Wall clock time and date at job start Tue Mar 31 2020 06:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38036 * 120.52863 * 2 1 4 4 C 1.39196 * 120.34358 * 359.97438 * 3 2 1 5 5 C 1.37746 * 119.83264 * 180.27629 * 4 3 2 6 6 C 1.38901 * 120.51119 * 0.02562 * 5 4 3 7 7 C 1.36392 * 120.67182 * 359.97438 * 6 5 4 8 8 C 1.40359 * 119.97432 * 359.97438 * 7 6 5 9 9 N 1.34682 * 120.09339 * 180.02562 * 8 7 6 10 10 C 1.30215 * 121.06040 * 180.02562 * 9 8 7 11 11 C 1.50703 * 119.88106 * 180.02562 * 10 9 8 12 12 N 1.46501 * 109.46793 * 0.02562 * 11 10 9 13 13 C 1.36936 * 120.00029 * 90.00353 * 12 11 10 14 14 H 1.07999 * 119.99715 * 172.41541 * 13 12 11 15 15 C 1.38816 * 120.00251 * 352.40378 * 13 12 11 16 16 N 1.31622 * 119.99829 * 334.90824 * 15 13 12 17 17 Si 1.86799 * 119.99977 * 154.89985 * 15 13 12 18 18 H 1.48500 * 109.47070 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46656 * 120.00700 * 17 15 13 20 20 H 1.48501 * 109.47160 * 240.00493 * 17 15 13 21 21 C 1.46502 * 119.99883 * 269.99640 * 12 11 10 22 22 C 1.50697 * 109.47072 * 87.52349 * 21 12 11 23 23 C 1.38234 * 120.00010 * 262.22972 * 22 21 12 24 24 C 1.38233 * 120.00131 * 179.76302 * 23 22 21 25 25 C 1.38236 * 119.99585 * 0.51480 * 24 23 22 26 26 C 1.38229 * 120.00288 * 359.74154 * 25 24 23 27 27 C 1.38231 * 120.00162 * 359.97438 * 26 25 24 28 28 C 1.35111 * 120.52297 * 179.70607 * 2 1 3 29 29 O 1.21780 * 120.39890 * 0.02562 * 28 2 1 30 30 H 1.09000 * 109.46676 * 89.99726 * 1 2 3 31 31 H 1.08991 * 109.47465 * 210.00026 * 1 2 3 32 32 H 1.08996 * 109.46641 * 330.00248 * 1 2 3 33 33 H 1.07996 * 120.07897 * 0.29353 * 4 3 2 34 34 H 1.08005 * 119.74478 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.66166 * 179.97438 * 6 5 4 36 36 H 1.08007 * 120.01451 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46630 * 120.00159 * 11 10 9 38 38 H 1.08992 * 109.47160 * 240.00299 * 11 10 9 39 39 H 0.96996 * 119.99575 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.47057 * 207.52421 * 21 12 11 41 41 H 1.08998 * 109.47121 * 327.52147 * 21 12 11 42 42 H 1.08006 * 119.99974 * 0.02562 * 23 22 21 43 43 H 1.08003 * 120.00105 * 180.22536 * 24 23 22 44 44 H 1.08005 * 119.99492 * 179.72180 * 25 24 23 45 45 H 1.07998 * 120.00175 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00576 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1662 1.1890 0.0000 4 6 1.4887 2.4049 -0.0005 5 6 2.1989 3.5852 -0.0063 6 6 3.5878 3.5723 -0.0121 7 6 4.2728 2.3929 -0.0117 8 6 3.5735 1.1759 -0.0048 9 7 4.2474 0.0098 -0.0039 10 6 3.6178 -1.1300 0.0020 11 6 4.3986 -2.4190 0.0034 12 7 5.8329 -2.1210 -0.0018 13 6 6.5069 -1.9783 1.1816 14 1 7.5825 -1.8809 1.1821 15 6 5.8077 -1.9585 2.3806 16 7 4.5459 -1.5846 2.4005 17 14 6.6576 -2.4627 3.9658 18 1 8.0650 -2.8370 3.6756 19 1 6.6349 -1.3270 4.9224 20 1 5.9484 -3.6245 4.5598 21 6 6.5462 -1.9759 -1.2732 22 6 6.4499 -0.5473 -1.7430 23 6 5.4968 -0.1901 -2.6783 24 6 5.4052 1.1214 -3.1056 25 6 6.2738 2.0734 -2.6055 26 6 7.2304 1.7151 -1.6742 27 6 7.3181 0.4049 -1.2425 28 6 2.1512 -1.1639 0.0060 29 8 1.5594 -2.2282 0.0110 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3632 0.8900 0.5138 33 1 0.4089 2.4229 0.0038 34 1 1.6717 4.5278 -0.0071 35 1 4.1309 4.5059 -0.0170 36 1 5.3528 2.3953 -0.0158 37 1 4.1503 -2.9931 0.8962 38 1 4.1443 -2.9988 -0.8838 39 1 4.0572 -1.5711 3.2383 40 1 7.5940 -2.2430 -1.1346 41 1 6.0990 -2.6343 -2.0179 42 1 4.8209 -0.9348 -3.0721 43 1 4.6582 1.4012 -3.8337 44 1 6.2052 3.0972 -2.9428 45 1 7.9092 2.4589 -1.2838 46 1 8.0657 0.1248 -0.5152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065464544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:19 Heat of formation + Delta-G solvation = 95.588529 kcal Electronic energy + Delta-G solvation = -32517.005612 eV Core-core repulsion = 28566.468209 eV Total energy + Delta-G solvation = -3950.537404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.90537 -38.55054 -38.12164 -36.35576 -35.30756 -34.73199 -31.98277 -30.48217 -30.15930 -29.92352 -29.17560 -27.70561 -26.65688 -25.50803 -23.13113 -22.84211 -21.84543 -21.51208 -21.24927 -20.05878 -18.33873 -17.74257 -16.84675 -16.36692 -16.03429 -15.65152 -15.00743 -14.77992 -14.50816 -14.39235 -14.31074 -14.17495 -13.79521 -13.72381 -13.21946 -13.00251 -12.79811 -12.75732 -12.67850 -12.27647 -12.08223 -11.82092 -11.45716 -11.40429 -11.29180 -11.23026 -10.90308 -10.72272 -10.53426 -10.34020 -10.31873 -10.19892 -10.12932 -10.01536 -9.83150 -8.58941 -8.24988 -8.17093 -8.10579 -7.83179 -7.19204 -7.03813 -5.84498 -3.09963 1.08074 1.63986 2.13513 2.17666 2.66351 3.00169 3.38167 3.47289 3.48155 3.64407 4.40558 4.61302 4.66288 4.76872 4.97151 5.12467 5.20364 5.26551 5.34572 5.43647 5.49046 5.50444 5.55045 5.60588 5.67494 5.69523 5.77036 5.85145 6.00298 6.11427 6.15967 6.23946 6.28584 6.35604 6.48339 6.55283 6.66256 6.76858 6.79139 6.81392 6.82075 6.93072 7.16819 7.17696 7.22057 7.40564 7.45669 7.50793 7.73704 7.78534 8.19857 8.40441 8.97096 9.12525 9.76711 10.20048 11.21938 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.008525 B = 0.006502 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.645202 B = 4305.403755 C = 5640.340198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.523 5.523 3 C 0.114 3.886 4 C -0.162 4.162 5 C -0.096 4.096 6 C -0.151 4.151 7 C -0.042 4.042 8 C 0.076 3.924 9 N -0.373 5.373 10 C 0.184 3.816 11 C 0.229 3.771 12 N -0.563 5.563 13 C -0.232 4.232 14 H 0.079 0.921 15 C 0.002 3.998 16 N -0.897 5.897 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.291 1.291 21 C 0.176 3.824 22 C -0.056 4.056 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.136 4.136 26 C -0.126 4.126 27 C -0.089 4.089 28 C 0.496 3.504 29 O -0.534 6.534 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.043 0.957 39 H 0.251 0.749 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 8.235 -8.363 12.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.243 5.243 3 C 0.012 3.988 4 C -0.183 4.183 5 C -0.115 4.115 6 C -0.171 4.171 7 C -0.061 4.061 8 C -0.036 4.036 9 N -0.085 5.085 10 C 0.003 3.997 11 C 0.101 3.899 12 N -0.279 5.279 13 C -0.361 4.361 14 H 0.097 0.903 15 C -0.196 4.196 16 N -0.542 5.542 17 Si 0.730 3.270 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.217 1.217 21 C 0.049 3.951 22 C -0.060 4.060 23 C -0.133 4.133 24 C -0.141 4.141 25 C -0.155 4.155 26 C -0.145 4.145 27 C -0.108 4.108 28 C 0.287 3.713 29 O -0.408 6.408 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.913 7.755 -8.182 11.644 hybrid contribution -1.089 0.487 1.343 1.797 sum -4.003 8.242 -6.839 11.433 Atomic orbital electron populations 1.21886 0.78729 1.04012 1.02591 1.45621 1.07557 1.05795 1.65286 1.18985 0.92605 0.86022 1.01227 1.20655 0.99326 0.90885 1.07472 1.20856 0.94185 0.96919 0.99571 1.20630 0.94065 0.97874 1.04549 1.20780 1.00459 0.89667 0.95188 1.18687 0.86856 0.94467 1.03583 1.68014 1.36351 0.95685 1.08414 1.25767 0.85860 0.97599 0.90483 1.19837 0.81308 0.88384 1.00364 1.44341 1.03756 1.78928 1.00920 1.19268 0.90925 1.43141 0.82786 0.90306 1.24636 0.96143 1.01216 0.97557 1.69893 1.09970 1.48973 1.25380 0.86254 0.78871 0.78069 0.83778 1.20408 1.22335 1.21735 1.20042 0.97187 0.89835 0.88010 1.20826 0.93410 0.99090 0.92628 1.20795 0.98488 0.95590 0.98399 1.20812 0.99019 0.93692 1.00549 1.20743 0.97228 0.98189 0.99321 1.20927 0.98890 0.96254 0.98385 1.20811 0.99151 0.92581 0.98222 1.20639 0.90940 0.82659 0.77019 1.90763 1.71365 1.28645 1.50043 0.91710 0.89515 0.90437 0.86026 0.86234 0.86219 0.84805 0.87114 0.93946 0.93804 0.92097 0.93480 0.88159 0.88154 0.87872 0.87632 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 9.95 59.85 0.60 1.59 16 2 N -0.52 -9.86 3.06 -122.06 -0.37 -10.23 16 3 C 0.11 2.10 6.52 -83.77 -0.55 1.55 16 4 C -0.16 -2.41 9.21 -39.41 -0.36 -2.77 16 5 C -0.10 -1.29 10.02 -39.52 -0.40 -1.69 16 6 C -0.15 -2.19 9.96 -40.00 -0.40 -2.58 16 7 C -0.04 -0.74 9.46 -39.45 -0.37 -1.11 16 8 C 0.08 1.52 6.57 -84.88 -0.56 0.96 16 9 N -0.37 -8.16 6.63 -5.57 -0.04 -8.20 16 10 C 0.18 4.17 4.99 -79.86 -0.40 3.77 16 11 C 0.23 5.25 5.02 -5.19 -0.03 5.23 16 12 N -0.56 -12.59 2.03 -175.98 -0.36 -12.95 16 13 C -0.23 -5.72 9.70 -15.06 -0.15 -5.86 16 14 H 0.08 1.92 7.91 -52.49 -0.42 1.51 16 15 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 16 N -0.90 -24.12 8.96 55.49 0.50 -23.62 16 17 Si 0.90 21.06 29.62 -169.99 -5.04 16.03 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.18 3.31 5.84 -5.19 -0.03 3.28 16 22 C -0.06 -1.02 3.94 -104.62 -0.41 -1.43 16 23 C -0.11 -1.96 8.66 -39.58 -0.34 -2.31 16 24 C -0.12 -1.95 10.05 -39.58 -0.40 -2.34 16 25 C -0.14 -2.04 9.27 -39.59 -0.37 -2.41 16 26 C -0.13 -1.98 8.83 -39.59 -0.35 -2.33 16 27 C -0.09 -1.57 9.73 -39.58 -0.39 -1.96 16 28 C 0.50 10.95 7.62 -12.70 -0.10 10.85 16 29 O -0.53 -12.52 16.34 5.12 0.08 -12.43 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.29 7.47 -51.93 -0.39 0.90 16 32 H 0.08 0.90 6.24 -51.93 -0.32 0.58 16 33 H 0.12 1.47 6.19 -52.49 -0.32 1.14 16 34 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.13 2.45 6.47 -52.48 -0.34 2.11 16 37 H 0.11 2.86 6.23 -51.93 -0.32 2.54 16 38 H 0.04 0.90 7.92 -51.93 -0.41 0.48 16 39 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.06 1.10 7.98 -51.92 -0.41 0.68 16 41 H 0.05 0.81 7.81 -51.93 -0.41 0.41 16 42 H 0.10 1.71 8.05 -52.48 -0.42 1.28 16 43 H 0.10 1.45 8.06 -52.48 -0.42 1.03 16 44 H 0.10 1.33 8.06 -52.48 -0.42 0.91 16 45 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -29.28 375.31 -10.51 -39.79 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.86 Total: 5.57 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -5.08 Total: 0.39 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.27 Total: -55.00 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.04 Total: 16.03 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.28 -10.51 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065464544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.378 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds