Wall clock time and date at job start Tue Mar 31 2020 05:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46558 * 160.29433 * 3 2 1 5 5 C 1.37098 * 119.99835 * 263.86383 * 4 3 2 6 6 H 1.07998 * 120.00624 * 200.30556 * 5 4 3 7 7 C 1.38951 * 120.00003 * 20.30133 * 5 4 3 8 8 N 1.31411 * 119.99949 * 21.38051 * 7 5 4 9 9 Si 1.86796 * 120.00427 * 201.37599 * 7 5 4 10 10 H 1.48495 * 109.47004 * 60.00067 * 9 7 5 11 11 H 1.48502 * 109.47614 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47016 * 300.00235 * 9 7 5 13 13 C 1.34773 * 120.00735 * 83.87001 * 4 3 2 14 14 O 1.21286 * 120.00461 * 179.97438 * 13 4 3 15 15 C 1.50709 * 119.99682 * 359.97438 * 13 4 3 16 16 H 1.09004 * 115.54751 * 34.28086 * 15 13 4 17 17 C 1.52993 * 117.49975 * 248.61195 * 15 13 4 18 18 C 1.52996 * 117.50076 * 179.97438 * 15 13 4 19 19 H 1.08997 * 117.49749 * 214.97739 * 18 15 13 20 20 C 1.50700 * 117.49548 * 0.02562 * 18 15 13 21 21 C 1.38263 * 119.99256 * 239.99436 * 20 18 15 22 22 C 1.38216 * 120.02108 * 180.02562 * 21 20 18 23 23 C 1.38248 * 120.01000 * 359.97438 * 22 21 20 24 24 C 1.38307 * 119.98647 * 359.97438 * 23 22 21 25 25 Br 1.89097 * 120.00668 * 180.02562 * 24 23 22 26 26 C 1.38195 * 119.99557 * 59.72679 * 20 18 15 27 27 H 1.08997 * 109.47158 * 40.28856 * 3 2 1 28 28 H 1.09004 * 109.46612 * 280.28782 * 3 2 1 29 29 H 0.97001 * 120.00416 * 180.02562 * 8 7 5 30 30 H 1.09006 * 117.49767 * 0.02562 * 17 15 13 31 31 H 1.09004 * 117.49976 * 144.99328 * 17 15 13 32 32 H 1.08000 * 119.99160 * 359.97438 * 21 20 18 33 33 H 1.08001 * 120.00219 * 180.02562 * 22 21 20 34 34 H 1.07999 * 120.00496 * 179.97438 * 23 22 21 35 35 H 1.08000 * 120.00771 * 359.97438 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3012 -0.4657 5 6 3.4437 1.4719 -1.7808 6 1 4.0936 2.2859 -2.0662 7 6 2.9602 0.5977 -2.7465 8 7 1.8775 -0.1087 -2.5104 9 14 3.8491 0.4264 -4.3805 10 1 5.2396 -0.0366 -4.1413 11 1 3.1372 -0.5616 -5.2303 12 1 3.8770 1.7419 -5.0691 13 6 3.2023 2.3299 0.3984 14 8 3.6064 3.4065 0.0129 15 6 2.8193 2.1424 1.8439 16 1 3.0257 1.1567 2.2609 17 6 1.5731 2.8747 2.3453 18 6 2.9635 3.3479 2.7750 19 1 3.2646 3.1553 3.8047 20 6 3.4769 4.6320 2.1763 21 6 4.6420 5.2011 2.6564 22 6 5.1132 6.3791 2.1081 23 6 4.4199 6.9886 1.0789 24 6 3.2551 6.4191 0.5977 25 35 2.3068 7.2519 -0.8105 26 6 2.7863 5.2376 1.1438 27 1 2.9717 -0.7831 -0.6645 28 1 2.9714 -0.1827 1.0112 29 1 1.5402 -0.7193 -3.1844 30 1 1.0299 3.4918 1.6295 31 1 0.9595 2.3708 3.0921 32 1 5.1836 4.7255 3.4607 33 1 6.0234 6.8232 2.4831 34 1 4.7880 7.9093 0.6508 35 1 1.8788 4.7905 0.7657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336149.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:39 Heat of formation + Delta-G solvation = 71.155734 kcal Electronic energy + Delta-G solvation = -22284.645088 eV Core-core repulsion = 18909.947386 eV Total energy + Delta-G solvation = -3374.697703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.021 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.99292 -38.37270 -36.36321 -35.39875 -34.21889 -31.95276 -31.84463 -30.26450 -28.82088 -27.51850 -25.61316 -23.72750 -22.94868 -21.84244 -20.32950 -18.75236 -17.87339 -17.16456 -16.34219 -16.19700 -15.16190 -14.80217 -14.53305 -14.21957 -14.02153 -13.54246 -13.26318 -13.04233 -12.97617 -12.94344 -12.20348 -12.00023 -11.69955 -11.66344 -11.29406 -11.16152 -11.03024 -10.91121 -10.64609 -10.60365 -10.43680 -10.38671 -10.11813 -10.04360 -9.88504 -9.25471 -8.91279 -8.23533 -8.00510 -7.71919 -6.52192 -4.02063 1.52820 1.74362 2.08068 3.08833 3.20858 3.22899 3.38796 3.66056 3.96248 4.04363 4.11224 4.37108 4.62986 4.83663 4.94387 5.05178 5.13980 5.22919 5.33703 5.37018 5.45335 5.56873 5.59397 5.76224 5.91920 6.03524 6.09598 6.19948 6.25516 6.33253 6.44999 6.64253 6.68000 6.92110 7.22393 7.45526 7.90322 8.26739 8.75979 8.99191 9.18021 9.74042 10.53623 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.004781 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.123194 B = 5855.220221 C = 7001.627294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.247 3.753 3 C 0.222 3.778 4 N -0.435 5.435 5 C -0.312 4.312 6 H 0.107 0.893 7 C 0.034 3.966 8 N -0.874 5.874 9 Si 0.925 3.075 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.477 3.523 14 O -0.550 6.550 15 C -0.166 4.166 16 H 0.118 0.882 17 C -0.152 4.152 18 C -0.093 4.093 19 H 0.117 0.883 20 C -0.031 4.031 21 C -0.101 4.101 22 C -0.131 4.131 23 C -0.098 4.098 24 C -0.093 4.093 25 Br -0.069 7.069 26 C -0.005 4.005 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.274 0.726 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 7.682 10.114 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.071 4.071 3 C 0.094 3.906 4 N -0.155 5.155 5 C -0.439 4.439 6 H 0.125 0.875 7 C -0.170 4.170 8 N -0.513 5.513 9 Si 0.751 3.249 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.265 3.735 14 O -0.432 6.432 15 C -0.188 4.188 16 H 0.136 0.864 17 C -0.190 4.190 18 C -0.112 4.112 19 H 0.135 0.865 20 C -0.032 4.032 21 C -0.119 4.119 22 C -0.150 4.150 23 C -0.118 4.118 24 C -0.172 4.172 25 Br 0.016 6.984 26 C -0.025 4.025 27 H 0.140 0.860 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.535 8.376 9.233 12.721 hybrid contribution 0.920 -0.703 -0.863 1.444 sum 3.455 7.673 8.370 11.869 Atomic orbital electron populations 1.80881 1.13574 1.08426 1.12285 1.29219 0.95291 0.92628 0.89992 1.18677 0.81803 0.90254 0.99824 1.43580 1.56135 1.06879 1.08885 1.19635 1.27860 1.15418 0.81005 0.87495 1.25275 0.94783 0.97265 0.99691 1.69838 1.17970 1.26884 1.36567 0.86008 0.79420 0.78428 0.81040 1.19709 1.21017 1.19764 1.19241 0.84075 0.84321 0.85819 1.90602 1.49829 1.24330 1.78483 1.22436 1.03935 0.97116 0.95272 0.86416 1.23054 0.90124 1.02761 1.03012 1.20999 0.99932 0.92159 0.98083 0.86532 1.18776 0.94843 0.93880 0.95706 1.20849 0.95409 0.95638 1.00051 1.20848 0.99974 0.96517 0.97622 1.20883 0.93833 0.99926 0.97115 1.21488 0.98761 0.98914 0.98041 1.96616 1.74990 1.79748 1.47050 1.20690 0.99093 0.90457 0.92267 0.86023 0.89873 0.91586 0.88281 0.87957 0.86295 0.86065 0.86104 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.92 18.54 42.15 0.78 -10.14 16 2 C 0.25 5.28 13.34 -20.76 -0.28 5.01 16 3 C 0.22 4.23 4.91 -6.83 -0.03 4.20 16 4 N -0.44 -9.72 2.60 -117.93 -0.31 -10.03 16 5 C -0.31 -7.83 9.27 -14.93 -0.14 -7.97 16 6 H 0.11 2.86 7.43 -52.49 -0.39 2.47 16 7 C 0.03 0.83 4.84 -17.47 -0.08 0.74 16 8 N -0.87 -21.85 9.59 55.50 0.53 -21.31 16 9 Si 0.92 19.60 29.60 -169.99 -5.03 14.57 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.48 10.09 7.20 -10.98 -0.08 10.01 16 14 O -0.55 -13.03 11.35 5.55 0.06 -12.97 16 15 C -0.17 -2.67 5.16 -91.77 -0.47 -3.15 16 16 H 0.12 1.57 6.53 -51.93 -0.34 1.23 16 17 C -0.15 -2.25 9.57 -26.72 -0.26 -2.50 16 18 C -0.09 -1.32 6.04 -91.76 -0.55 -1.87 16 19 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 20 C -0.03 -0.50 4.38 -104.63 -0.46 -0.96 16 21 C -0.10 -1.44 9.74 -39.58 -0.39 -1.82 16 22 C -0.13 -1.80 10.05 -39.59 -0.40 -2.19 16 23 C -0.10 -1.48 9.79 -39.55 -0.39 -1.86 16 24 C -0.09 -1.60 6.22 -39.52 -0.25 -1.85 16 25 Br -0.07 -1.14 33.70 -68.01 -2.29 -3.43 16 26 C -0.01 -0.09 5.90 -39.56 -0.23 -0.33 16 27 H 0.12 2.38 6.63 -51.93 -0.34 2.04 16 28 H 0.08 1.19 6.27 -51.93 -0.33 0.87 16 29 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.10 1.66 6.18 -51.93 -0.32 1.34 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.12 2.41 5.76 -52.49 -0.30 2.10 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -29.65 320.68 -8.70 -38.34 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.27 Total: 4.69 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -4.00 Total: -4.55 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 1.01 Total: -41.48 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.06 Total: -12.97 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Atomic # 35 Polarization: -1.14 SS G_CDS: -2.29 Total: -3.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.65 -8.70 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336149.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.500 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds