Wall clock time and date at job start Tue Mar 31 2020 05:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48504 * 109.46716 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47212 * 119.99256 * 3 2 1 6 6 H 1.48493 * 109.47176 * 240.00030 * 3 2 1 7 7 C 1.38980 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99963 * 186.52062 * 7 2 1 9 9 N 1.36945 * 119.99899 * 6.52107 * 7 2 1 10 10 C 1.34773 * 120.00105 * 45.69985 * 9 7 2 11 11 O 1.21666 * 119.99877 * 5.14815 * 10 9 7 12 12 C 1.47218 * 119.99950 * 185.14710 * 10 9 7 13 13 C 1.36306 * 122.56474 * 183.10675 * 12 10 9 14 14 S 1.71005 * 109.00750 * 179.89835 * 13 12 10 15 15 C 1.75968 * 90.64299 * 0.30276 * 14 13 12 16 16 C 1.47908 * 125.21865 * 179.81740 * 15 14 13 17 17 C 1.39552 * 120.13451 * 0.02562 * 16 15 14 18 18 C 1.37952 * 119.88245 * 180.02562 * 17 16 15 19 19 C 1.38351 * 120.15994 * 359.97438 * 18 17 16 20 20 C 1.38437 * 120.26714 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 119.94449 * 180.02562 * 20 19 18 22 22 C 1.38120 * 120.11388 * 359.76155 * 20 19 18 23 23 N 1.29782 * 109.56021 * 359.82060 * 15 14 13 24 24 C 1.46506 * 119.99678 * 225.69840 * 9 7 2 25 25 C 1.52995 * 117.49927 * 2.13480 * 24 9 7 26 26 C 1.52994 * 117.50227 * 293.47274 * 24 9 7 27 27 H 0.96996 * 119.99994 * 355.00005 * 1 2 3 28 28 H 1.08006 * 125.49973 * 0.02562 * 13 12 10 29 29 H 1.07997 * 120.06050 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.91988 * 180.02562 * 18 17 16 31 31 H 1.07996 * 119.86856 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.07706 * 180.25805 * 22 20 19 33 33 H 1.09001 * 115.54748 * 147.80136 * 24 9 7 34 34 H 1.08999 * 117.50086 * 359.97438 * 25 24 9 35 35 H 1.09001 * 117.49692 * 145.02225 * 25 24 9 36 36 H 1.09001 * 117.50420 * 214.98376 * 26 24 9 37 37 H 1.09006 * 117.49693 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1017 1.6965 1.2125 6 1 3.1019 1.6964 -1.2124 7 6 2.0090 -1.2036 0.0005 8 1 3.0837 -1.2066 0.1067 9 7 1.3309 -2.3858 -0.1336 10 6 0.3757 -2.5116 -1.0761 11 8 0.1801 -1.6091 -1.8682 12 6 -0.4309 -3.7411 -1.1470 13 6 -1.3671 -3.9494 -2.1156 14 16 -2.0895 -5.4801 -1.8718 15 6 -1.0821 -5.7519 -0.4548 16 6 -1.1148 -6.9616 0.3957 17 6 -1.9944 -8.0034 0.0984 18 6 -2.0209 -9.1291 0.8955 19 6 -1.1775 -9.2274 1.9877 20 6 -0.3016 -8.1982 2.2878 21 17 0.7535 -8.3307 3.6600 22 6 -0.2619 -7.0685 1.4942 23 7 -0.3062 -4.7281 -0.2704 24 6 1.6439 -3.5138 0.7473 25 6 2.7027 -3.2925 1.8293 26 6 3.0250 -4.1570 0.6080 27 1 -0.4850 0.8368 0.0732 28 1 -1.6117 -3.2600 -2.9102 29 1 -2.6533 -7.9286 -0.7540 30 1 -2.7011 -9.9359 0.6657 31 1 -1.2018 -10.1110 2.6082 32 1 0.4246 -6.2677 1.7265 33 1 0.8062 -4.1678 0.9893 34 1 3.1668 -2.3078 1.8855 35 1 2.5618 -3.8013 2.7829 36 1 3.0961 -5.2343 0.7585 37 1 3.7008 -3.7413 -0.1395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060166934.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:41 Heat of formation + Delta-G solvation = 85.173405 kcal Electronic energy + Delta-G solvation = -25285.632635 eV Core-core repulsion = 21568.723341 eV Total energy + Delta-G solvation = -3716.909294 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.044 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.02581 -39.18413 -37.62980 -36.60558 -35.89800 -32.88543 -32.31859 -31.03862 -30.83047 -29.07019 -26.33940 -24.71237 -23.17292 -22.73879 -21.57495 -21.24674 -20.14933 -19.03539 -18.33232 -17.18180 -16.12936 -15.92380 -15.79915 -15.43264 -14.88837 -14.69257 -14.47238 -14.14253 -13.76045 -13.71888 -13.56608 -13.14229 -12.76809 -12.65915 -12.05089 -12.01931 -11.76483 -11.71651 -11.50612 -11.07575 -11.01716 -10.96246 -10.82231 -10.61770 -10.27730 -9.97446 -9.86863 -9.76271 -9.18341 -9.02841 -8.86838 -8.73583 -8.19326 -8.04100 -6.97921 -6.12651 -3.92064 0.25956 0.95923 1.38429 1.40309 1.88689 1.98447 2.72028 3.29318 3.34337 3.35553 3.50453 3.93044 4.24506 4.54681 4.59128 4.73965 4.81296 4.90649 4.99695 5.09314 5.25049 5.32237 5.36372 5.63089 5.69576 5.73482 5.91797 5.97266 5.98271 6.00316 6.09512 6.22179 6.37239 6.41257 6.46574 6.65810 7.00303 7.25037 7.56069 7.82313 8.25191 9.02343 9.13516 9.59491 10.27061 10.94425 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.003824 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.971564 B = 7320.436684 C = 9084.786804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.059 3.941 3 Si 0.919 3.081 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.330 4.330 8 H 0.081 0.919 9 N -0.407 5.407 10 C 0.539 3.461 11 O -0.525 6.525 12 C 0.056 3.944 13 C -0.228 4.228 14 S 0.138 5.862 15 C 0.065 3.935 16 C 0.005 3.995 17 C -0.100 4.100 18 C -0.104 4.104 19 C -0.105 4.105 20 C -0.033 4.033 21 Cl -0.065 7.065 22 C -0.070 4.070 23 N -0.414 5.414 24 C 0.066 3.934 25 C -0.184 4.184 26 C -0.207 4.207 27 H 0.266 0.734 28 H 0.186 0.814 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 -19.634 2.751 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.151 4.151 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.458 4.458 8 H 0.098 0.902 9 N -0.125 5.125 10 C 0.324 3.676 11 O -0.402 6.402 12 C -0.080 4.080 13 C -0.370 4.370 14 S 0.395 5.605 15 C -0.210 4.210 16 C 0.001 3.999 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.060 4.060 21 Cl -0.036 7.036 22 C -0.092 4.092 23 N -0.129 5.129 24 C -0.040 4.040 25 C -0.221 4.221 26 C -0.246 4.246 27 H 0.076 0.924 28 H 0.203 0.797 29 H 0.149 0.851 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.615 -19.494 2.237 20.410 hybrid contribution 1.013 1.725 0.240 2.015 sum -4.602 -17.769 2.477 18.522 Atomic orbital electron populations 1.69854 1.06341 1.27593 1.42358 1.25384 0.95129 0.99496 0.95090 0.86160 0.79115 0.81517 0.78628 1.21012 1.20105 1.19891 1.18977 0.91253 0.82222 1.53300 0.90180 1.42551 1.33622 1.09975 1.26364 1.16686 0.83791 0.83921 0.83200 1.90640 1.68863 1.39445 1.41278 1.21364 0.98782 0.96188 0.91664 1.26648 1.02335 1.01496 1.06475 1.83273 1.39329 1.12288 1.25611 1.25919 0.98846 0.97533 0.98688 1.17700 0.97258 0.90861 0.94124 1.21253 0.97956 0.92901 0.99957 1.20953 0.98989 0.97899 0.94410 1.21163 0.95179 0.98099 0.97999 1.20816 0.96390 0.96653 0.92143 1.98387 1.64985 1.98002 1.42225 1.21228 0.98292 0.96998 0.92636 1.67114 1.20728 1.00038 1.25061 1.22885 0.92748 0.93022 0.95344 1.23105 1.05125 1.01474 0.92444 1.23207 1.02409 0.97528 1.01452 0.92411 0.79664 0.85067 0.84479 0.84697 0.83444 0.83018 0.87972 0.89947 0.90048 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.79 11.20 55.50 0.62 -24.17 16 2 C 0.06 1.68 4.76 -17.46 -0.08 1.60 16 3 Si 0.92 21.81 29.56 -169.99 -5.03 16.78 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.33 -9.20 7.91 -14.99 -0.12 -9.32 16 8 H 0.08 2.15 7.22 -52.49 -0.38 1.77 16 9 N -0.41 -10.75 2.85 -109.01 -0.31 -11.06 16 10 C 0.54 14.55 6.74 -12.61 -0.09 14.46 16 11 O -0.52 -15.90 14.43 5.22 0.08 -15.82 16 12 C 0.06 1.22 6.54 -84.59 -0.55 0.66 16 13 C -0.23 -4.20 10.63 30.04 0.32 -3.88 16 14 S 0.14 1.86 22.11 -107.50 -2.38 -0.52 16 15 C 0.06 1.00 7.31 -14.46 -0.11 0.89 16 16 C 0.00 0.06 5.87 -104.98 -0.62 -0.56 16 17 C -0.10 -0.96 9.60 -39.20 -0.38 -1.34 16 18 C -0.10 -0.81 10.03 -39.64 -0.40 -1.21 16 19 C -0.10 -0.90 9.82 -39.47 -0.39 -1.28 16 20 C -0.03 -0.36 6.31 -39.55 -0.25 -0.61 16 21 Cl -0.06 -0.69 28.95 -51.86 -1.50 -2.19 16 22 C -0.07 -0.89 9.46 -39.16 -0.37 -1.26 16 23 N -0.41 -7.92 6.11 -7.90 -0.05 -7.97 16 24 C 0.07 1.45 5.52 -67.93 -0.37 1.07 16 25 C -0.18 -3.59 9.80 -26.70 -0.26 -3.85 16 26 C -0.21 -3.94 10.38 -26.70 -0.28 -4.21 16 27 H 0.27 7.58 8.32 -40.82 -0.34 7.25 16 28 H 0.19 3.34 8.02 -52.48 -0.42 2.92 16 29 H 0.13 1.02 7.28 -52.49 -0.38 0.64 16 30 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 31 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.15 2.06 7.27 -52.48 -0.38 1.68 16 33 H 0.15 3.20 4.37 -54.93 -0.24 2.96 16 34 H 0.10 2.15 6.72 -51.93 -0.35 1.80 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -33.28 346.94 -10.68 -43.96 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -3.40 Total: 4.59 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -3.94 Total: -8.83 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.26 Total: -43.20 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.08 Total: -15.82 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.38 Total: -0.52 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.28 -10.68 -43.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060166934.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.130 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds