Wall clock time and date at job start Tue Mar 31 2020 05:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 S 1.81405 * 109.47169 * 269.97864 * 8 7 6 10 10 C 1.81396 * 102.99832 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.46801 * 180.02562 * 10 9 8 12 12 O 1.21276 * 120.00145 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99893 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99841 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47458 * 89.99729 * 14 13 11 16 16 H 1.08000 * 120.00231 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00278 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99744 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00342 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47482 * 89.99671 * 19 17 15 21 21 H 1.48508 * 109.47014 * 209.99733 * 19 17 15 22 22 H 1.48507 * 109.46815 * 329.99380 * 19 17 15 23 23 C 1.46503 * 119.99998 * 359.97438 * 13 11 10 24 24 C 1.53000 * 109.46775 * 90.00143 * 23 13 11 25 25 C 1.47204 * 109.47100 * 179.97438 * 24 23 13 26 26 N 9.58415 * 118.84074 * 354.23332 * 6 1 2 27 27 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 28 28 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 32 32 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 33 33 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 34 34 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 35 35 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 36 36 H 1.09002 * 109.47180 * 299.99677 * 10 9 8 37 37 H 1.08998 * 109.47234 * 60.00067 * 10 9 8 38 38 H 1.09006 * 109.46843 * 209.99859 * 14 13 11 39 39 H 1.08996 * 109.47034 * 329.98879 * 14 13 11 40 40 H 0.96998 * 119.99979 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.47214 * 210.00637 * 23 13 11 42 42 H 1.09002 * 109.46762 * 330.00805 * 23 13 11 43 43 H 1.08994 * 109.47653 * 300.00225 * 24 23 13 44 44 H 1.09009 * 109.46640 * 60.00545 * 24 23 13 45 45 H 1.08006 * 120.02917 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 16 6.1647 2.6303 -1.7101 10 6 7.9645 2.7266 -1.5055 11 6 8.6229 2.7623 -2.8606 12 8 7.9447 2.7258 -3.8654 13 7 9.9654 2.8336 -2.9559 14 6 10.6053 2.8688 -4.2733 15 6 10.7494 4.2997 -4.7237 16 1 10.3990 5.1026 -4.0921 17 6 11.3277 4.5838 -5.9427 18 7 11.7541 3.6060 -6.7121 19 14 11.5070 6.3574 -6.5007 20 1 12.8119 6.8929 -6.0367 21 1 11.4458 6.4185 -7.9833 22 1 10.4055 7.1709 -5.9259 23 6 10.7846 2.8771 -1.7421 24 6 11.1463 1.4517 -1.3198 25 6 11.9700 1.4953 -0.1005 26 7 12.6053 1.5334 0.8436 27 6 3.4311 1.2849 -0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2128 2.3203 -0.0106 32 1 1.3339 4.5114 0.0011 33 1 3.7922 4.6381 0.0002 34 1 5.8756 3.5067 0.5138 35 1 5.9714 1.7293 0.5143 36 1 8.2196 3.6316 -0.9541 37 1 8.3146 1.8542 -0.9539 38 1 11.5905 2.4065 -4.2111 39 1 9.9922 2.3223 -4.9898 40 1 12.1613 3.8059 -7.5695 41 1 11.6967 3.4402 -1.9394 42 1 10.2241 3.3617 -0.9427 43 1 10.2342 0.8886 -1.1225 44 1 11.7069 0.9671 -2.1193 45 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064376254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:03 Heat of formation + Delta-G solvation = -19.369827 kcal Electronic energy + Delta-G solvation = -26381.769652 eV Core-core repulsion = 22491.284048 eV Total energy + Delta-G solvation = -3890.485604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.37845 -39.26547 -37.89113 -36.86599 -35.29173 -32.96395 -32.82736 -30.90551 -30.76150 -30.12732 -27.82902 -27.11105 -26.70509 -24.08473 -22.88584 -22.78105 -21.49893 -18.81930 -18.09736 -17.66147 -16.70220 -16.56506 -16.50287 -16.26494 -16.23036 -16.01887 -15.31991 -15.08996 -14.75191 -14.65960 -14.33867 -14.13653 -13.85909 -13.70223 -13.38157 -13.20389 -12.90689 -12.61242 -12.58426 -12.47511 -12.37431 -12.24630 -11.97448 -11.81151 -11.72588 -11.35412 -11.26581 -11.10790 -11.01652 -10.90412 -10.64488 -10.20986 -9.95796 -9.74016 -9.18325 -9.00161 -8.48833 -8.43915 -7.93394 -7.53744 -6.10530 -4.15295 0.76915 1.21380 1.77411 2.57941 2.66719 2.75042 2.96268 3.17564 3.27955 3.35513 3.39506 3.57175 3.61663 4.12006 4.38511 4.40709 4.49959 4.69485 4.78430 4.80475 4.84948 4.86923 4.96852 4.99160 5.08142 5.12479 5.14027 5.19624 5.24896 5.29414 5.34321 5.41721 5.42922 5.75939 5.76812 6.01012 6.02096 6.17230 6.32532 6.46332 6.85335 7.11472 7.30659 7.37195 7.52578 7.85087 8.13177 8.15828 8.75967 8.91863 9.50306 10.97642 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.002284 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.475973 B =12255.302838 C =13882.723578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.125 3.875 4 C -0.206 4.206 5 C -0.080 4.080 6 C -0.138 4.138 7 C -0.028 4.028 8 C -0.075 4.075 9 S -0.162 6.162 10 C -0.134 4.134 11 C 0.524 3.476 12 O -0.510 6.510 13 N -0.593 5.593 14 C 0.246 3.754 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.117 3.883 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.445 5.445 27 C -0.133 4.133 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.037 0.963 39 H 0.048 0.952 40 H 0.264 0.736 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.904 -4.883 16.848 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.080 3.920 4 C -0.226 4.226 5 C -0.098 4.098 6 C -0.158 4.158 7 C -0.029 4.029 8 C -0.222 4.222 9 S 0.067 5.933 10 C -0.286 4.286 11 C 0.308 3.692 12 O -0.385 6.385 13 N -0.325 5.325 14 C 0.127 3.873 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.010 4.010 24 C -0.092 4.092 25 C -0.102 4.102 26 N -0.122 5.122 27 C -0.154 4.154 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.137 0.863 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.663 -5.108 16.541 24.732 hybrid contribution 0.504 1.153 0.455 1.338 sum -17.159 -3.955 16.996 24.473 Atomic orbital electron populations 1.23051 0.78406 1.03958 1.01320 1.86081 1.21353 1.26886 1.88767 1.18937 0.92175 0.84204 0.96663 1.21250 1.00006 0.92461 1.08869 1.20911 0.94442 0.97054 0.97439 1.20990 0.93762 0.98092 1.02911 1.18926 0.93016 0.92752 0.98220 1.22453 0.94727 1.05794 0.99244 1.87936 1.01579 1.97652 1.06167 1.23745 0.96921 1.06327 1.01562 1.19394 0.82817 0.78043 0.88920 1.90747 1.62148 1.48309 1.37287 1.48152 1.04417 1.71564 1.08397 1.19393 0.92885 0.97837 0.77164 1.21398 1.39715 0.92246 1.03474 0.92338 1.24919 0.95299 0.97543 0.96223 1.69920 1.40371 1.31373 1.11500 0.86507 0.78347 0.84702 0.77952 1.20658 1.21073 1.19836 1.21330 0.98066 0.93407 0.88184 1.19907 0.98272 1.01553 0.89478 1.29209 0.93603 0.93106 0.94288 1.81326 1.10236 1.08629 1.12007 1.20272 0.91416 0.98169 1.05518 0.92730 0.92579 0.88231 0.85524 0.85558 0.85442 0.88963 0.89074 0.87614 0.87822 0.94524 0.93404 0.92629 0.88513 0.90742 0.87609 0.86316 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.17 10.50 -19.44 -0.20 -3.37 16 3 C 0.13 1.32 6.69 -39.22 -0.26 1.06 16 4 C -0.21 -1.86 9.04 -39.43 -0.36 -2.22 16 5 C -0.08 -0.71 10.04 -39.60 -0.40 -1.11 16 6 C -0.14 -1.35 9.70 -39.56 -0.38 -1.74 16 7 C -0.03 -0.29 5.14 -104.65 -0.54 -0.83 16 8 C -0.07 -0.73 6.07 36.01 0.22 -0.51 16 9 S -0.16 -2.29 20.86 -107.50 -2.24 -4.53 16 10 C -0.13 -1.72 4.98 36.01 0.18 -1.54 16 11 C 0.52 9.61 7.69 -10.98 -0.08 9.53 16 12 O -0.51 -12.02 15.44 5.56 0.09 -11.93 16 13 N -0.59 -10.60 2.46 -175.06 -0.43 -11.03 16 14 C 0.25 5.74 5.16 -5.20 -0.03 5.72 16 15 C -0.53 -14.02 9.39 -34.44 -0.32 -14.35 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.12 1.48 5.17 -4.04 -0.02 1.46 16 24 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 25 C 0.22 2.50 15.44 -20.67 -0.32 2.18 16 26 N -0.44 -6.34 18.55 42.26 0.78 -5.56 16 27 C -0.13 -1.45 9.64 -39.44 -0.38 -1.83 16 28 H 0.05 0.25 7.67 -51.93 -0.40 -0.15 16 29 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.09 0.76 8.08 -51.92 -0.42 0.34 16 35 H 0.09 0.75 8.08 -51.92 -0.42 0.33 16 36 H 0.11 1.15 7.40 -51.92 -0.38 0.76 16 37 H 0.10 0.99 7.18 -51.93 -0.37 0.62 16 38 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 39 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 42 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 43 H 0.11 0.83 7.22 -51.93 -0.37 0.46 16 44 H 0.12 1.18 8.14 -51.92 -0.42 0.75 16 45 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 403.57 15.07 6.08 6.08 Total: -1.00 -34.78 403.57 -8.50 -43.28 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.32 Total: -2.36 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.98 Total: -2.10 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 1.09 Total: -41.24 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.12 Total: -15.31 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.24 Total: -4.53 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.78 -8.50 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064376254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.911 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds