Wall clock time and date at job start Tue Mar 31 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99658 * 2 1 4 4 H 1.48494 * 109.47243 * 239.99816 * 3 2 1 5 5 H 1.48501 * 109.46784 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46976 * 119.99921 * 3 2 1 7 7 C 1.37877 * 120.00540 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00199 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99740 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47087 * 179.97438 * 9 7 2 11 11 C 1.76196 * 102.99873 * 180.02562 * 10 9 7 12 12 C 1.38765 * 120.09790 * 0.02562 * 11 10 9 13 13 C 1.38196 * 120.00771 * 179.97438 * 12 11 10 14 14 C 1.38412 * 120.19204 * 359.97438 * 13 12 11 15 15 Cl 1.73602 * 119.90532 * 179.97438 * 14 13 12 16 16 C 1.38331 * 120.18237 * 359.76918 * 14 13 12 17 17 C 1.38675 * 119.99570 * 0.50786 * 16 14 13 18 18 N 1.40037 * 120.09513 * 179.74601 * 17 16 14 19 19 C 1.34781 * 119.99840 * 34.68796 * 18 17 16 20 20 O 1.21538 * 119.99807 * 355.51867 * 19 18 17 21 21 C 1.48105 * 119.99906 * 175.51293 * 19 18 17 22 22 C 1.39454 * 120.09981 * 179.97438 * 21 19 18 23 23 N 1.32082 * 119.87202 * 179.74785 * 22 21 19 24 24 C 1.32142 * 120.06958 * 0.53012 * 23 22 21 25 25 C 1.38723 * 120.19926 * 359.49365 * 24 23 22 26 26 N 1.31802 * 120.13156 * 0.22897 * 25 24 23 27 27 H 0.96996 * 120.00827 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47405 * 59.99833 * 9 7 2 29 29 H 1.09002 * 109.47101 * 300.00185 * 9 7 2 30 30 H 1.08001 * 119.99624 * 0.02562 * 12 11 10 31 31 H 1.07999 * 119.90864 * 180.02562 * 13 12 11 32 32 H 1.08004 * 119.99885 * 180.25439 * 16 14 13 33 33 H 0.96996 * 119.99955 * 214.69231 * 18 17 16 34 34 H 1.08007 * 120.06659 * 0.02562 * 22 21 19 35 35 H 1.07995 * 119.89964 * 179.76641 * 24 23 22 36 36 H 1.08004 * 119.93436 * 180.25469 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 16 2.4301 -3.8778 0.0005 11 6 1.3828 -5.2948 -0.0002 12 6 0.0037 -5.1408 -0.0012 13 6 -0.8160 -6.2534 -0.0023 14 6 -0.2657 -7.5234 -0.0030 15 17 -1.3023 -8.9159 -0.0038 16 6 1.1080 -7.6861 -0.0075 17 6 1.9378 -6.5750 -0.0005 18 7 3.3287 -6.7373 0.0004 19 6 3.8877 -7.7652 -0.6686 20 8 3.1819 -8.5970 -1.2044 21 6 5.3619 -7.8809 -0.7510 22 6 5.9424 -8.9439 -1.4422 23 7 7.2576 -9.0400 -1.5170 24 6 8.0220 -8.1364 -0.9292 25 6 7.4477 -7.0781 -0.2404 26 7 6.1361 -6.9715 -0.1653 27 1 -0.4851 0.8399 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 -0.4291 -4.1513 -0.0019 31 1 -1.8891 -6.1317 -0.0035 32 1 1.5343 -8.6784 -0.0122 33 1 3.8898 -6.1100 0.4826 34 1 5.3178 -9.6847 -1.9192 35 1 9.0971 -8.2197 -0.9889 36 1 8.0765 -6.3398 0.2350 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065453156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:38 Heat of formation + Delta-G solvation = 32.826450 kcal Electronic energy + Delta-G solvation = -24070.641281 eV Core-core repulsion = 20286.036141 eV Total energy + Delta-G solvation = -3784.605139 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 349.039 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66381 -40.27448 -38.40805 -36.37713 -35.12897 -34.47039 -33.33263 -32.18879 -30.79364 -29.59497 -28.70462 -25.93289 -24.95579 -23.67247 -22.95349 -22.47069 -20.88067 -18.74531 -18.22995 -17.54122 -17.14404 -16.77108 -16.38405 -15.89479 -15.72724 -15.30419 -15.02746 -14.78738 -14.48847 -14.16280 -13.66714 -13.45983 -13.41851 -13.23442 -12.61478 -12.46112 -12.24125 -12.10545 -11.86013 -11.71794 -11.58727 -10.97773 -10.93733 -10.87465 -10.47532 -10.35955 -10.13134 -9.88288 -9.79540 -9.53674 -9.26513 -9.18420 -8.70589 -8.34542 -6.74805 -6.34572 -4.41092 -0.04993 0.62505 1.17754 1.38000 2.14122 2.26309 2.41107 2.78380 3.18985 3.23293 3.25870 3.38350 3.43920 3.58499 3.74078 3.77163 4.01019 4.22813 4.41310 4.71148 4.78008 4.99289 5.03196 5.10420 5.18322 5.43947 5.47338 5.82311 5.85172 6.01114 6.27173 6.36675 6.38524 6.68061 6.83446 6.85618 6.88034 7.11589 7.32317 7.57309 7.79394 7.82952 8.59530 9.23603 10.76452 Molecular weight = 349.04amu Principal moments of inertia in cm(-1) A = 0.007316 B = 0.003681 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3826.535748 B = 7605.377115 C =11293.520522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.068 0.932 9 C 0.071 3.929 10 S -0.145 6.145 11 C -0.085 4.085 12 C -0.107 4.107 13 C -0.098 4.098 14 C -0.039 4.039 15 Cl -0.077 7.077 16 C -0.095 4.095 17 C 0.151 3.849 18 N -0.638 5.638 19 C 0.577 3.423 20 O -0.510 6.510 21 C 0.031 3.969 22 C 0.112 3.888 23 N -0.440 5.440 24 C 0.074 3.926 25 C 0.054 3.946 26 N -0.407 5.407 27 H 0.269 0.731 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.426 0.574 34 H 0.185 0.815 35 H 0.178 0.822 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.388 -15.940 0.697 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.086 0.914 9 C -0.075 4.075 10 S 0.103 5.897 11 C -0.201 4.201 12 C -0.132 4.132 13 C -0.119 4.119 14 C -0.069 4.069 15 Cl -0.049 7.049 16 C -0.117 4.117 17 C 0.050 3.950 18 N -0.283 5.283 19 C 0.362 3.638 20 O -0.385 6.385 21 C -0.110 4.110 22 C -0.047 4.047 23 N -0.154 5.154 24 C -0.087 4.087 25 C -0.108 4.108 26 N -0.125 5.125 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.164 0.836 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.265 0.735 34 H 0.202 0.798 35 H 0.195 0.805 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 9.907 -16.325 0.285 19.098 hybrid contribution -0.749 1.148 0.230 1.390 sum 9.157 -15.177 0.515 17.733 Atomic orbital electron populations 1.69917 1.06150 1.27835 1.48603 1.24937 0.94998 0.99315 0.94236 0.86377 0.79433 0.81643 0.79040 1.19817 1.20911 1.19787 1.20536 0.93431 0.88425 1.53747 0.91353 1.21445 0.94315 0.90667 1.01092 1.85329 1.17473 0.97476 1.89381 1.22074 0.97675 0.96685 1.03633 1.21204 0.91245 0.99821 1.00932 1.20966 1.00498 0.90102 1.00318 1.20538 0.90649 0.87900 1.07862 1.98339 1.67133 1.42241 1.97157 1.20904 0.90896 0.99158 1.00789 1.16899 0.82143 0.91566 1.04390 1.43191 1.05605 1.29380 1.50110 1.17695 0.85836 0.81726 0.78568 1.90814 1.61550 1.40269 1.45867 1.22019 0.94902 0.94687 0.99362 1.23853 0.91582 0.96010 0.93292 1.68661 1.05063 1.25707 1.15960 1.24169 1.02118 0.90497 0.91960 1.23927 0.91225 0.98367 0.97317 1.68389 1.06319 1.23792 1.13970 0.92151 0.93533 0.93510 0.83551 0.84779 0.83292 0.73469 0.79847 0.80506 0.80214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.52 -13.69 9.13 -34.44 -0.31 -14.01 16 8 H 0.07 1.77 7.71 -52.49 -0.40 1.37 16 9 C 0.07 1.70 4.09 36.01 0.15 1.85 16 10 S -0.14 -2.89 20.73 -107.50 -2.23 -5.12 16 11 C -0.08 -1.52 6.12 -38.90 -0.24 -1.76 16 12 C -0.11 -1.83 9.36 -39.40 -0.37 -2.20 16 13 C -0.10 -1.47 9.82 -39.53 -0.39 -1.86 16 14 C -0.04 -0.58 6.32 -39.48 -0.25 -0.83 16 15 Cl -0.08 -1.02 28.95 -51.86 -1.50 -2.52 16 16 C -0.10 -1.49 8.48 -39.39 -0.33 -1.83 16 17 C 0.15 2.49 6.32 -83.46 -0.53 1.96 16 18 N -0.64 -9.49 5.00 -10.49 -0.05 -9.54 16 19 C 0.58 8.15 7.66 -12.21 -0.09 8.05 16 20 O -0.51 -7.98 13.76 5.33 0.07 -7.91 16 21 C 0.03 0.37 6.75 -82.85 -0.56 -0.19 16 22 C 0.11 1.17 10.77 -16.99 -0.18 0.99 16 23 N -0.44 -4.22 10.49 -12.71 -0.13 -4.35 16 24 C 0.07 0.51 11.23 -17.24 -0.19 0.31 16 25 C 0.05 0.41 11.22 -17.39 -0.20 0.21 16 26 N -0.41 -4.49 9.72 -9.62 -0.09 -4.58 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.05 1.16 7.75 -51.92 -0.40 0.76 16 29 H 0.05 1.15 7.75 -51.92 -0.40 0.75 16 30 H 0.15 2.63 5.88 -52.49 -0.31 2.32 16 31 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.15 2.30 6.19 -52.48 -0.33 1.97 16 33 H 0.43 6.10 7.33 -40.82 -0.30 5.80 16 34 H 0.18 1.70 7.65 -52.48 -0.40 1.30 16 35 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -29.61 348.26 -9.51 -39.12 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -2.95 Total: 5.60 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -3.59 Total: -7.53 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.46 Total: -42.12 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.07 Total: -7.91 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -2.23 Total: -5.12 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.61 -9.51 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065453156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.947 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds