2 1 6 6 H 1.48500 * 109.46909 * 60.00055 * 3 2 1 7 7 C 1.40895 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.46159 * 120.00070 * 359.97438 * 7 2 1 10 10 O 1.21878 * 120.00379 * 359.97438 * 9 7 2 11 11 N 1.34784 * 120.00105 * 180.02562 * 9 7 2 12 12 N 1.28995 * 120.00139 * 180.02562 * 11 9 7 13 13 C 1.31906 * 119.99921 * 180.02562 * 12 11 9 14 14 C 1.41363 * 119.99647 * 179.97438 * 13 12 11 15 15 C 1.41047 * 120.12756 * 0.31144 * 14 13 12 16 16 C 1.36100 * 119.86730 * 180.22968 * 15 14 13 17 17 C 1.39989 * 120.12816 * 359.47382 * 16 15 14 18 18 N 1.38095 * 119.87607 * 180.27658 * 17 16 15 19 19 C 1.47014 * 110.99731 * 63.63497 * 18 17 16 20 20 C 1.53104 * 109.25918 * 177.60898 * 19 18 17 21 21 O 1.43011 * 109.25759 * 56.84994 * 20 19 18 22 22 C 1.43023 * 113.74029 * 301.33450 * 21 20 19 23 23 C 1.47016 * 110.99811 * 300.00437 * 18 17 16 24 24 C 1.39956 * 120.25322 * 0.26015 * 17 16 15 25 25 N 1.48020 * 119.92865 * 180.02562 * 24 17 16 26 26 O 1.31705 * 119.99567 * 179.97438 * 25 24 17 27 27 O 1.31692 * 120.00372 * 359.97438 * 25 24 17 28 28 C 1.36125 * 120.13057 * 359.97438 * 24 17 16 29 29 H 0.96995 * 119.99600 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99799 * 359.97438 * 11 9 7 31 31 H 1.07997 * 120.00138 * 359.97438 * 13 12 11 32 32 H 1.08004 * 120.07088 * 359.97438 * 15 14 13 33 33 H 1.08002 * 119.93957 * 179.75770 * 16 15 14 34 34 H 1.08998 * 109.50981 * 297.54448 * 19 18 17 35 35 H 1.09001 * 109.50570 * 57.68001 * 19 18 17 36 36 H 1.09002 * 109.50656 * 296.91476 * 20 19 18 37 37 H 1.08996 * 109.50766 * 176.78714 * 20 19 18 38 38 H 1.09003 * 109.50085 * 298.73357 * 22 21 20 39 39 H 1.08998 * 109.54495 * 178.62845 * 22 21 20 40 40 H 1.08998 * 109.50751 * 302.32225 * 23 18 17 41 41 H 1.08998 * 109.50659 * 62.45971 * 23 18 17 42 42 H 1.08004 * 120.06460 * 180.02562 * 28 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3022 0.0000 0.0000 3 14 2.2362 1.6177 0.0000 4 1 3.6962 1.3463 -0.0006 5 1 1.8775 2.3963 -1.2125 6 1 1.8775 2.3964 1.2125 7 6 2.0066 -1.2202 0.0005 8 1 3.0867 -1.2202 0.0001 9 6 1.2758 -2.4860 0.0017 10 8 0.0570 -2.4860 0.0026 11 7 1.9497 -3.6533 0.0027 12 7 1.3047 -4.7704 0.0032 13 6 1.9642 -5.9127 0.0048 14 6 1.2573 -7.1369 0.0058 15 6 -0.1532 -7.1400 -0.0013 16 6 -0.8284 -8.3217 0.0045 17 6 -0.1258 -9.5324 0.0065 18 7 -0.8162 -10.7284 0.0066 19 6 -1.6058 -10.8810 -1.2241 20 6 -2.3059 -12.2425 -1.2094 21 8 -3.1120 -12.3457 -0.0326 22 6 -2.3749 -12.2024 1.1847 23 6 -1.6755 -10.8405 1.1942 24 6 1.2738 -9.5355 0.0079 25 7 2.0095 -10.8200 0.0094 26 8 3.3265 -10.8244 0.0103 27 8 1.3472 -11.9582 0.0099 28 6 1.9597 -8.3597 0.0070 29 1 -0.4849 0.8400 0.0004 30 1 2.9196 -3.6533 0.0023 31 1 3.0442 -5.9128 0.0052 32 1 -0.6963 -6.2065 -0.0073 33 1 -1.9084 -8.3253 0.0030 34 1 -2.3522 -10.0885 -1.2782 35 1 -0.9461 -10.8203 -2.0896 36 1 -1.5586 -13.0360 -1.2094 37 1 -2.9375 -12.3366 -2.0926 38 1 -1.6296 -12.9948 1.2542 39 1 -3.0559 -12.2678 2.0332 40 1 -1.0668 -10.7502 2.0938 41 1 -2.4231 -10.0474 1.1786 42 1 3.0397 -8.3633 0.0077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059377964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:40 Heat of formation + Delta-G solvation = 34.599410 kcal Electronic energy + Delta-G solvation = -29588.112688 eV Core-core repulsion = 25153.674150 eV Total energy + Delta-G solvation = -4434.438537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.131 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.08902 -39.49650 -39.08349 -38.10399 -36.49598 -35.61487 -34.12499 -33.03410 -32.39983 -31.78845 -31.53254 -29.63184 -27.66260 -26.81201 -25.73346 -24.36906 -23.66787 -22.91750 -21.32846 -20.56282 -20.30329 -18.80880 -17.97759 -17.79759 -17.25203 -16.80023 -16.49421 -15.91582 -15.91349 -15.58207 -15.30699 -15.28189 -15.16516 -14.88537 -14.50079 -14.37756 -14.08896 -13.73757 -13.18839 -13.04493 -12.70315 -12.59276 -11.99527 -11.98489 -11.70905 -11.67640 -11.62773 -11.19910 -11.14533 -11.03261 -11.02291 -10.87109 -10.56615 -10.47530 -10.04435 -9.96096 -9.75204 -9.57002 -9.24591 -8.85357 -8.26846 -7.41725 -6.71663 -5.19392 -0.55803 0.43122 1.21235 1.25194 2.31550 2.88329 2.95617 3.00983 3.15161 3.46058 3.55213 3.57272 3.90864 4.16262 4.27440 4.51612 4.54500 4.64396 4.74779 4.78791 4.81752 4.87272 4.90038 5.03660 5.19012 5.23067 5.26532 5.31831 5.41080 5.46493 5.52476 5.62560 5.65189 5.77583 5.92453 6.12707 6.28702 6.31532 6.37685 6.80028 6.82688 6.94837 6.96808 7.20140 7.68853 8.36885 8.46597 8.80649 10.03227 10.20189 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.002064 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.803898 B =13564.943319 C =14712.020942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.085 3.915 3 Si 0.921 3.079 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.080 0.920 9 C 0.534 3.466 10 O -0.531 6.531 11 N -0.507 5.507 12 N -0.148 5.148 13 C -0.074 4.074 14 C 0.023 3.977 15 C -0.049 4.049 16 C -0.140 4.140 17 C 0.129 3.871 18 N -0.490 5.490 19 C 0.025 3.975 20 C 0.066 3.934 21 O -0.385 6.385 22 C 0.066 3.934 23 C 0.024 3.976 24 C 0.028 3.972 25 N -0.016 5.016 26 O -0.217 6.217 27 O -0.114 6.114 28 C -0.066 4.066 29 H 0.279 0.721 30 H 0.371 0.629 31 H 0.115 0.885 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 -17.585 -0.029 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.564 4.564 8 H 0.098 0.902 9 C 0.342 3.658 10 O -0.408 6.408 11 N -0.252 5.252 12 N 0.026 4.974 13 C -0.271 4.271 14 C 0.020 3.980 15 C -0.071 4.071 16 C -0.160 4.160 17 C 0.030 3.970 18 N -0.212 5.212 19 C -0.101 4.101 20 C -0.011 4.011 21 O -0.303 6.303 22 C -0.011 4.011 23 C -0.102 4.102 24 C -0.059 4.059 25 N 0.465 4.535 26 O -0.397 6.397 27 O -0.323 6.323 28 C -0.089 4.089 29 H 0.090 0.910 30 H 0.209 0.791 31 H 0.132 0.868 32 H 0.172 0.828 33 H 0.159 0.841 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.340 -16.588 -0.021 16.921 hybrid contribution 1.874 0.980 -0.012 2.114 sum -1.467 -15.608 -0.033 15.677 Atomic orbital electron populations 1.69767 1.07599 1.28757 1.31144 1.25896 0.94796 1.00875 0.92349 0.86073 0.80434 0.80298 0.78751 1.18323 1.19626 1.19619 1.21006 0.94068 0.87932 1.53393 0.90195 1.18773 0.87857 0.80337 0.78793 1.90722 1.13314 1.84916 1.51810 1.45742 1.08992 1.03635 1.66824 1.71572 1.31715 0.93621 1.00450 1.22334 0.96806 0.89653 1.18297 1.17519 0.92511 0.90876 0.97141 1.21728 0.93594 0.99305 0.92435 1.21485 1.01033 0.91472 1.02027 1.18554 0.89855 0.90072 0.98490 1.59341 1.28502 1.30011 1.03354 1.22887 0.96289 0.98988 0.91918 1.22664 0.94643 0.95483 0.88285 1.87986 1.35033 1.93237 1.14093 1.22662 0.95724 0.95393 0.87299 1.22901 0.95419 0.99031 0.92883 1.19850 0.89869 0.81774 1.14402 1.50310 1.02741 1.04141 0.96288 1.96269 0.88967 1.96209 1.58286 1.96268 1.68245 1.16353 1.51480 1.20879 1.01826 0.88943 0.97281 0.90983 0.79128 0.86814 0.82752 0.84058 0.93018 0.89465 0.91400 0.88190 0.91449 0.88184 0.89416 0.92992 0.82584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.08 11.83 55.60 0.66 -19.42 16 2 C 0.08 2.10 5.52 -17.23 -0.10 2.00 16 3 Si 0.92 17.75 29.57 -169.99 -5.03 12.72 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.53 -13.13 9.57 -35.40 -0.34 -13.47 16 8 H 0.08 1.76 7.86 -52.48 -0.41 1.35 16 9 C 0.53 13.79 7.82 -13.08 -0.10 13.69 16 10 O -0.53 -15.92 15.35 5.03 0.08 -15.85 16 11 N -0.51 -10.42 5.88 30.16 0.18 -10.24 16 12 N -0.15 -2.86 9.56 31.12 0.30 -2.56 16 13 C -0.07 -1.11 10.39 -16.33 -0.17 -1.28 16 14 C 0.02 0.30 5.76 -106.59 -0.61 -0.31 16 15 C -0.05 -0.64 9.50 -39.29 -0.37 -1.01 16 16 C -0.14 -1.55 8.51 -39.69 -0.34 -1.88 16 17 C 0.13 1.51 4.72 -83.74 -0.40 1.12 16 18 N -0.49 -5.22 2.44 -170.62 -0.42 -5.63 16 19 C 0.03 0.23 5.39 -3.71 -0.02 0.21 16 20 C 0.07 0.55 7.01 37.21 0.26 0.81 16 21 O -0.39 -3.76 10.83 -35.23 -0.38 -4.15 16 22 C 0.07 0.55 7.01 37.21 0.26 0.81 16 23 C 0.02 0.22 5.35 -3.71 -0.02 0.20 16 24 C 0.03 0.37 6.87 -80.06 -0.55 -0.18 16 25 N -0.02 -0.24 4.98 33.91 0.17 -0.07 16 26 O -0.22 -3.49 19.12 -31.57 -0.60 -4.09 16 27 O -0.11 -1.72 17.75 -31.56 -0.56 -2.28 16 28 C -0.07 -0.82 9.27 -39.29 -0.36 -1.19 16 29 H 0.28 6.70 8.28 -40.82 -0.34 6.36 16 30 H 0.37 6.23 8.43 -190.13 -1.60 4.63 16 31 H 0.11 1.40 7.95 -52.49 -0.42 0.98 16 32 H 0.15 2.24 7.47 -52.48 -0.39 1.85 16 33 H 0.14 1.31 6.99 -52.49 -0.37 0.95 16 34 H 0.05 0.46 7.36 -51.93 -0.38 0.07 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.80 8.13 -51.93 -0.42 0.37 16 41 H 0.05 0.45 7.17 -51.93 -0.37 0.08 16 42 H 0.16 1.75 7.54 -52.48 -0.40 1.35 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -32.33 369.18 -8.91 -41.24 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.01 Total: 5.23 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.86 Total: -0.48 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.89 Total: -37.92 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.47 Total: -26.36 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.33 -8.91 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059377964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.839 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds