Wall clock time and date at job start Tue Mar 31 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99569 * 2 1 4 4 H 1.48498 * 109.47194 * 240.00242 * 3 2 1 5 5 H 1.48499 * 109.47286 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46621 * 119.99971 * 3 2 1 7 7 C 1.37875 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99815 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99983 * 359.97438 * 7 2 1 10 10 S 1.81396 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.76197 * 102.99877 * 180.02562 * 10 9 7 12 12 C 1.38765 * 120.09575 * 0.25176 * 11 10 9 13 13 C 1.38209 * 120.00509 * 180.25323 * 12 11 10 14 14 C 1.38402 * 120.18919 * 359.49322 * 13 12 11 15 15 Cl 1.73595 * 119.90641 * 180.23047 * 14 13 12 16 16 C 1.38340 * 120.18761 * 0.25651 * 14 13 12 17 17 C 1.38676 * 119.99293 * 359.97438 * 16 14 13 18 18 N 1.40034 * 120.09109 * 179.97438 * 17 16 14 19 19 C 1.34774 * 120.00186 * 24.82994 * 18 17 16 20 20 O 1.21541 * 120.00175 * 5.53391 * 19 18 17 21 21 C 1.48115 * 119.99847 * 185.52875 * 19 18 17 22 22 C 1.39836 * 120.92539 * 359.72090 * 21 19 18 23 23 C 1.38138 * 118.99780 * 179.72847 * 22 21 19 24 24 N 1.31816 * 120.89916 * 0.55867 * 23 22 21 25 25 C 1.31818 * 122.05298 * 359.71592 * 24 23 22 26 26 C 1.38146 * 120.89778 * 359.97438 * 25 24 23 27 27 H 0.96996 * 120.00217 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46963 * 60.00383 * 9 7 2 29 29 H 1.08994 * 109.47092 * 300.00712 * 9 7 2 30 30 H 1.07997 * 119.99861 * 0.02562 * 12 11 10 31 31 H 1.07996 * 119.90732 * 179.76951 * 13 12 11 32 32 H 1.07998 * 119.99827 * 179.97438 * 16 14 13 33 33 H 0.97000 * 119.99863 * 204.82496 * 18 17 16 34 34 H 1.07998 * 120.49847 * 359.97438 * 22 21 19 35 35 H 1.08000 * 119.54905 * 180.27322 * 23 22 21 36 36 H 1.08006 * 119.55364 * 179.97438 * 25 24 23 37 37 H 1.07999 * 120.49846 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 16 2.4300 -3.8779 -0.0005 11 6 1.3827 -5.2948 -0.0013 12 6 0.0037 -5.1407 -0.0070 13 6 -0.8161 -6.2535 -0.0023 14 6 -0.2658 -7.5234 -0.0025 15 17 -1.3023 -8.9159 -0.0026 16 6 1.1080 -7.6861 -0.0020 17 6 1.9378 -6.5750 -0.0019 18 7 3.3287 -6.7374 -0.0009 19 6 3.8755 -7.8678 -0.4902 20 8 3.1710 -8.7024 -1.0235 21 6 5.3351 -8.0931 -0.3782 22 6 6.1646 -7.1433 0.2262 23 6 7.5196 -7.3968 0.3144 24 7 8.0331 -8.5096 -0.1711 25 6 7.2881 -9.4281 -0.7532 26 6 5.9227 -9.2591 -0.8787 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5568 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 -0.4291 -4.1513 -0.0114 31 1 -1.8892 -6.1317 -0.0030 32 1 1.5342 -8.6785 -0.0018 33 1 3.8985 -6.0362 0.3519 34 1 5.7514 -6.2272 0.6217 35 1 8.1678 -6.6714 0.7834 36 1 7.7513 -10.3249 -1.1373 37 1 5.3185 -10.0157 -1.3572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065453153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:44 Heat of formation + Delta-G solvation = 19.260430 kcal Electronic energy + Delta-G solvation = -23922.982605 eV Core-core repulsion = 20203.215110 eV Total energy + Delta-G solvation = -3719.767495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.044 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16026 -39.93812 -38.39096 -36.41451 -34.97859 -33.39237 -33.06973 -31.61714 -30.83234 -29.59251 -28.75355 -25.37411 -23.90116 -23.57472 -23.03520 -22.29409 -20.76200 -18.88331 -17.85218 -17.19465 -16.47262 -16.36629 -16.10462 -15.86943 -15.56666 -15.31673 -14.85858 -14.64232 -14.25836 -14.09032 -13.97400 -13.64347 -13.47775 -13.40503 -12.66426 -12.49842 -12.29022 -12.07989 -11.92951 -11.66060 -11.01075 -10.95444 -10.90678 -10.53591 -10.39239 -10.29467 -10.19087 -9.84499 -9.80400 -9.57569 -9.35995 -9.23264 -8.74295 -8.33563 -6.81023 -6.38399 -4.45404 0.28074 0.72156 1.15872 1.36281 2.07890 2.21182 2.57163 2.76545 3.16410 3.21116 3.23032 3.38169 3.48626 3.72372 4.06306 4.14780 4.19760 4.40328 4.57318 4.69807 4.94013 4.99463 5.11505 5.16385 5.35102 5.36640 5.41180 5.45606 5.66287 5.80315 5.95140 6.20690 6.24885 6.31659 6.35545 6.78485 6.81063 6.84447 7.13362 7.52891 7.53104 7.74629 7.75718 8.55071 9.19663 10.72515 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.007543 B = 0.003554 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3711.221598 B = 7877.003701 C =11471.130067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.069 0.931 9 C 0.077 3.923 10 S -0.158 6.158 11 C -0.091 4.091 12 C -0.102 4.102 13 C -0.103 4.103 14 C -0.034 4.034 15 Cl -0.077 7.077 16 C -0.107 4.107 17 C 0.159 3.841 18 N -0.649 5.649 19 C 0.558 3.442 20 O -0.509 6.509 21 C -0.086 4.086 22 C -0.139 4.139 23 C 0.099 3.901 24 N -0.469 5.469 25 C 0.095 3.905 26 C -0.113 4.113 27 H 0.269 0.731 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.155 0.845 33 H 0.417 0.583 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.325 -16.117 1.139 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.087 0.913 9 C -0.070 4.070 10 S 0.089 5.911 11 C -0.207 4.207 12 C -0.127 4.127 13 C -0.124 4.124 14 C -0.065 4.065 15 Cl -0.048 7.048 16 C -0.129 4.129 17 C 0.058 3.942 18 N -0.294 5.294 19 C 0.346 3.654 20 O -0.384 6.384 21 C -0.097 4.097 22 C -0.159 4.159 23 C -0.057 4.057 24 N -0.178 5.178 25 C -0.062 4.062 26 C -0.134 4.134 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.165 0.835 31 H 0.152 0.848 32 H 0.172 0.828 33 H 0.256 0.744 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.182 0.818 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.776 -16.651 0.841 18.841 hybrid contribution -1.833 1.311 0.084 2.255 sum 6.943 -15.341 0.924 16.864 Atomic orbital electron populations 1.69918 1.06161 1.27905 1.48444 1.24941 0.95011 0.99345 0.94179 0.86369 0.79435 0.81592 0.79058 1.19780 1.20891 1.19776 1.20531 0.93430 0.88398 1.53958 0.91332 1.21433 0.94067 0.90320 1.01150 1.85073 1.18205 0.97930 1.89899 1.21933 0.97697 0.96360 1.04683 1.21196 0.91218 0.99817 1.00501 1.20960 1.00520 0.90103 1.00831 1.20551 0.90684 0.87903 1.07313 1.98340 1.67096 1.42226 1.97119 1.21014 0.90917 0.99448 1.01533 1.16913 0.82067 0.91742 1.03517 1.43322 1.05734 1.19890 1.60442 1.18271 0.87412 0.81679 0.78078 1.90765 1.62024 1.44133 1.41517 1.20248 0.92962 0.96271 1.00234 1.22469 0.95426 0.99553 0.98452 1.22814 0.92701 0.94374 0.95845 1.67586 1.40656 1.01934 1.07654 1.22843 0.90135 0.97925 0.95253 1.22337 0.96470 0.96982 0.97584 0.92100 0.93464 0.93481 0.83540 0.84776 0.82768 0.74417 0.83929 0.81735 0.81844 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.04 13.29 55.43 0.74 -23.30 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 19.94 29.54 -169.99 -5.02 14.92 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.52 -13.43 9.13 -34.44 -0.31 -13.75 16 8 H 0.07 1.73 7.71 -52.49 -0.40 1.32 16 9 C 0.08 1.79 4.09 36.01 0.15 1.93 16 10 S -0.16 -3.00 20.55 -107.50 -2.21 -5.21 16 11 C -0.09 -1.58 6.12 -38.90 -0.24 -1.81 16 12 C -0.10 -1.72 9.36 -39.40 -0.37 -2.08 16 13 C -0.10 -1.53 9.82 -39.53 -0.39 -1.92 16 14 C -0.03 -0.50 6.32 -39.48 -0.25 -0.75 16 15 Cl -0.08 -1.01 28.95 -51.86 -1.50 -2.51 16 16 C -0.11 -1.66 8.50 -39.38 -0.33 -2.00 16 17 C 0.16 2.53 6.44 -83.47 -0.54 1.99 16 18 N -0.65 -8.86 5.12 -10.49 -0.05 -8.92 16 19 C 0.56 7.42 7.60 -12.21 -0.09 7.33 16 20 O -0.51 -7.95 13.61 5.33 0.07 -7.87 16 21 C -0.09 -0.92 5.91 -104.65 -0.62 -1.54 16 22 C -0.14 -1.25 9.61 -39.02 -0.38 -1.62 16 23 C 0.10 0.85 11.17 -17.60 -0.20 0.66 16 24 N -0.47 -4.60 10.34 -13.31 -0.14 -4.73 16 25 C 0.10 0.81 11.17 -17.59 -0.20 0.61 16 26 C -0.11 -1.06 9.68 -39.02 -0.38 -1.44 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.05 1.15 7.74 -51.92 -0.40 0.75 16 29 H 0.05 1.13 7.76 -51.93 -0.40 0.73 16 30 H 0.15 2.57 5.88 -52.49 -0.31 2.26 16 31 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.15 2.40 5.78 -52.49 -0.30 2.10 16 33 H 0.42 5.05 5.80 -40.82 -0.24 4.82 16 34 H 0.14 1.05 6.55 -52.49 -0.34 0.71 16 35 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.15 1.28 7.74 -52.49 -0.41 0.87 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -29.04 350.55 -10.28 -39.32 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.21 Total: 5.69 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -4.24 Total: -12.66 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.55 Total: -36.95 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.07 Total: -7.87 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.21 Total: -5.21 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.04 -10.28 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065453153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.579 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds