Wall clock time and date at job start Tue Mar 31 2020 05:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46917 * 286.62889 * 3 2 1 5 5 C 1.37091 * 120.00231 * 96.17512 * 4 3 2 6 6 H 1.08007 * 120.00268 * 162.27877 * 5 4 3 7 7 C 1.38951 * 120.00116 * 342.27143 * 5 4 3 8 8 N 1.31412 * 119.99998 * 339.22047 * 7 5 4 9 9 Si 1.86793 * 120.00092 * 159.21351 * 7 5 4 10 10 H 1.48508 * 109.47377 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47566 * 300.00631 * 9 7 5 12 12 H 1.48503 * 109.47170 * 60.00345 * 9 7 5 13 13 C 1.34784 * 119.99958 * 276.16922 * 4 3 2 14 14 O 1.21291 * 120.00207 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99744 * 0.02562 * 13 4 3 16 16 H 1.09002 * 115.54985 * 325.72259 * 15 13 4 17 17 C 1.53001 * 117.49556 * 111.39036 * 15 13 4 18 18 C 1.52997 * 117.49946 * 180.02562 * 15 13 4 19 19 H 1.09000 * 117.50227 * 145.02021 * 18 15 13 20 20 C 1.50703 * 117.49540 * 0.02562 * 18 15 13 21 21 C 1.38262 * 119.99579 * 299.72248 * 20 18 15 22 22 C 1.38218 * 120.02050 * 179.72861 * 21 20 18 23 23 C 1.38244 * 120.00981 * 0.54730 * 22 21 20 24 24 C 1.38301 * 119.98840 * 359.72905 * 23 22 21 25 25 Br 1.89101 * 120.01230 * 179.97438 * 24 23 22 26 26 C 1.38196 * 119.99657 * 120.00297 * 20 18 15 27 27 H 1.08999 * 109.47090 * 166.62999 * 3 2 1 28 28 H 1.09002 * 109.47363 * 46.62474 * 3 2 1 29 29 H 0.96993 * 120.00184 * 179.97438 * 8 7 5 30 30 H 1.09007 * 117.49667 * 214.97405 * 17 15 13 31 31 H 1.08996 * 117.50199 * 359.97438 * 17 15 13 32 32 H 1.08003 * 119.99014 * 359.97438 * 21 20 18 33 33 H 1.08007 * 119.99925 * 180.27794 * 22 21 20 34 34 H 1.07997 * 120.00578 * 179.70403 * 23 22 21 35 35 H 1.08007 * 120.00302 * 0.02562 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3944 1.3235 5 6 3.4459 -1.6980 1.5642 6 1 4.0623 -1.9433 2.4165 7 6 3.0070 -2.7037 0.7118 8 7 1.9610 -2.5027 -0.0578 9 14 3.9039 -4.3414 0.6597 10 1 3.2432 -5.2367 -0.3238 11 1 5.3158 -4.1200 0.2564 12 1 3.8662 -4.9694 2.0049 13 6 3.2024 0.5238 2.3045 14 8 3.6064 0.1967 3.4003 15 6 2.8178 1.9567 2.0400 16 1 3.0234 2.3205 1.0332 17 6 1.5712 2.4952 2.7448 18 6 2.9612 2.9512 3.1938 19 1 3.2612 3.9695 2.9463 20 6 3.4768 2.4229 4.5076 21 6 2.7820 1.4305 5.1741 22 6 3.2574 0.9417 6.3764 23 6 4.4218 1.4527 6.9186 24 6 5.1141 2.4494 6.2552 25 35 6.7066 3.1494 6.9967 26 6 4.6409 2.9344 5.0490 27 1 2.9709 1.0006 -0.2376 28 1 2.9717 -0.7050 -0.7470 29 1 1.6548 -3.2046 -0.6531 30 1 0.9568 3.2136 2.2020 31 1 1.0290 1.8129 3.3995 32 1 1.8697 1.0344 4.7532 33 1 2.7168 0.1633 6.8945 34 1 4.7907 1.0740 7.8604 35 1 5.1809 3.7131 4.5308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:31 Heat of formation + Delta-G solvation = 70.845293 kcal Electronic energy + Delta-G solvation = -22098.937101 eV Core-core repulsion = 18724.225937 eV Total energy + Delta-G solvation = -3374.711164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.021 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00438 -38.40250 -36.39971 -35.42946 -34.26303 -32.03361 -31.73789 -30.57546 -28.76197 -27.55712 -25.62349 -23.63499 -22.96661 -22.13931 -20.16188 -18.75969 -17.91359 -17.22173 -16.34870 -16.22340 -15.19864 -14.83394 -14.51430 -14.25961 -14.03853 -13.55754 -13.28846 -13.05723 -13.00700 -12.97955 -12.27204 -12.01910 -11.74440 -11.69082 -11.34417 -11.21123 -11.02704 -10.95146 -10.73213 -10.61967 -10.45119 -10.40602 -10.15415 -10.12071 -10.01128 -9.28457 -8.83969 -8.45173 -8.06742 -7.69734 -6.55521 -4.04370 1.55656 1.67827 1.87607 3.05919 3.18737 3.20750 3.36111 3.63039 3.93528 4.03036 4.08223 4.36565 4.60773 4.81382 4.92229 5.07981 5.15496 5.18987 5.28507 5.34929 5.42896 5.55803 5.65148 5.79036 5.91637 6.02652 6.10810 6.16583 6.25209 6.29298 6.48438 6.52291 6.76202 6.97276 7.22587 7.41695 7.85622 8.23531 8.71676 8.95701 9.15025 9.70749 10.50011 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.003418 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.837052 B = 8190.241447 C = 9275.671503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.248 3.752 3 C 0.221 3.779 4 N -0.436 5.436 5 C -0.312 4.312 6 H 0.108 0.892 7 C 0.033 3.967 8 N -0.877 5.877 9 Si 0.927 3.073 10 H -0.284 1.284 11 H -0.272 1.272 12 H -0.273 1.273 13 C 0.476 3.524 14 O -0.553 6.553 15 C -0.166 4.166 16 H 0.118 0.882 17 C -0.150 4.150 18 C -0.093 4.093 19 H 0.116 0.884 20 C -0.027 4.027 21 C -0.021 4.021 22 C -0.123 4.123 23 C -0.094 4.094 24 C -0.100 4.100 25 Br -0.075 7.075 26 C -0.087 4.087 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.274 0.726 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.072 11.902 7.132 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.070 4.070 3 C 0.093 3.907 4 N -0.155 5.155 5 C -0.438 4.438 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.515 5.515 9 Si 0.753 3.247 10 H -0.210 1.210 11 H -0.197 1.197 12 H -0.198 1.198 13 C 0.265 3.735 14 O -0.436 6.436 15 C -0.187 4.187 16 H 0.136 0.864 17 C -0.188 4.188 18 C -0.112 4.112 19 H 0.134 0.866 20 C -0.028 4.028 21 C -0.040 4.040 22 C -0.142 4.142 23 C -0.114 4.114 24 C -0.179 4.179 25 Br 0.010 6.990 26 C -0.107 4.107 27 H 0.100 0.900 28 H 0.145 0.855 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.104 11.842 7.801 15.071 hybrid contribution 0.386 -1.329 -0.612 1.513 sum 5.490 10.513 7.189 13.869 Atomic orbital electron populations 1.80888 1.13584 1.12364 1.08517 1.29264 0.95309 0.89904 0.92517 1.18745 0.81697 1.00656 0.89602 1.43603 1.55958 1.08490 1.07458 1.19667 1.29905 0.80781 1.13493 0.87410 1.25268 0.95007 0.99811 0.97014 1.69851 1.20301 1.35518 1.25878 0.85978 0.79535 0.80816 0.78362 1.20990 1.19688 1.19827 1.19212 0.84126 0.85507 0.84638 1.90592 1.50023 1.80621 1.22344 1.22421 1.03926 0.94783 0.97588 0.86421 1.23050 0.90061 1.02870 1.02811 1.20989 0.99930 0.97971 0.92329 0.86623 1.18754 0.94258 0.96182 0.93646 1.20889 0.98827 0.92167 0.92070 1.20927 0.96498 1.00202 0.96594 1.20886 0.95265 0.95633 0.99601 1.21407 0.94956 1.02683 0.98813 1.96593 1.32433 1.85656 1.84345 1.20629 0.95851 1.00250 0.93962 0.89953 0.85538 0.91546 0.87987 0.88206 0.86281 0.85991 0.86072 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.78 18.54 42.15 0.78 -9.99 16 2 C 0.25 5.23 13.48 -20.76 -0.28 4.95 16 3 C 0.22 4.17 4.91 -6.83 -0.03 4.14 16 4 N -0.44 -9.61 2.60 -117.93 -0.31 -9.92 16 5 C -0.31 -7.69 9.33 -14.94 -0.14 -7.83 16 6 H 0.11 2.83 7.38 -52.48 -0.39 2.45 16 7 C 0.03 0.78 4.88 -17.47 -0.09 0.70 16 8 N -0.88 -21.44 9.46 55.50 0.53 -20.92 16 9 Si 0.93 19.27 29.60 -169.99 -5.03 14.23 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 13 C 0.48 9.94 7.21 -10.98 -0.08 9.86 16 14 O -0.55 -12.87 11.37 5.55 0.06 -12.81 16 15 C -0.17 -2.64 5.16 -91.77 -0.47 -3.11 16 16 H 0.12 1.56 6.53 -51.93 -0.34 1.23 16 17 C -0.15 -2.16 9.58 -26.72 -0.26 -2.41 16 18 C -0.09 -1.32 6.04 -91.76 -0.55 -1.88 16 19 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 20 C -0.03 -0.44 4.35 -104.63 -0.46 -0.89 16 21 C -0.02 -0.36 6.19 -39.58 -0.24 -0.60 16 22 C -0.12 -1.95 10.05 -39.59 -0.40 -2.35 16 23 C -0.09 -1.41 9.79 -39.56 -0.39 -1.80 16 24 C -0.10 -1.51 6.22 -39.52 -0.25 -1.75 16 25 Br -0.08 -0.98 33.70 -68.01 -2.29 -3.27 16 26 C -0.09 -1.33 9.48 -39.56 -0.37 -1.70 16 27 H 0.08 1.18 6.28 -51.93 -0.33 0.86 16 28 H 0.13 2.48 6.41 -51.93 -0.33 2.15 16 29 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 30 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.10 1.58 6.18 -51.93 -0.32 1.26 16 32 H 0.12 2.11 5.80 -52.48 -0.30 1.80 16 33 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -28.61 320.61 -8.70 -37.30 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.26 Total: 5.22 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -4.01 Total: -4.69 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 1.00 Total: -40.83 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.06 Total: -12.81 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.23 kcal Atomic # 35 Polarization: -0.98 SS G_CDS: -2.29 Total: -3.27 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.61 -8.70 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.148 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds