Wall clock time and date at job start Tue Mar 31 2020 05:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46876 * 182.02846 * 3 2 1 5 5 C 1.37092 * 120.00169 * 264.14002 * 4 3 2 6 6 H 1.08006 * 120.00159 * 197.72161 * 5 4 3 7 7 C 1.38956 * 119.99854 * 17.72542 * 5 4 3 8 8 N 1.31408 * 119.99989 * 21.10490 * 7 5 4 9 9 Si 1.86798 * 119.99675 * 201.10801 * 7 5 4 10 10 H 1.48498 * 109.47591 * 89.99754 * 9 7 5 11 11 H 1.48503 * 109.46878 * 209.99750 * 9 7 5 12 12 H 1.48500 * 109.47199 * 329.99661 * 9 7 5 13 13 C 1.34780 * 119.99914 * 84.13818 * 4 3 2 14 14 O 1.21294 * 119.99909 * 180.02562 * 13 4 3 15 15 C 1.50702 * 119.99781 * 0.02562 * 13 4 3 16 16 H 1.08998 * 115.55479 * 34.41513 * 15 13 4 17 17 C 1.53001 * 117.51726 * 248.71189 * 15 13 4 18 18 C 1.53000 * 60.00302 * 252.51910 * 17 15 13 19 19 H 1.09004 * 117.51435 * 107.47397 * 18 17 15 20 20 C 1.50689 * 117.50130 * 252.50936 * 18 17 15 21 21 C 1.38263 * 119.99557 * 8.34904 * 20 18 17 22 22 C 1.38224 * 120.02053 * 179.72797 * 21 20 18 23 23 C 1.38235 * 120.00812 * 0.54328 * 22 21 20 24 24 C 1.38309 * 119.99155 * 359.72823 * 23 22 21 25 25 Br 1.89097 * 120.00891 * 179.97438 * 24 23 22 26 26 C 1.38195 * 119.99674 * 188.62032 * 20 18 17 27 27 H 1.08993 * 109.47279 * 62.03265 * 3 2 1 28 28 H 1.09002 * 109.47331 * 302.02317 * 3 2 1 29 29 H 0.96995 * 119.99579 * 180.02562 * 8 7 5 30 30 H 1.09007 * 117.50225 * 0.02562 * 17 15 13 31 31 H 1.08997 * 117.49918 * 145.02915 * 17 15 13 32 32 H 1.08005 * 119.98958 * 359.97438 * 21 20 18 33 33 H 1.07996 * 119.99715 * 180.27202 * 22 21 20 34 34 H 1.07998 * 120.00560 * 179.70718 * 23 22 21 35 35 H 1.08000 * 120.00601 * 359.97438 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0956 1.3813 0.0489 5 6 3.4381 2.0288 -1.1100 6 1 4.0540 2.9152 -1.0716 7 6 2.9927 1.5447 -2.3339 8 7 1.9432 0.7556 -2.3859 9 14 3.8859 2.0156 -3.9055 10 1 4.9555 1.0237 -4.1833 11 1 2.9227 2.0346 -5.0356 12 1 4.4896 3.3631 -3.7469 13 6 3.2075 2.0149 1.2332 14 8 3.6109 3.1581 1.2736 15 6 2.8316 1.3029 2.5071 16 1 3.0411 0.2335 2.5275 17 6 1.5872 1.7933 3.2501 18 6 2.9790 2.0767 3.8188 19 1 3.3480 3.1008 3.7602 20 6 3.4028 1.3020 5.0399 21 6 2.6225 0.2581 5.5014 22 6 3.0137 -0.4566 6.6180 23 6 4.1795 -0.1205 7.2805 24 6 4.9575 0.9273 6.8225 25 35 6.5520 1.3878 7.7288 26 6 4.5685 1.6386 5.7015 27 1 2.9715 -0.4811 -0.9076 28 1 2.9716 -0.5441 0.8713 29 1 1.6326 0.4174 -3.2402 30 1 1.0399 2.6308 2.8174 31 1 0.9781 1.0464 3.7592 32 1 1.7091 -0.0017 4.9868 33 1 2.4062 -1.2747 6.9756 34 1 4.4826 -0.6759 8.1557 35 1 5.1759 2.4566 5.3433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336148.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:36 Heat of formation + Delta-G solvation = 58.768697 kcal Electronic energy + Delta-G solvation = -21361.183957 eV Core-core repulsion = 17985.949112 eV Total energy + Delta-G solvation = -3375.234845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.021 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.01176 -38.84010 -36.48880 -35.51380 -34.28726 -32.32166 -31.88149 -30.99495 -29.21359 -27.54126 -25.67947 -23.89096 -23.07982 -22.43304 -20.26897 -18.87172 -17.92741 -17.43820 -16.55544 -16.28791 -15.48749 -15.08367 -14.81722 -14.39766 -14.15472 -13.67016 -13.52708 -13.44443 -13.16790 -13.01007 -12.31774 -11.95268 -11.83372 -11.68945 -11.47661 -11.33653 -11.24816 -11.19656 -11.04001 -10.61512 -10.48871 -10.45168 -10.40252 -10.32581 -10.08026 -9.30633 -8.93287 -8.77404 -8.54699 -8.09150 -6.55118 -4.04306 0.95633 1.13343 1.47455 3.04424 3.19893 3.23767 3.29650 3.48128 3.70528 3.96723 4.08529 4.30196 4.41905 4.70204 4.78687 4.84841 4.92205 5.03777 5.09682 5.11045 5.24639 5.33097 5.42803 5.56016 5.66435 5.77578 5.91076 6.05141 6.07354 6.20253 6.21131 6.28255 6.48341 6.55258 6.67890 7.42754 7.85680 8.23555 8.73193 8.95201 9.14955 9.69521 10.50860 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.018631 B = 0.002662 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.532140 B =10515.202178 C =11479.684953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.248 3.752 3 C 0.222 3.778 4 N -0.436 5.436 5 C -0.314 4.314 6 H 0.109 0.891 7 C 0.033 3.967 8 N -0.876 5.876 9 Si 0.928 3.072 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.482 3.518 14 O -0.572 6.572 15 C -0.158 4.158 16 H 0.116 0.884 17 C -0.145 4.145 18 C -0.098 4.098 19 H 0.128 0.872 20 C -0.033 4.033 21 C -0.107 4.107 22 C -0.111 4.111 23 C -0.102 4.102 24 C -0.087 4.087 25 Br -0.057 7.057 26 C -0.082 4.082 27 H 0.127 0.873 28 H 0.083 0.917 29 H 0.274 0.726 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.373 -5.296 18.869 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.070 4.070 3 C 0.094 3.906 4 N -0.156 5.156 5 C -0.441 4.441 6 H 0.127 0.873 7 C -0.171 4.171 8 N -0.514 5.514 9 Si 0.755 3.245 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.270 3.730 14 O -0.455 6.455 15 C -0.179 4.179 16 H 0.134 0.866 17 C -0.183 4.183 18 C -0.116 4.116 19 H 0.145 0.855 20 C -0.034 4.034 21 C -0.125 4.125 22 C -0.130 4.130 23 C -0.122 4.122 24 C -0.166 4.166 25 Br 0.028 6.972 26 C -0.102 4.102 27 H 0.145 0.855 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.411 -4.635 19.039 20.328 hybrid contribution 0.310 -0.071 -1.242 1.282 sum 5.721 -4.706 17.796 19.277 Atomic orbital electron populations 1.80880 1.13553 1.08519 1.12285 1.29237 0.95294 0.92426 0.90067 1.18743 0.81758 0.86326 1.03778 1.43539 1.56151 1.10078 1.05786 1.19758 1.30034 1.12588 0.81754 0.87296 1.25289 0.94958 0.97214 0.99668 1.69860 1.19983 1.34231 1.27367 0.85883 0.79006 0.79365 0.80286 1.20079 1.21079 1.19290 1.19138 0.83839 0.86342 0.83648 1.90542 1.50569 1.17968 1.86417 1.22407 1.03853 0.99715 0.91909 0.86615 1.23039 0.89856 1.03564 1.01827 1.21036 1.00517 1.00187 0.89897 0.85451 1.19230 0.93806 0.95308 0.95043 1.21289 0.99860 0.94972 0.96356 1.21119 0.96271 0.99882 0.95704 1.21059 0.94755 0.96137 1.00203 1.21732 0.95031 1.00881 0.98955 1.96702 1.30870 1.93098 1.76538 1.20987 0.96284 0.99490 0.93452 0.85530 0.89897 0.91563 0.87915 0.88156 0.85043 0.85150 0.85280 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.86 18.54 42.15 0.78 -10.08 16 2 C 0.25 5.30 13.47 -20.76 -0.28 5.03 16 3 C 0.22 4.27 4.91 -6.82 -0.03 4.24 16 4 N -0.44 -9.94 2.60 -117.93 -0.31 -10.25 16 5 C -0.31 -7.95 9.32 -14.93 -0.14 -8.09 16 6 H 0.11 2.92 7.39 -52.48 -0.39 2.53 16 7 C 0.03 0.79 4.87 -17.47 -0.09 0.70 16 8 N -0.88 -21.66 9.47 55.50 0.53 -21.13 16 9 Si 0.93 19.34 29.60 -169.99 -5.03 14.30 16 10 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 C 0.48 10.62 7.35 -10.98 -0.08 10.53 16 14 O -0.57 -14.59 15.91 5.55 0.09 -14.50 16 15 C -0.16 -2.62 4.81 -91.77 -0.44 -3.06 16 16 H 0.12 1.66 6.53 -51.93 -0.34 1.32 16 17 C -0.15 -2.16 9.56 -26.73 -0.26 -2.42 16 18 C -0.10 -1.44 5.55 -91.77 -0.51 -1.95 16 19 H 0.13 2.07 7.67 -51.93 -0.40 1.67 16 20 C -0.03 -0.41 5.61 -104.63 -0.59 -1.00 16 21 C -0.11 -1.15 9.30 -39.58 -0.37 -1.52 16 22 C -0.11 -1.04 10.05 -39.59 -0.40 -1.44 16 23 C -0.10 -1.00 9.79 -39.56 -0.39 -1.39 16 24 C -0.09 -0.97 6.22 -39.52 -0.25 -1.22 16 25 Br -0.06 -0.59 33.70 -68.01 -2.29 -2.89 16 26 C -0.08 -1.01 9.48 -39.56 -0.37 -1.39 16 27 H 0.13 2.51 6.45 -51.93 -0.33 2.18 16 28 H 0.08 1.22 6.26 -51.93 -0.33 0.90 16 29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.10 1.23 6.17 -51.93 -0.32 0.91 16 32 H 0.13 1.27 6.02 -52.48 -0.32 0.96 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -29.64 328.53 -8.72 -38.36 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -3.25 Total: 4.20 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -4.19 Total: -2.97 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 1.00 Total: -41.46 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.09 Total: -14.50 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.30 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.64 -8.72 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336148.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.127 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds