Wall clock time and date at job start Tue Mar 31 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.38109 * 110.99596 * 2 1 4 4 N 1.32867 * 120.80952 * 249.31509 * 3 2 1 5 5 C 1.32118 * 121.19252 * 179.97438 * 4 3 2 6 6 N 1.31509 * 122.64754 * 359.97438 * 5 4 3 7 7 C 1.33202 * 120.68131 * 359.71002 * 6 5 4 8 8 C 1.40813 * 120.81507 * 69.29701 * 3 2 1 9 9 C 1.41166 * 134.69937 * 0.02562 * 8 3 2 10 10 N 1.30249 * 108.47083 * 179.97438 * 9 8 3 11 11 N 1.36316 * 134.61342 * 179.54184 * 7 6 5 12 12 C 1.46495 * 125.87275 * 0.78628 * 11 7 6 13 13 C 1.50708 * 109.47055 * 269.71552 * 12 11 7 14 14 H 1.07998 * 120.00112 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99976 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99780 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99781 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47176 * 90.00515 * 17 15 13 19 19 H 1.48501 * 109.46916 * 210.00080 * 17 15 13 20 20 H 1.48501 * 109.47486 * 330.00070 * 17 15 13 21 21 C 1.46900 * 110.99987 * 236.04654 * 2 1 3 22 22 H 1.08996 * 110.27191 * 172.60084 * 21 2 1 23 23 C 1.54346 * 110.30227 * 50.41945 * 21 2 1 24 24 C 1.54347 * 102.39358 * 267.42058 * 23 21 2 25 25 C 1.51366 * 105.16971 * 333.65434 * 24 23 21 26 26 C 1.38496 * 130.38887 * 197.17388 * 25 24 23 27 27 C 1.38098 * 120.21713 * 180.02562 * 26 25 24 28 28 C 1.38250 * 119.93490 * 0.02562 * 27 26 25 29 29 C 1.38106 * 119.93734 * 359.97438 * 28 27 26 30 30 C 1.38215 * 109.76231 * 17.19304 * 25 24 23 31 31 H 1.08992 * 109.47251 * 54.29153 * 1 2 3 32 32 H 1.09000 * 109.47253 * 174.29507 * 1 2 3 33 33 H 1.09003 * 109.46848 * 294.28955 * 1 2 3 34 34 H 1.07998 * 118.68074 * 180.02562 * 5 4 3 35 35 H 1.08006 * 125.76367 * 0.02562 * 9 8 3 36 36 H 1.08998 * 109.47437 * 29.71406 * 12 11 7 37 37 H 1.08999 * 109.47080 * 149.71918 * 12 11 7 38 38 H 0.96998 * 119.99656 * 180.02562 * 16 15 13 39 39 H 1.08995 * 110.82539 * 25.64802 * 23 21 2 40 40 H 1.08998 * 110.82342 * 149.19589 * 23 21 2 41 41 H 1.09001 * 110.30572 * 214.72679 * 24 23 21 42 42 H 1.08998 * 110.38654 * 92.62080 * 24 23 21 43 43 H 1.08000 * 119.89309 * 0.03133 * 26 25 24 44 44 H 1.08000 * 120.03885 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.03513 * 179.97438 * 28 27 26 46 46 H 1.07998 * 119.89454 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9639 1.2894 0.0000 4 7 2.5841 1.7803 -1.0676 5 6 3.0599 3.0128 -1.0760 6 7 2.9523 3.8219 -0.0449 7 6 2.3415 3.4245 1.0701 8 6 1.8232 2.1160 1.1312 9 6 1.2460 1.9593 2.4099 10 7 1.4040 3.0693 3.0728 11 7 2.0809 4.0021 2.2770 12 6 2.4433 5.3654 2.6723 13 6 3.8088 5.3573 3.3100 14 1 4.3521 4.4294 3.4110 15 6 4.3645 6.5345 3.7643 16 7 3.7027 7.6644 3.6417 17 14 6.0567 6.5243 4.5553 18 1 7.0925 6.7284 3.5110 19 1 6.1415 7.6174 5.5569 20 1 6.2813 5.2190 5.2270 21 6 1.9955 -0.7660 -1.1376 22 1 3.0774 -0.6507 -1.2022 23 6 1.3263 -0.3044 -2.4496 24 6 0.1359 -1.2788 -2.5750 25 6 0.5620 -2.5232 -1.8259 26 6 0.0547 -3.8113 -1.8638 27 6 0.6127 -4.8014 -1.0793 28 6 1.6809 -4.5066 -0.2527 29 6 2.1883 -3.2227 -0.2134 30 6 1.6303 -2.2286 -0.9999 31 1 -0.3633 0.5998 -0.8344 32 1 -0.3634 -1.0226 -0.1022 33 1 -0.3633 0.4227 0.9367 34 1 3.5566 3.3706 -1.9658 35 1 0.7568 1.0691 2.7769 36 1 2.4574 6.0075 1.7916 37 1 1.7113 5.7435 3.3860 38 1 4.0938 8.4926 3.9610 39 1 0.9774 0.7248 -2.3654 40 1 2.0085 -0.4156 -3.2925 41 1 -0.0519 -1.5137 -3.6227 42 1 -0.7559 -0.8494 -2.1186 43 1 -0.7799 -4.0423 -2.5091 44 1 0.2146 -5.8048 -1.1108 45 1 2.1183 -5.2796 0.3619 46 1 3.0230 -2.9933 0.4323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:24 Heat of formation + Delta-G solvation = 165.944586 kcal Electronic energy + Delta-G solvation = -30116.565122 eV Core-core repulsion = 26201.371337 eV Total energy + Delta-G solvation = -3915.193785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.160 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.80220 -40.78733 -38.73205 -37.43109 -34.74188 -33.70434 -32.32574 -31.50908 -31.38088 -29.72647 -29.03639 -28.03472 -27.20908 -25.55170 -23.77096 -23.28934 -22.82895 -22.41273 -21.12000 -20.65795 -19.72404 -17.88703 -17.41674 -16.72835 -16.65441 -16.31321 -15.81073 -15.36482 -15.27833 -15.09238 -14.67006 -14.33036 -14.23943 -14.01601 -13.52571 -13.47565 -13.25020 -13.07764 -12.92735 -12.56826 -12.35725 -12.20742 -12.03691 -11.71931 -11.54054 -11.38667 -11.18591 -11.13583 -11.03887 -10.92025 -10.82964 -10.72033 -10.30614 -10.21459 -9.80179 -9.27584 -9.05107 -8.86705 -8.72238 -8.62532 -8.38024 -7.92209 -6.24971 -4.31643 0.97719 1.09640 1.18717 1.71055 2.88226 2.97700 3.23170 3.28680 3.30310 3.34514 3.69922 4.11589 4.18516 4.30363 4.35292 4.41178 4.63811 4.78629 4.81357 4.89338 4.92201 4.94599 5.01650 5.06096 5.10770 5.23390 5.27003 5.30809 5.41795 5.45871 5.53241 5.59932 5.64422 5.71366 5.79134 5.85211 5.92132 6.00764 6.25332 6.28159 6.30555 6.37444 6.53686 6.62469 6.78096 6.97679 7.03798 7.10046 7.25622 7.60754 7.76941 7.86997 8.11744 8.58542 8.72158 9.33662 10.83290 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002457 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.284988 B =11391.981439 C =11673.892616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.465 5.465 3 C 0.428 3.572 4 N -0.593 5.593 5 C 0.344 3.656 6 N -0.529 5.529 7 C 0.348 3.652 8 C -0.285 4.285 9 C 0.074 3.926 10 N -0.235 5.235 11 N -0.332 5.332 12 C 0.263 3.737 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.891 5.891 17 Si 0.907 3.093 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.133 3.867 22 H 0.101 0.899 23 C -0.129 4.129 24 C -0.094 4.094 25 C -0.089 4.089 26 C -0.114 4.114 27 C -0.116 4.116 28 C -0.125 4.125 29 C -0.086 4.086 30 C -0.088 4.088 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.196 0.804 35 H 0.188 0.812 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 -22.045 -12.952 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.182 5.182 3 C 0.180 3.820 4 N -0.317 5.317 5 C 0.050 3.950 6 N -0.250 5.250 7 C 0.099 3.901 8 C -0.301 4.301 9 C -0.122 4.122 10 N -0.050 5.050 11 N -0.118 5.118 12 C 0.147 3.853 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.529 5.529 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C 0.026 3.974 22 H 0.119 0.881 23 C -0.168 4.168 24 C -0.131 4.131 25 C -0.089 4.089 26 C -0.132 4.132 27 C -0.134 4.134 28 C -0.143 4.143 29 C -0.104 4.104 30 C -0.088 4.088 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.213 0.787 35 H 0.205 0.795 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.888 -20.822 -11.962 25.276 hybrid contribution 0.636 -0.306 -0.117 0.715 sum -7.252 -21.127 -12.079 25.394 Atomic orbital electron populations 1.22664 0.83644 1.03209 1.02435 1.59081 1.09361 1.08122 1.41635 1.19410 0.88494 0.87111 0.87026 1.68495 1.19813 1.16794 1.26614 1.24529 0.91317 0.84297 0.94859 1.67528 1.19696 1.38409 0.99375 1.19064 0.92983 0.89236 0.88807 1.19690 1.14955 0.97381 0.98052 1.23555 1.00304 0.97418 0.90888 1.76993 1.11482 0.98817 1.17738 1.49532 1.42725 1.13892 1.05688 1.19823 0.97077 0.70620 0.97823 1.21238 1.01068 0.94610 1.40397 0.92025 1.24899 0.98423 0.94886 0.95450 1.69917 1.38126 0.98649 1.46167 0.86335 0.83214 0.77938 0.79080 1.20263 1.20791 1.19727 1.21017 1.00774 0.87793 0.87835 0.88113 1.22746 0.96699 0.99492 0.97834 1.21351 0.99185 0.92515 1.00010 1.20635 0.96042 0.94507 0.97759 1.20591 1.00456 0.91897 1.00217 1.21043 0.96674 0.98991 0.96690 1.21057 0.97218 0.96437 0.99607 1.20697 0.99757 0.92102 0.97880 1.20404 0.96701 0.94554 0.97187 0.93739 0.89671 0.90295 0.78748 0.79475 0.92260 0.92687 0.92222 0.89460 0.90099 0.90735 0.90062 0.86405 0.86055 0.85940 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 7.58 60.07 0.46 0.73 16 2 N -0.46 -5.74 4.74 -173.17 -0.82 -6.56 16 3 C 0.43 6.55 5.72 -154.84 -0.89 5.67 16 4 N -0.59 -8.85 7.42 -13.62 -0.10 -8.95 16 5 C 0.34 5.50 12.24 -92.12 -1.13 4.37 16 6 N -0.53 -10.80 10.47 -13.97 -0.15 -10.95 16 7 C 0.35 7.51 8.04 -156.23 -1.26 6.26 16 8 C -0.28 -5.14 5.84 -106.82 -0.62 -5.77 16 9 C 0.07 1.27 11.25 -17.11 -0.19 1.08 16 10 N -0.23 -5.00 12.45 30.80 0.38 -4.61 16 11 N -0.33 -7.84 3.63 -61.64 -0.22 -8.06 16 12 C 0.26 6.95 6.19 -5.19 -0.03 6.91 16 13 C -0.53 -15.18 9.39 -34.43 -0.32 -15.51 16 14 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 15 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 16 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 17 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.13 1.47 2.67 -67.83 -0.18 1.29 16 22 H 0.10 1.25 7.80 -51.93 -0.41 0.85 16 23 C -0.13 -1.24 5.37 -25.32 -0.14 -1.38 16 24 C -0.09 -0.76 5.92 -26.85 -0.16 -0.92 16 25 C -0.09 -0.81 5.18 -104.21 -0.54 -1.35 16 26 C -0.11 -0.93 10.04 -39.54 -0.40 -1.32 16 27 C -0.12 -0.90 10.05 -39.63 -0.40 -1.30 16 28 C -0.13 -1.05 10.05 -39.63 -0.40 -1.44 16 29 C -0.09 -0.84 10.04 -39.53 -0.40 -1.24 16 30 C -0.09 -0.90 4.99 -104.20 -0.52 -1.42 16 31 H 0.04 0.45 6.01 -51.93 -0.31 0.13 16 32 H 0.08 0.79 5.64 -51.93 -0.29 0.49 16 33 H 0.08 0.79 6.84 -51.93 -0.36 0.44 16 34 H 0.20 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.19 2.42 7.70 -52.48 -0.40 2.01 16 36 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.09 0.95 5.84 -51.93 -0.30 0.65 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.62 6.11 -51.93 -0.32 0.30 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -31.73 373.79 -12.51 -44.24 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.74 Total: 1.06 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -7.21 Total: -3.56 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -0.17 Total: -64.01 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.73 -12.51 -44.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.186 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds