Wall clock time and date at job start Tue Mar 31 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.38109 * 110.99596 * 2 1 4 4 N 1.32867 * 120.80952 * 249.31509 * 3 2 1 5 5 C 1.32118 * 121.19252 * 179.97438 * 4 3 2 6 6 N 1.31509 * 122.64754 * 359.97438 * 5 4 3 7 7 C 1.33202 * 120.68131 * 359.71002 * 6 5 4 8 8 C 1.40813 * 120.81507 * 69.29701 * 3 2 1 9 9 C 1.41166 * 134.69937 * 0.02562 * 8 3 2 10 10 N 1.30249 * 108.47083 * 179.97438 * 9 8 3 11 11 N 1.36316 * 134.61342 * 179.54184 * 7 6 5 12 12 C 1.46495 * 125.87275 * 0.78628 * 11 7 6 13 13 C 1.50708 * 109.47055 * 269.71552 * 12 11 7 14 14 H 1.07998 * 120.00112 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99976 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99780 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99781 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47176 * 90.00515 * 17 15 13 19 19 H 1.48501 * 109.46916 * 210.00080 * 17 15 13 20 20 H 1.48501 * 109.47486 * 330.00070 * 17 15 13 21 21 C 1.46900 * 110.99987 * 236.04654 * 2 1 3 22 22 H 1.08996 * 110.27191 * 172.60084 * 21 2 1 23 23 C 1.54346 * 110.30227 * 50.41945 * 21 2 1 24 24 C 1.54347 * 102.39358 * 267.42058 * 23 21 2 25 25 C 1.51366 * 105.16971 * 333.65434 * 24 23 21 26 26 C 1.38496 * 130.38887 * 197.17388 * 25 24 23 27 27 C 1.38098 * 120.21713 * 180.02562 * 26 25 24 28 28 C 1.38250 * 119.93490 * 0.02562 * 27 26 25 29 29 C 1.38106 * 119.93734 * 359.97438 * 28 27 26 30 30 C 1.38215 * 109.76231 * 17.19304 * 25 24 23 31 31 H 1.08992 * 109.47251 * 54.29153 * 1 2 3 32 32 H 1.09000 * 109.47253 * 174.29507 * 1 2 3 33 33 H 1.09003 * 109.46848 * 294.28955 * 1 2 3 34 34 H 1.07998 * 118.68074 * 180.02562 * 5 4 3 35 35 H 1.08006 * 125.76367 * 0.02562 * 9 8 3 36 36 H 1.08998 * 109.47437 * 29.71406 * 12 11 7 37 37 H 1.08999 * 109.47080 * 149.71918 * 12 11 7 38 38 H 0.96998 * 119.99656 * 180.02562 * 16 15 13 39 39 H 1.08995 * 110.82539 * 25.64802 * 23 21 2 40 40 H 1.08998 * 110.82342 * 149.19589 * 23 21 2 41 41 H 1.09001 * 110.30572 * 214.72679 * 24 23 21 42 42 H 1.08998 * 110.38654 * 92.62080 * 24 23 21 43 43 H 1.08000 * 119.89309 * 0.03133 * 26 25 24 44 44 H 1.08000 * 120.03885 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.03513 * 179.97438 * 28 27 26 46 46 H 1.07998 * 119.89454 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9639 1.2894 0.0000 4 7 2.5841 1.7803 -1.0676 5 6 3.0599 3.0128 -1.0760 6 7 2.9523 3.8219 -0.0449 7 6 2.3415 3.4245 1.0701 8 6 1.8232 2.1160 1.1312 9 6 1.2460 1.9593 2.4099 10 7 1.4040 3.0693 3.0728 11 7 2.0809 4.0021 2.2770 12 6 2.4433 5.3654 2.6723 13 6 3.8088 5.3573 3.3100 14 1 4.3521 4.4294 3.4110 15 6 4.3645 6.5345 3.7643 16 7 3.7027 7.6644 3.6417 17 14 6.0567 6.5243 4.5553 18 1 7.0925 6.7284 3.5110 19 1 6.1415 7.6174 5.5569 20 1 6.2813 5.2190 5.2270 21 6 1.9955 -0.7660 -1.1376 22 1 3.0774 -0.6507 -1.2022 23 6 1.3263 -0.3044 -2.4496 24 6 0.1359 -1.2788 -2.5750 25 6 0.5620 -2.5232 -1.8259 26 6 0.0547 -3.8113 -1.8638 27 6 0.6127 -4.8014 -1.0793 28 6 1.6809 -4.5066 -0.2527 29 6 2.1883 -3.2227 -0.2134 30 6 1.6303 -2.2286 -0.9999 31 1 -0.3633 0.5998 -0.8344 32 1 -0.3634 -1.0226 -0.1022 33 1 -0.3633 0.4227 0.9367 34 1 3.5566 3.3706 -1.9658 35 1 0.7568 1.0691 2.7769 36 1 2.4574 6.0075 1.7916 37 1 1.7113 5.7435 3.3860 38 1 4.0938 8.4926 3.9610 39 1 0.9774 0.7248 -2.3654 40 1 2.0085 -0.4156 -3.2925 41 1 -0.0519 -1.5137 -3.6227 42 1 -0.7559 -0.8494 -2.1186 43 1 -0.7799 -4.0423 -2.5091 44 1 0.2146 -5.8048 -1.1108 45 1 2.1183 -5.2796 0.3619 46 1 3.0230 -2.9933 0.4323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065519952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:22 Heat of formation + Delta-G solvation = 149.620466 kcal Electronic energy + Delta-G solvation = -30117.272989 eV Core-core repulsion = 26201.371337 eV Total energy + Delta-G solvation = -3915.901652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.160 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.13054 -41.71723 -39.96583 -38.44644 -35.94975 -35.40360 -33.75218 -33.11408 -32.17604 -31.03465 -29.75992 -29.26070 -28.70092 -26.60542 -25.54021 -24.63425 -23.81459 -23.52858 -21.93385 -21.61187 -20.96902 -19.24633 -18.85205 -18.69942 -17.73406 -17.38763 -16.81525 -16.64648 -16.53741 -16.02232 -15.84134 -15.50224 -15.40251 -15.30356 -15.02381 -14.58172 -14.17665 -14.10719 -13.95556 -13.79431 -13.69324 -13.29457 -13.17119 -13.04526 -12.82472 -12.77215 -12.48962 -12.40575 -12.34392 -12.09105 -12.06940 -11.86295 -11.75654 -11.60736 -11.56817 -10.78040 -10.50752 -10.22977 -9.83624 -9.68377 -9.50716 -9.31122 -8.38364 -6.55081 -0.34606 0.27751 0.42898 0.54252 1.28206 1.34388 1.34734 1.47194 1.52372 2.29367 2.30371 2.78636 2.91751 2.95800 3.12669 3.25777 3.44310 3.59013 3.66667 3.69701 3.98511 4.13466 4.17149 4.23487 4.25752 4.31580 4.36315 4.39166 4.45217 4.69174 4.73087 4.78573 4.80926 4.83987 4.86587 4.92726 5.05103 5.12377 5.16869 5.23534 5.30761 5.42062 5.43138 5.49920 5.62977 5.68051 5.74447 5.76251 5.82444 5.95672 6.15982 6.17213 6.49889 6.59298 7.13946 7.23336 8.69536 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002457 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.284988 B =11391.981439 C =11673.892616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.463 5.463 3 C 0.445 3.555 4 N -0.582 5.582 5 C 0.355 3.645 6 N -0.576 5.576 7 C 0.326 3.674 8 C -0.296 4.296 9 C 0.103 3.897 10 N -0.277 5.277 11 N -0.364 5.364 12 C 0.285 3.715 13 C -0.553 4.553 14 H 0.045 0.955 15 C 0.021 3.979 16 N -0.918 5.918 17 Si 0.974 3.026 18 H -0.269 1.269 19 H -0.268 1.268 20 H -0.273 1.273 21 C 0.132 3.868 22 H 0.082 0.918 23 C -0.124 4.124 24 C -0.088 4.088 25 C -0.092 4.092 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.130 4.130 29 C -0.102 4.102 30 C -0.105 4.105 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.234 0.766 35 H 0.233 0.767 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.275 0.725 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.771 -25.129 -14.216 30.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.181 5.181 3 C 0.195 3.805 4 N -0.307 5.307 5 C 0.063 3.937 6 N -0.299 5.299 7 C 0.078 3.922 8 C -0.312 4.312 9 C -0.092 4.092 10 N -0.092 5.092 11 N -0.151 5.151 12 C 0.166 3.834 13 C -0.592 4.592 14 H 0.063 0.937 15 C -0.180 4.180 16 N -0.556 5.556 17 Si 0.797 3.203 18 H -0.194 1.194 19 H -0.192 1.192 20 H -0.198 1.198 21 C 0.026 3.974 22 H 0.100 0.900 23 C -0.163 4.163 24 C -0.125 4.125 25 C -0.093 4.093 26 C -0.135 4.135 27 C -0.133 4.133 28 C -0.148 4.148 29 C -0.121 4.121 30 C -0.105 4.105 31 H 0.068 0.932 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.249 0.751 35 H 0.249 0.751 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.157 0.843 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.377 -23.948 -13.252 28.624 hybrid contribution 0.731 0.403 0.114 0.842 sum -7.646 -23.546 -13.138 28.026 Atomic orbital electron populations 1.22763 0.81798 1.04351 1.02925 1.59084 1.10644 1.06054 1.42269 1.19631 0.87187 0.87687 0.85997 1.68686 1.19705 1.16187 1.26074 1.25347 0.89570 0.84115 0.94684 1.67554 1.21821 1.40318 1.00245 1.19428 0.93585 0.90593 0.88593 1.19821 1.15556 0.96551 0.99244 1.24262 0.97759 0.97216 0.89958 1.76942 1.13573 0.99886 1.18796 1.49163 1.45163 1.13595 1.07200 1.19163 0.95767 0.72616 0.95861 1.21372 1.02115 0.94292 1.41385 0.93708 1.25778 1.02306 0.94307 0.95621 1.70006 1.39790 0.99251 1.46545 0.85319 0.78346 0.78159 0.78436 1.19417 1.19231 1.19756 1.21033 0.99789 0.88581 0.88013 0.89981 1.22664 0.97395 0.99163 0.97039 1.21318 0.98507 0.91645 1.00986 1.20761 0.95710 0.95275 0.97527 1.20892 1.00869 0.91422 1.00307 1.21390 0.96014 1.00128 0.95738 1.21306 0.97404 0.96197 0.99885 1.20822 1.00078 0.92928 0.98274 1.20340 0.97873 0.93824 0.98501 0.93236 0.88137 0.89903 0.75061 0.75074 0.94701 0.94856 0.91636 0.90659 0.89718 0.89208 0.89285 0.84309 0.83642 0.84304 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 7.58 127.69 0.97 1.45 16 2 N -0.46 -10.66 4.74 -701.80 -3.33 -13.98 16 3 C 0.44 13.16 5.72 133.64 0.76 13.92 16 4 N -0.58 -16.82 7.42 -197.01 -1.46 -18.29 16 5 C 0.36 11.20 12.24 180.87 2.21 13.41 16 6 N -0.58 -24.22 10.47 -198.10 -2.07 -26.30 16 7 C 0.33 14.57 8.04 134.14 1.08 15.65 16 8 C -0.30 -10.67 5.84 -21.29 -0.12 -10.79 16 9 C 0.10 3.52 11.25 85.65 0.96 4.48 16 10 N -0.28 -12.19 12.45 -56.46 -0.70 -12.89 16 11 N -0.36 -18.16 3.63 -348.94 -1.27 -19.43 16 12 C 0.28 16.06 6.19 85.64 0.53 16.59 16 13 C -0.55 -32.94 9.39 25.60 0.24 -32.70 16 14 H 0.04 2.75 7.81 -2.91 -0.02 2.73 16 15 C 0.02 1.20 5.46 84.66 0.46 1.66 16 16 N -0.92 -54.26 13.29 21.45 0.28 -53.98 16 17 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 21 C 0.13 2.73 2.67 44.84 0.12 2.85 16 22 H 0.08 1.98 7.80 -2.39 -0.02 1.96 16 23 C -0.12 -2.13 5.37 31.51 0.17 -1.96 16 24 C -0.09 -1.16 5.92 30.52 0.18 -0.98 16 25 C -0.09 -1.41 5.18 -19.60 -0.10 -1.51 16 26 C -0.12 -1.49 10.04 22.30 0.22 -1.27 16 27 C -0.11 -1.39 10.05 22.24 0.22 -1.17 16 28 C -0.13 -1.85 10.05 22.24 0.22 -1.63 16 29 C -0.10 -1.84 10.04 22.30 0.22 -1.62 16 30 C -0.10 -1.94 4.99 -19.59 -0.10 -2.04 16 31 H 0.05 0.87 6.01 -2.39 -0.01 0.86 16 32 H 0.10 1.55 5.64 -2.39 -0.01 1.54 16 33 H 0.08 1.45 6.84 -2.39 -0.02 1.43 16 34 H 0.23 5.19 8.06 -2.91 -0.02 5.17 16 35 H 0.23 5.41 7.70 -2.91 -0.02 5.39 16 36 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.03 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.07 1.50 5.84 -2.39 -0.01 1.48 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 1.06 6.11 -2.39 -0.01 1.04 16 43 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 45 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 46 H 0.12 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -72.50 373.79 2.76 -69.74 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.02 Total: 13.68 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 8.26 Total: 14.35 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -8.55 Total: -144.86 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -72.50 2.76 -69.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.362 kcal (2) G-P(sol) polarization free energy of solvation -72.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds