Wall clock time and date at job start Tue Mar 31 2020 04:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47437 * 2 1 4 4 C 1.53005 * 109.47193 * 239.99872 * 2 1 3 5 5 C 1.50708 * 109.46983 * 120.00207 * 2 1 3 6 6 O 1.21284 * 119.99972 * 359.97438 * 5 2 1 7 7 N 1.34773 * 119.99870 * 180.02562 * 5 2 1 8 8 C 1.46500 * 120.00194 * 179.97438 * 7 5 2 9 9 C 1.52997 * 109.47306 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46986 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99970 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00222 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99626 * 359.97438 * 12 10 9 14 14 C 1.50699 * 109.47198 * 269.99560 * 13 12 10 15 15 H 1.08001 * 119.99641 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99899 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99984 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00252 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46948 * 89.99779 * 18 16 14 20 20 H 1.48494 * 109.47619 * 209.99825 * 18 16 14 21 21 H 1.48503 * 109.47112 * 330.00458 * 18 16 14 22 22 C 1.46503 * 120.00342 * 179.97438 * 12 10 9 23 23 C 1.50695 * 109.47313 * 270.00350 * 22 12 10 24 24 C 1.38678 * 120.41675 * 270.25293 * 23 22 12 25 25 C 1.38627 * 118.41930 * 180.24221 * 24 23 22 26 26 C 1.38232 * 119.16085 * 359.75178 * 25 24 23 27 27 N 1.31857 * 120.76541 * 359.97438 * 26 25 24 28 28 C 1.31889 * 121.72235 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47410 * 300.00092 * 1 2 3 30 30 H 1.08998 * 109.47169 * 60.00203 * 1 2 3 31 31 H 1.09004 * 109.47183 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47170 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46775 * 300.00038 * 3 2 1 34 34 H 1.09001 * 109.46896 * 59.99593 * 3 2 1 35 35 H 1.09004 * 109.47115 * 300.00114 * 4 2 1 36 36 H 1.08998 * 109.47124 * 59.99898 * 4 2 1 37 37 H 1.09003 * 109.47122 * 180.02562 * 4 2 1 38 38 H 0.96999 * 120.00133 * 359.97438 * 7 5 2 39 39 H 1.08999 * 109.46792 * 59.99657 * 8 7 5 40 40 H 1.09001 * 109.46647 * 300.00161 * 8 7 5 41 41 H 1.08999 * 109.47464 * 60.00081 * 9 8 7 42 42 H 1.09002 * 109.46917 * 299.99515 * 9 8 7 43 43 H 1.09000 * 109.46928 * 30.00295 * 13 12 10 44 44 H 1.09006 * 109.46774 * 149.99687 * 13 12 10 45 45 H 0.97003 * 120.00146 * 180.02562 * 17 16 14 46 46 H 1.09001 * 109.46632 * 150.00159 * 22 12 10 47 47 H 1.08996 * 109.46728 * 30.00153 * 22 12 10 48 48 H 1.07994 * 120.78944 * 359.96926 * 24 23 22 49 49 H 1.07997 * 120.42083 * 179.72800 * 25 24 23 50 50 H 1.07999 * 119.61954 * 180.02562 * 26 25 24 51 51 H 1.08002 * 119.61237 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 8 1.2441 -1.1710 2.0291 7 7 3.3573 -0.8332 1.4440 8 6 3.8457 -1.5233 2.6405 9 6 5.3757 -1.5234 2.6404 10 6 5.8780 -2.2328 3.8714 11 8 5.0898 -2.6926 4.6704 12 7 7.2030 -2.3564 4.0846 13 6 8.1551 -1.8015 3.1191 14 6 8.4808 -2.8427 2.0795 15 1 8.0239 -3.8199 2.1324 16 6 9.3611 -2.5474 1.0603 17 7 9.6449 -3.4559 0.1528 18 14 10.1506 -0.8570 0.9685 19 1 11.4243 -0.8635 1.7320 20 1 10.4258 -0.5155 -0.4502 21 1 9.2296 0.1518 1.5509 22 6 7.6914 -3.0455 5.2816 23 6 7.8596 -2.0504 6.4007 24 6 9.0638 -1.3846 6.5731 25 6 9.1746 -0.4817 7.6192 26 6 8.0871 -0.2727 8.4466 27 7 6.9553 -0.9198 8.2493 28 6 6.8141 -1.7857 7.2646 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2493 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 3.9877 -0.4645 0.8056 39 1 3.4826 -2.5511 2.6406 40 1 3.4820 -1.0093 3.5302 41 1 5.7391 -0.4958 2.6400 42 1 5.7389 -2.0378 1.7506 43 1 7.7150 -0.9297 2.6350 44 1 9.0679 -1.5072 3.6371 45 1 10.2646 -3.2483 -0.5641 46 1 8.6513 -3.5142 5.0648 47 1 6.9731 -3.8093 5.5795 48 1 9.8969 -1.5685 5.9110 49 1 10.0989 0.0514 7.7859 50 1 8.1651 0.4294 9.2635 51 1 5.8717 -2.2970 7.1346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063485030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:42 Heat of formation + Delta-G solvation = -55.234804 kcal Electronic energy + Delta-G solvation = -30815.754885 eV Core-core repulsion = 26714.512944 eV Total energy + Delta-G solvation = -4101.241941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.27279 -40.06525 -39.10494 -35.84199 -35.52559 -34.95854 -33.13270 -32.27485 -31.64854 -30.44227 -28.24384 -27.54811 -27.31515 -26.35803 -24.20011 -23.46742 -22.59188 -22.26873 -21.53478 -19.61479 -18.29118 -17.31087 -16.95369 -16.77882 -16.75618 -16.06893 -15.72933 -15.65877 -15.39240 -15.18887 -14.72369 -14.33608 -14.13913 -13.93515 -13.79182 -13.63315 -13.30718 -13.02613 -12.93435 -12.72527 -12.56562 -12.50193 -12.35275 -12.17235 -12.03864 -11.90390 -11.88821 -11.54364 -11.51265 -11.19820 -11.10269 -11.08695 -11.00844 -10.78324 -10.42058 -9.85266 -9.69587 -9.66411 -9.39950 -9.30658 -8.94851 -8.89036 -8.81657 -7.97298 -6.35183 -4.38309 1.19245 1.39729 2.71823 3.04686 3.10841 3.12334 3.15231 3.17858 3.68284 4.08877 4.12686 4.49740 4.57080 4.59477 4.70130 4.89864 4.94636 4.99449 5.04631 5.08854 5.16820 5.19131 5.23789 5.34750 5.37593 5.41587 5.52603 5.54027 5.62890 5.68907 5.74011 5.78057 5.83840 5.89751 5.97759 6.02774 6.07117 6.13344 6.16774 6.19143 6.23323 6.31144 6.45247 6.50228 6.53736 6.83477 7.10864 7.28308 7.56407 7.92791 8.08917 8.24206 8.29911 8.66831 8.74921 9.23227 10.77076 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007739 B = 0.003430 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.151636 B = 8160.628841 C =10631.669147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.142 4.142 5 C 0.520 3.480 6 O -0.540 6.540 7 N -0.727 5.727 8 C 0.136 3.864 9 C -0.151 4.151 10 C 0.527 3.473 11 O -0.562 6.562 12 N -0.586 5.586 13 C 0.209 3.791 14 C -0.545 4.545 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.887 5.887 18 Si 0.869 3.131 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.265 1.265 22 C 0.160 3.840 23 C -0.147 4.147 24 C -0.063 4.063 25 C -0.180 4.180 26 C 0.090 3.910 27 N -0.490 5.490 28 C 0.118 3.882 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.400 0.600 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.034 0.966 44 H 0.028 0.972 45 H 0.268 0.732 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.136 0.864 49 H 0.131 0.869 50 H 0.150 0.850 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.969 9.542 2.155 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.198 4.198 4 C -0.199 4.199 5 C 0.306 3.694 6 O -0.417 6.417 7 N -0.379 5.379 8 C 0.013 3.987 9 C -0.191 4.191 10 C 0.315 3.685 11 O -0.442 6.442 12 N -0.315 5.315 13 C 0.088 3.912 14 C -0.583 4.583 15 H 0.098 0.902 16 C -0.125 4.125 17 N -0.524 5.524 18 Si 0.696 3.304 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.189 1.189 22 C 0.037 3.963 23 C -0.150 4.150 24 C -0.089 4.089 25 C -0.199 4.199 26 C -0.067 4.067 27 N -0.199 5.199 28 C -0.039 4.039 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.234 0.766 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.078 0.922 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.153 0.847 49 H 0.149 0.851 50 H 0.168 0.832 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.517 9.070 3.533 12.299 hybrid contribution 1.993 0.933 -1.203 2.507 sum -5.524 10.003 2.330 11.662 Atomic orbital electron populations 1.21649 0.92058 1.02846 1.01853 1.20828 0.98006 0.96414 0.93826 1.21873 1.01377 0.93811 1.02778 1.21884 1.01549 1.00681 0.95832 1.20529 0.82117 0.79523 0.87213 1.90700 1.55337 1.48557 1.47058 1.46046 1.07192 1.58887 1.25795 1.21061 0.92370 0.98244 0.87041 1.21795 0.95157 1.02594 0.99554 1.20144 0.82140 0.79585 0.86637 1.90635 1.55252 1.50478 1.47838 1.47899 1.05891 1.55891 1.21845 1.19839 0.88313 0.95051 0.87981 1.21361 1.27664 1.00433 1.08868 0.90185 1.24863 0.95789 0.96732 0.95148 1.69884 1.34539 1.33850 1.14102 0.86964 0.80546 0.84873 0.78042 1.19875 1.20778 1.18941 1.20163 1.01676 0.92207 0.82296 1.21456 0.94731 1.00262 0.98560 1.21624 0.97509 0.93669 0.96103 1.22104 1.00498 1.00294 0.97040 1.22726 0.88686 0.97136 0.98185 1.67735 1.25169 1.07194 1.19794 1.22896 0.98518 0.93218 0.89259 0.92006 0.92155 0.91917 0.91987 0.91390 0.92076 0.91924 0.91409 0.91829 0.76555 0.90670 0.91023 0.88972 0.86708 0.94777 0.95394 0.92227 0.88910 0.89247 0.84662 0.85078 0.83238 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 7.76 37.16 0.29 -0.98 16 2 C -0.09 -0.89 0.87 -155.66 -0.14 -1.03 16 3 C -0.14 -1.17 8.37 37.16 0.31 -0.86 16 4 C -0.14 -1.25 8.37 37.16 0.31 -0.94 16 5 C 0.52 7.28 6.48 -10.98 -0.07 7.21 16 6 O -0.54 -9.76 15.98 5.55 0.09 -9.67 16 7 N -0.73 -9.49 5.34 -60.29 -0.32 -9.81 16 8 C 0.14 2.12 4.96 -4.04 -0.02 2.10 16 9 C -0.15 -2.38 4.37 -27.89 -0.12 -2.50 16 10 C 0.53 9.75 7.67 -10.99 -0.08 9.67 16 11 O -0.56 -11.33 15.12 5.55 0.08 -11.25 16 12 N -0.59 -10.78 2.44 -176.43 -0.43 -11.21 16 13 C 0.21 4.15 4.03 -5.19 -0.02 4.13 16 14 C -0.55 -13.08 9.84 -34.44 -0.34 -13.42 16 15 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 16 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.89 -24.18 13.96 55.43 0.77 -23.41 16 18 Si 0.87 18.26 27.47 -169.99 -4.67 13.60 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.26 -5.19 6.54 56.52 0.37 -4.82 16 22 C 0.16 2.64 5.56 -5.19 -0.03 2.61 16 23 C -0.15 -2.25 5.48 -104.48 -0.57 -2.82 16 24 C -0.06 -0.86 9.86 -39.28 -0.39 -1.24 16 25 C -0.18 -2.16 10.11 -39.44 -0.40 -2.56 16 26 C 0.09 1.15 11.18 -17.54 -0.20 0.96 16 27 N -0.49 -7.65 10.36 -13.25 -0.14 -7.78 16 28 C 0.12 1.88 10.86 -17.55 -0.19 1.69 16 29 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.06 0.48 7.56 -51.93 -0.39 0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.54 7.56 -51.93 -0.39 0.14 16 38 H 0.40 4.24 7.31 -40.82 -0.30 3.94 16 39 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 40 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.09 1.30 7.40 -51.93 -0.38 0.92 16 42 H 0.11 1.90 8.00 -51.93 -0.42 1.48 16 43 H 0.03 0.66 5.50 -51.93 -0.29 0.37 16 44 H 0.03 0.54 7.50 -51.93 -0.39 0.15 16 45 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 46 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 47 H 0.09 1.48 7.37 -51.93 -0.38 1.10 16 48 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 49 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 50 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 51 H 0.16 2.62 7.62 -52.49 -0.40 2.22 16 LS Contribution 420.17 15.07 6.33 6.33 Total: -1.00 -31.16 420.17 -8.45 -39.61 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.41 Total: 9.72 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.75 Total: 3.88 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.12 Total: -52.21 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.17 Total: -20.93 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.67 Total: 13.60 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -31.16 -8.45 -39.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063485030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.624 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds