Wall clock time and date at job start Tue Mar 31 2020 05:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47267 * 295.47386 * 3 2 1 5 5 C 1.37100 * 119.99816 * 96.17407 * 4 3 2 6 6 H 1.08003 * 119.99776 * 162.27707 * 5 4 3 7 7 C 1.38941 * 120.00334 * 342.27364 * 5 4 3 8 8 N 1.31419 * 120.00021 * 339.21912 * 7 5 4 9 9 Si 1.86803 * 120.00255 * 159.49495 * 7 5 4 10 10 H 1.48497 * 109.46883 * 269.72507 * 9 7 5 11 11 H 1.48503 * 109.46838 * 29.72558 * 9 7 5 12 12 H 1.48497 * 109.47296 * 149.72390 * 9 7 5 13 13 C 1.34777 * 119.99521 * 276.17224 * 4 3 2 14 14 O 1.21294 * 119.99685 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00307 * 359.97438 * 13 4 3 16 16 H 1.08999 * 115.54931 * 325.72177 * 15 13 4 17 17 C 1.52994 * 117.49638 * 111.39342 * 15 13 4 18 18 C 1.52995 * 60.00403 * 107.48895 * 17 15 13 19 19 H 1.09000 * 117.50342 * 252.51761 * 18 17 15 20 20 C 1.50696 * 117.50056 * 107.48379 * 18 17 15 21 21 C 1.38265 * 119.99574 * 171.38224 * 20 18 17 22 22 C 1.38217 * 120.02163 * 180.02562 * 21 20 18 23 23 C 1.38238 * 120.01237 * 359.97438 * 22 21 20 24 24 C 1.38313 * 119.98515 * 359.97438 * 23 22 21 25 25 Br 1.89106 * 120.00692 * 180.02562 * 24 23 22 26 26 C 1.38193 * 119.99398 * 351.11069 * 20 18 17 27 27 H 1.08997 * 109.47074 * 175.47266 * 3 2 1 28 28 H 1.09004 * 109.47234 * 55.47489 * 3 2 1 29 29 H 0.96998 * 119.99904 * 180.02562 * 8 7 5 30 30 H 1.09000 * 117.50247 * 214.97595 * 17 15 13 31 31 H 1.09004 * 117.50218 * 0.02562 * 17 15 13 32 32 H 1.07998 * 119.99133 * 359.97438 * 21 20 18 33 33 H 1.08003 * 120.00013 * 179.97438 * 22 21 20 34 34 H 1.07996 * 120.01337 * 179.97438 * 23 22 21 35 35 H 1.07996 * 120.00671 * 359.97438 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.5932 1.2469 5 6 3.4461 -1.9184 1.2842 6 1 4.0627 -2.2918 2.0885 7 6 3.0072 -2.7810 0.2874 8 7 1.9610 -2.4640 -0.4421 9 14 3.8993 -4.3949 -0.0109 10 1 4.9732 -4.1884 -1.0155 11 1 4.4972 -4.8725 1.2619 12 1 2.9368 -5.4066 -0.5159 13 6 3.2026 0.1633 2.3573 14 8 3.6076 -0.3282 3.3896 15 6 2.8190 1.6201 2.3161 16 1 3.0253 2.1342 1.3773 17 6 1.5724 2.0446 3.0949 18 6 2.9621 2.4252 3.6093 19 1 3.3339 1.9011 4.4898 20 6 3.3779 3.8685 3.4878 21 6 4.5418 4.3059 4.0927 22 6 4.9233 5.6297 3.9821 23 6 4.1417 6.5171 3.2662 24 6 2.9779 6.0798 2.6601 25 35 1.9085 7.2931 1.6800 26 6 2.5987 4.7536 2.7672 27 1 2.9709 1.0252 -0.0811 28 1 2.9716 -0.5816 -0.8467 29 1 1.6543 -3.0664 -1.1377 30 1 0.9588 2.8383 2.6688 31 1 1.0299 1.2703 3.6375 32 1 5.1525 3.6130 4.6524 33 1 5.8323 5.9711 4.4550 34 1 4.4396 7.5516 3.1801 35 1 1.6921 4.4109 2.2908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:33 Heat of formation + Delta-G solvation = 58.695117 kcal Electronic energy + Delta-G solvation = -21423.798566 eV Core-core repulsion = 18048.560530 eV Total energy + Delta-G solvation = -3375.238036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.021 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01155 -38.83604 -36.47486 -35.50027 -34.27888 -32.47095 -31.87352 -30.71936 -29.35329 -27.53528 -25.67316 -24.01577 -23.05135 -22.18726 -20.41966 -18.88694 -17.92029 -17.40581 -16.54363 -16.27640 -15.48411 -15.04386 -14.84821 -14.38001 -14.16171 -13.67111 -13.51019 -13.44071 -13.17046 -12.99821 -12.28520 -11.92759 -11.82225 -11.68719 -11.55838 -11.32237 -11.24375 -11.19894 -11.02168 -10.60519 -10.47899 -10.43815 -10.39554 -10.31131 -10.08014 -9.30466 -8.97295 -8.73979 -8.54661 -8.08809 -6.54520 -4.04253 0.97030 1.12103 1.47385 3.04554 3.19845 3.23760 3.30060 3.48624 3.71173 3.98056 4.08931 4.31052 4.42103 4.64832 4.80720 4.85379 4.94264 5.06093 5.11430 5.18303 5.24291 5.33334 5.44322 5.54780 5.57399 5.83248 5.89795 6.04517 6.10053 6.14980 6.26909 6.33185 6.50048 6.54550 6.67488 7.42903 7.85836 8.23700 8.74450 8.95269 9.15220 9.69669 10.51389 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.018701 B = 0.002866 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.925893 B = 9766.208421 C =10704.002945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.248 3.752 3 C 0.221 3.779 4 N -0.436 5.436 5 C -0.314 4.314 6 H 0.109 0.891 7 C 0.033 3.967 8 N -0.876 5.876 9 Si 0.928 3.072 10 H -0.275 1.275 11 H -0.269 1.269 12 H -0.285 1.285 13 C 0.482 3.518 14 O -0.573 6.573 15 C -0.158 4.158 16 H 0.116 0.884 17 C -0.147 4.147 18 C -0.097 4.097 19 H 0.129 0.871 20 C -0.033 4.033 21 C -0.095 4.095 22 C -0.112 4.112 23 C -0.102 4.102 24 C -0.086 4.086 25 Br -0.058 7.058 26 C -0.094 4.094 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.274 0.726 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 19.605 2.748 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.071 4.071 3 C 0.094 3.906 4 N -0.155 5.155 5 C -0.441 4.441 6 H 0.127 0.873 7 C -0.171 4.171 8 N -0.515 5.515 9 Si 0.755 3.245 10 H -0.201 1.201 11 H -0.193 1.193 12 H -0.211 1.211 13 C 0.271 3.729 14 O -0.456 6.456 15 C -0.179 4.179 16 H 0.134 0.866 17 C -0.184 4.184 18 C -0.116 4.116 19 H 0.147 0.853 20 C -0.034 4.034 21 C -0.113 4.113 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.166 4.166 25 Br 0.028 6.972 26 C -0.113 4.113 27 H 0.101 0.899 28 H 0.146 0.854 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.378 19.685 2.724 20.015 hybrid contribution 0.864 -1.190 -0.258 1.493 sum 3.242 18.496 2.465 18.939 Atomic orbital electron populations 1.80886 1.13550 1.12043 1.08705 1.29241 0.95296 0.90083 0.92444 1.18755 0.81749 0.98301 0.91840 1.43539 1.56020 1.09720 1.06244 1.19756 1.29993 0.82766 1.11593 0.87298 1.25291 0.94996 0.99760 0.97089 1.69870 1.20231 1.38905 1.22472 0.85880 0.78990 0.80639 0.79010 1.20084 1.19298 1.21063 1.19128 0.83836 0.86320 0.83643 1.90537 1.50643 1.74025 1.30386 1.22408 1.03830 0.95492 0.96171 0.86649 1.23042 0.89898 1.02937 1.02541 1.21048 1.00605 0.90792 0.99124 0.85326 1.19246 0.94279 0.93750 0.96156 1.21199 0.95702 0.95823 0.98610 1.21138 0.99739 0.93208 0.98989 1.21064 0.93407 1.00286 0.97393 1.21723 0.97590 0.94199 1.03042 1.96711 1.68402 1.59533 1.72575 1.21078 1.00336 0.91113 0.98808 0.89917 0.85432 0.91555 0.88226 0.87869 0.84979 0.85109 0.85282 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.01 18.54 42.15 0.78 -10.23 16 2 C 0.25 5.38 13.48 -20.76 -0.28 5.10 16 3 C 0.22 4.32 4.91 -6.83 -0.03 4.29 16 4 N -0.44 -9.97 2.60 -117.93 -0.31 -10.28 16 5 C -0.31 -7.95 9.33 -14.94 -0.14 -8.09 16 6 H 0.11 2.91 7.38 -52.48 -0.39 2.53 16 7 C 0.03 0.79 4.88 -17.47 -0.09 0.70 16 8 N -0.88 -21.76 9.46 55.50 0.53 -21.23 16 9 Si 0.93 19.33 29.60 -169.99 -5.03 14.30 16 10 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.48 10.64 7.34 -10.99 -0.08 10.55 16 14 O -0.57 -14.53 15.91 5.55 0.09 -14.44 16 15 C -0.16 -2.65 4.79 -91.77 -0.44 -3.09 16 16 H 0.12 1.70 6.53 -51.93 -0.34 1.36 16 17 C -0.15 -2.25 9.56 -26.74 -0.26 -2.50 16 18 C -0.10 -1.43 5.55 -91.77 -0.51 -1.94 16 19 H 0.13 2.05 7.67 -51.93 -0.40 1.65 16 20 C -0.03 -0.42 5.61 -104.63 -0.59 -1.01 16 21 C -0.10 -1.05 9.74 -39.58 -0.39 -1.44 16 22 C -0.11 -1.06 10.05 -39.59 -0.40 -1.46 16 23 C -0.10 -1.00 9.79 -39.55 -0.39 -1.39 16 24 C -0.09 -0.96 6.22 -39.51 -0.25 -1.21 16 25 Br -0.06 -0.60 33.70 -68.01 -2.29 -2.89 16 26 C -0.09 -1.13 9.04 -39.56 -0.36 -1.49 16 27 H 0.08 1.25 6.27 -51.93 -0.33 0.93 16 28 H 0.13 2.56 6.41 -51.93 -0.33 2.23 16 29 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.10 1.32 6.18 -51.93 -0.32 1.00 16 31 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.13 1.58 6.03 -52.49 -0.32 1.26 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -29.62 328.53 -8.72 -38.34 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -3.25 Total: 4.46 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -4.18 Total: -2.97 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 1.00 Total: -41.74 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.09 Total: -14.44 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.62 -8.72 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.035 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds