Wall clock time and date at job start Tue Mar 31 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31238 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48497 * 109.47012 * 269.99799 * 3 2 1 5 5 H 1.48499 * 109.47095 * 30.00342 * 3 2 1 6 6 H 1.48505 * 109.46580 * 149.99681 * 3 2 1 7 7 C 1.39163 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99872 * 185.13421 * 7 2 1 9 9 N 1.36358 * 120.00055 * 5.13112 * 7 2 1 10 10 N 1.38417 * 117.05644 * 354.49218 * 9 7 2 11 11 C 1.30166 * 124.61497 * 201.08244 * 10 9 7 12 12 C 1.46347 * 120.33958 * 179.35428 * 11 10 9 13 13 O 1.21728 * 119.99824 * 57.14374 * 12 11 10 14 14 N 1.34775 * 120.00160 * 237.15296 * 12 11 10 15 15 C 1.47020 * 125.64634 * 4.40092 * 14 12 11 16 16 C 1.54316 * 107.27440 * 180.97253 * 15 14 12 17 17 C 1.55150 * 102.86240 * 22.52558 * 16 15 14 18 18 C 1.47420 * 125.65114 * 184.71130 * 14 12 11 19 19 S 1.76665 * 119.32717 * 359.33000 * 11 10 9 20 20 O 1.42102 * 106.68671 * 232.43822 * 19 11 10 21 21 O 1.42096 * 106.66308 * 98.79479 * 19 11 10 22 22 C 1.76524 * 105.46249 * 345.61910 * 19 11 10 23 23 C 1.37691 * 120.56592 * 194.18338 * 22 19 11 24 24 C 1.38426 * 119.88980 * 179.44544 * 23 22 19 25 25 C 1.38334 * 119.90652 * 359.97438 * 24 23 22 26 26 C 1.37939 * 120.36348 * 0.16912 * 25 24 23 27 27 C 1.38791 * 117.05731 * 174.46903 * 9 7 2 28 28 H 0.97002 * 119.99734 * 5.00603 * 1 2 3 29 29 H 1.09004 * 109.88177 * 300.51665 * 15 14 12 30 30 H 1.09002 * 109.88478 * 61.67919 * 15 14 12 31 31 H 1.08999 * 110.92250 * 264.10714 * 16 15 14 32 32 H 1.09004 * 110.58821 * 140.78517 * 16 15 14 33 33 H 1.09011 * 111.00248 * 206.22829 * 17 16 15 34 34 H 1.08998 * 111.00540 * 82.38155 * 17 16 15 35 35 H 1.08996 * 110.36824 * 274.67275 * 18 14 12 36 36 H 1.09004 * 110.36730 * 36.88083 * 18 14 12 37 37 H 1.08003 * 120.06044 * 359.46718 * 23 22 19 38 38 H 1.07999 * 120.05124 * 179.97438 * 24 23 22 39 39 H 1.07995 * 119.82290 * 180.13962 * 25 24 23 40 40 H 1.07995 * 119.95898 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2463 1.6178 0.0000 4 1 2.4939 2.0464 -1.4001 5 1 1.4438 2.6526 0.7001 6 1 3.5439 1.4401 0.7002 7 6 2.0082 -1.2052 -0.0005 8 1 3.0849 -1.2071 0.0832 9 7 1.3305 -2.3837 -0.1067 10 7 -0.0521 -2.3184 -0.0924 11 6 -0.8363 -3.3135 0.2062 12 6 -2.2890 -3.1359 0.2053 13 8 -2.8542 -2.7490 -0.8010 14 7 -3.0009 -3.4007 1.3186 15 6 -2.4410 -3.7842 2.6227 16 6 -3.6279 -4.0084 3.5830 17 6 -4.8054 -4.2980 2.6151 18 6 -4.4705 -3.3601 1.4286 19 16 -0.1292 -4.8808 0.6121 20 8 -0.7605 -5.8417 -0.2230 21 8 -0.1137 -4.9658 2.0304 22 6 1.5550 -4.7862 0.0918 23 6 2.3219 -5.9254 -0.0084 24 6 3.6377 -5.8363 -0.4288 25 6 4.1780 -4.6033 -0.7474 26 6 3.4136 -3.4597 -0.6454 27 6 2.0892 -3.5403 -0.2197 28 1 -0.4850 0.8369 -0.0733 29 1 -1.8640 -4.7035 2.5226 30 1 -1.8051 -2.9846 3.0028 31 1 -3.8252 -3.1137 4.1736 32 1 -3.4409 -4.8654 4.2301 33 1 -5.7593 -4.0288 3.0687 34 1 -4.8049 -5.3415 2.3004 35 1 -4.8071 -2.3453 1.6405 36 1 -4.9299 -3.7275 0.5110 37 1 1.8974 -6.8869 0.2402 38 1 4.2417 -6.7281 -0.5080 39 1 5.2041 -4.5357 -1.0774 40 1 3.8422 -2.5004 -0.8954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065183222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:48 Heat of formation + Delta-G solvation = 18.954852 kcal Electronic energy + Delta-G solvation = -29752.921439 eV Core-core repulsion = 25662.838712 eV Total energy + Delta-G solvation = -4090.082727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.093 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.64674 -39.38204 -37.16293 -36.81512 -36.39522 -35.38837 -33.45519 -32.27960 -31.35054 -30.83865 -29.14826 -28.71462 -25.90232 -24.62889 -22.99306 -22.77915 -21.21365 -20.88442 -19.59154 -19.04597 -18.03401 -17.73525 -17.04474 -16.42795 -16.26112 -15.42112 -15.40150 -15.03199 -14.88676 -14.48403 -14.12257 -13.79076 -13.70072 -13.48327 -13.31040 -13.09594 -12.63545 -12.42311 -12.23492 -12.15753 -11.98795 -11.77274 -11.55460 -11.49215 -11.42863 -11.31474 -11.09173 -10.97921 -10.86958 -10.66697 -10.52550 -10.14150 -10.01068 -9.68951 -9.22538 -9.02922 -8.63935 -8.15572 -7.66854 -6.73163 -4.48592 0.59616 1.07155 1.43696 2.42335 2.73236 2.95992 2.98177 2.99969 3.43763 3.45345 3.60463 3.86169 3.90397 4.00458 4.64031 4.70095 4.82805 4.91243 5.07608 5.17930 5.25683 5.36874 5.51126 5.56298 5.60369 5.65120 5.70505 5.85222 5.91452 6.04982 6.09841 6.12219 6.20092 6.27998 6.36541 6.39673 6.50363 6.70643 6.76891 6.85481 7.17777 7.36280 7.90751 8.10863 8.55169 8.74866 8.99662 10.14073 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.009651 B = 0.006051 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.661880 B = 4625.894905 C = 6764.376184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.039 3.961 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.318 4.318 8 H 0.133 0.867 9 N -0.237 5.237 10 N 0.009 4.991 11 C -0.626 4.626 12 C 0.647 3.353 13 O -0.524 6.524 14 N -0.621 5.621 15 C 0.070 3.930 16 C -0.129 4.129 17 C -0.136 4.136 18 C 0.109 3.891 19 S 2.548 3.452 20 O -0.949 6.949 21 O -0.936 6.936 22 C -0.708 4.708 23 C 0.009 3.991 24 C -0.187 4.187 25 C -0.048 4.048 26 C -0.156 4.156 27 C 0.201 3.799 28 H 0.280 0.720 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -5.561 4.967 7.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.452 4.452 8 H 0.150 0.850 9 N -0.022 5.022 10 N 0.180 4.820 11 C -0.884 4.884 12 C 0.433 3.567 13 O -0.398 6.398 14 N -0.358 5.358 15 C -0.052 4.052 16 C -0.167 4.167 17 C -0.174 4.174 18 C -0.013 4.013 19 S 2.728 3.272 20 O -0.945 6.945 21 O -0.932 6.932 22 C -0.803 4.803 23 C -0.010 4.010 24 C -0.208 4.208 25 C -0.067 4.067 26 C -0.179 4.179 27 C 0.092 3.908 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.342 -5.016 4.590 6.808 hybrid contribution 0.971 0.681 -0.320 1.229 sum 1.313 -4.335 4.270 6.225 Atomic orbital electron populations 1.70113 1.06075 1.28842 1.33968 1.25658 0.95752 1.00342 0.96039 0.85740 0.79348 0.79557 0.79252 1.19321 1.19944 1.18571 1.20207 0.92936 0.80452 1.51558 0.84993 1.45226 0.99661 1.05112 1.52155 1.75704 0.86884 1.19380 1.00051 1.33495 1.03587 1.17746 1.33615 1.15660 0.83183 0.76331 0.81572 1.90729 1.71255 1.45139 1.32636 1.48256 1.07072 1.70451 1.10038 1.22730 0.96763 1.03102 0.82633 1.22618 0.94292 1.02438 0.97308 1.22825 0.98596 1.00179 0.95782 1.22178 0.80403 0.99652 0.99065 1.03020 0.74181 0.74744 0.75261 1.93546 1.74233 1.58618 1.68078 1.93498 1.85873 1.85747 1.28093 1.29377 1.24138 0.99052 1.27744 1.20236 0.93644 0.95136 0.92034 1.20945 0.95491 0.97867 1.06529 1.21108 0.98982 0.92078 0.94546 1.21074 0.92464 0.99873 1.04499 1.18004 0.92434 0.85784 0.94566 0.90780 0.88562 0.90647 0.90653 0.89943 0.89872 0.90481 0.91423 0.90381 0.85489 0.85615 0.85504 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.67 11.09 55.51 0.62 -19.06 16 2 C 0.04 0.91 5.48 -17.46 -0.10 0.81 16 3 Si 0.94 17.44 29.56 -169.99 -5.02 12.42 16 4 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 7 C -0.32 -7.43 9.11 -15.20 -0.14 -7.57 16 8 H 0.13 2.67 5.98 -52.49 -0.31 2.35 16 9 N -0.24 -5.83 3.68 -9.68 -0.04 -5.86 16 10 N 0.01 0.25 8.05 32.68 0.26 0.51 16 11 C -0.63 -15.79 6.24 -15.00 -0.09 -15.88 16 12 C 0.65 16.09 7.51 -13.00 -0.10 16.00 16 13 O -0.52 -14.35 17.40 5.16 0.09 -14.26 16 14 N -0.62 -12.68 3.33 -172.19 -0.57 -13.25 16 15 C 0.07 1.27 5.70 -3.07 -0.02 1.25 16 16 C -0.13 -1.64 6.95 -24.90 -0.17 -1.82 16 17 C -0.14 -1.62 7.08 -24.59 -0.17 -1.79 16 18 C 0.11 1.74 6.89 -2.53 -0.02 1.72 16 19 S 2.55 57.27 4.85 -107.50 -0.52 56.75 16 20 O -0.95 -22.43 17.90 -57.12 -1.02 -23.45 16 21 O -0.94 -20.49 14.31 -57.12 -0.82 -21.31 16 22 C -0.71 -14.96 5.85 -39.46 -0.23 -15.19 16 23 C 0.01 0.16 9.75 -39.71 -0.39 -0.23 16 24 C -0.19 -2.76 10.06 -39.48 -0.40 -3.16 16 25 C -0.05 -0.70 10.02 -39.66 -0.40 -1.10 16 26 C -0.16 -2.81 9.05 -39.28 -0.36 -3.16 16 27 C 0.20 4.40 6.41 -83.98 -0.54 3.87 16 28 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.10 1.83 4.61 -51.93 -0.24 1.59 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 37 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.14 2.31 6.30 -52.49 -0.33 1.98 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -33.09 343.91 -9.20 -42.29 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.24 Total: 6.31 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -3.11 Total: -26.26 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.27 Total: -37.66 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -1.75 Total: -59.02 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.02 Total: 12.42 kcal Atomic # 16 Polarization: 57.27 SS G_CDS: -0.52 Total: 56.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.09 -9.20 -42.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065183222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.243 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds