Wall clock time and date at job start Tue Mar 31 2020 06:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.38115 * 111.00130 * 2 1 4 4 N 1.32858 * 120.81243 * 112.65099 * 3 2 1 5 5 C 1.32130 * 121.18817 * 180.02562 * 4 3 2 6 6 N 1.31499 * 122.64623 * 359.97438 * 5 4 3 7 7 C 1.33203 * 120.68934 * 0.02562 * 6 5 4 8 8 C 1.40812 * 120.80766 * 292.67404 * 3 2 1 9 9 C 1.41170 * 134.70148 * 359.97438 * 8 3 2 10 10 N 1.30247 * 108.47113 * 180.02562 * 9 8 3 11 11 N 1.36305 * 134.62228 * 180.02562 * 7 6 5 12 12 C 1.46504 * 125.87419 * 359.97438 * 11 7 6 13 13 C 1.50703 * 109.47265 * 270.02803 * 12 11 7 14 14 H 1.08001 * 119.99455 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00081 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99555 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00130 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47192 * 89.99252 * 17 15 13 19 19 H 1.48501 * 109.46756 * 209.99780 * 17 15 13 20 20 H 1.48501 * 109.46764 * 329.99439 * 17 15 13 21 21 C 1.46903 * 110.99976 * 123.95021 * 2 1 3 22 22 H 1.08997 * 110.26802 * 185.00751 * 21 2 1 23 23 C 1.54344 * 110.30608 * 307.08477 * 21 2 1 24 24 C 1.54346 * 102.39343 * 92.57344 * 23 21 2 25 25 C 1.51375 * 105.16884 * 26.34873 * 24 23 21 26 26 C 1.38498 * 130.39344 * 162.80799 * 25 24 23 27 27 C 1.38097 * 120.21607 * 180.02562 * 26 25 24 28 28 C 1.38255 * 119.93726 * 0.02562 * 27 26 25 29 29 C 1.38106 * 119.93404 * 359.97438 * 28 27 26 30 30 C 1.38308 * 120.28152 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.46829 * 65.38147 * 1 2 3 32 32 H 1.08999 * 109.47045 * 185.38750 * 1 2 3 33 33 H 1.09002 * 109.46963 * 305.38050 * 1 2 3 34 34 H 1.08001 * 118.67200 * 179.97438 * 5 4 3 35 35 H 1.08003 * 125.76204 * 0.02562 * 9 8 3 36 36 H 1.08999 * 109.47034 * 30.02612 * 12 11 7 37 37 H 1.09003 * 109.47083 * 150.02649 * 12 11 7 38 38 H 0.97008 * 119.99615 * 179.97438 * 16 15 13 39 39 H 1.08998 * 110.82526 * 210.80421 * 23 21 2 40 40 H 1.09003 * 110.81777 * 334.35294 * 23 21 2 41 41 H 1.08999 * 110.30668 * 145.27145 * 24 23 21 42 42 H 1.09000 * 110.30459 * 267.32880 * 24 23 21 43 43 H 1.08002 * 119.88810 * 359.97438 * 26 25 24 44 44 H 1.08003 * 120.03409 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.03570 * 180.02562 * 28 27 26 46 46 H 1.07995 * 119.89324 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9640 1.2894 0.0000 4 7 2.6181 1.7672 1.0530 5 6 3.0943 2.9997 1.0612 6 7 2.9547 3.8209 0.0437 7 6 2.3139 3.4350 -1.0584 8 6 1.7872 2.1298 -1.1160 9 6 1.1691 1.9887 -2.3773 10 7 1.3060 3.1067 -3.0313 11 7 2.0109 4.0288 -2.2473 12 6 2.3615 5.3966 -2.6378 13 6 1.2578 6.3357 -2.2243 14 1 0.3825 5.9519 -1.7214 15 6 1.3650 7.6846 -2.4890 16 7 2.4307 8.1517 -3.1019 17 14 -0.0029 8.8487 -1.9759 18 1 0.2625 9.3498 -0.6035 19 1 -0.0577 9.9943 -2.9193 20 1 -1.3007 8.1273 -1.9971 21 6 1.9954 -0.7659 1.1377 22 1 3.0817 -0.6849 1.1771 23 6 1.3725 -0.2620 2.4568 24 6 0.1532 -1.1934 2.6244 25 6 0.5200 -2.4628 1.8859 26 6 -0.0290 -3.7324 1.9560 27 6 0.4780 -4.7528 1.1758 28 6 1.5374 -4.5074 0.3220 29 6 2.0862 -3.2421 0.2507 30 6 1.5809 -2.2178 1.0307 31 1 -0.3633 0.4281 -0.9343 32 1 -0.3633 -1.0231 0.0965 33 1 -0.3633 0.5950 0.8379 34 1 3.6194 3.3465 1.9390 35 1 0.6675 1.1032 -2.7388 36 1 3.2897 5.6881 -2.1463 37 1 2.4926 5.4436 -3.7189 38 1 2.5060 9.1007 -3.2885 39 1 2.0697 -0.3834 3.2858 40 1 1.0565 0.7771 2.3639 41 1 -0.0183 -1.4058 3.6797 42 1 -0.7333 -0.7392 2.1818 43 1 -0.8558 -3.9251 2.6236 44 1 0.0479 -5.7419 1.2330 45 1 1.9348 -5.3042 -0.2892 46 1 2.9140 -3.0513 -0.4161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:27 Heat of formation + Delta-G solvation = 166.204832 kcal Electronic energy + Delta-G solvation = -30153.868937 eV Core-core repulsion = 26238.686437 eV Total energy + Delta-G solvation = -3915.182500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.160 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.80894 -40.78247 -38.73029 -37.42525 -34.73169 -33.70620 -32.33307 -31.52141 -31.38840 -29.71427 -29.04198 -28.03220 -27.20194 -25.55840 -23.76730 -23.28169 -22.82584 -22.41194 -21.12163 -20.66304 -19.72377 -17.89044 -17.40212 -16.74670 -16.64222 -16.28751 -15.82954 -15.36216 -15.28541 -15.10651 -14.68228 -14.31827 -14.25505 -13.97518 -13.54392 -13.47202 -13.22899 -13.11571 -12.91033 -12.57671 -12.33166 -12.20025 -12.02584 -11.72060 -11.54986 -11.40247 -11.20185 -11.12717 -11.02202 -10.91908 -10.85887 -10.69834 -10.32538 -10.20548 -9.81550 -9.27998 -9.06309 -8.85924 -8.71962 -8.63439 -8.37138 -7.91781 -6.25616 -4.32481 0.98160 1.08681 1.18346 1.71535 2.88918 2.96346 3.21923 3.27572 3.31025 3.32650 3.69519 4.11972 4.18800 4.29270 4.35896 4.41317 4.63641 4.78276 4.80799 4.89702 4.92358 4.95966 5.01486 5.06875 5.10071 5.24325 5.27819 5.30764 5.42880 5.45672 5.53876 5.59903 5.66306 5.72409 5.79853 5.85626 5.93237 6.02563 6.25313 6.28506 6.29561 6.36924 6.53017 6.62454 6.77295 6.98144 7.03835 7.10002 7.25790 7.60216 7.76463 7.86349 8.11820 8.58615 8.71189 9.32743 10.82623 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.021890 B = 0.002452 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.815825 B =11415.720501 C =11588.761542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.464 5.464 3 C 0.429 3.571 4 N -0.593 5.593 5 C 0.344 3.656 6 N -0.529 5.529 7 C 0.349 3.651 8 C -0.286 4.286 9 C 0.073 3.927 10 N -0.235 5.235 11 N -0.332 5.332 12 C 0.263 3.737 13 C -0.535 4.535 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.890 5.890 17 Si 0.907 3.093 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.134 3.866 22 H 0.101 0.899 23 C -0.129 4.129 24 C -0.095 4.095 25 C -0.088 4.088 26 C -0.114 4.114 27 C -0.115 4.115 28 C -0.125 4.125 29 C -0.086 4.086 30 C -0.089 4.089 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.196 0.804 35 H 0.188 0.812 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.268 0.732 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -24.054 10.750 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.181 5.181 3 C 0.180 3.820 4 N -0.317 5.317 5 C 0.050 3.950 6 N -0.251 5.251 7 C 0.100 3.900 8 C -0.303 4.303 9 C -0.122 4.122 10 N -0.051 5.051 11 N -0.118 5.118 12 C 0.146 3.854 13 C -0.573 4.573 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.198 1.198 21 C 0.027 3.973 22 H 0.119 0.881 23 C -0.168 4.168 24 C -0.131 4.131 25 C -0.089 4.089 26 C -0.132 4.132 27 C -0.134 4.134 28 C -0.143 4.143 29 C -0.105 4.105 30 C -0.089 4.089 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.213 0.787 35 H 0.205 0.795 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.489 -22.861 9.729 24.970 hybrid contribution -1.053 0.338 0.828 1.381 sum -3.542 -22.524 10.557 25.126 Atomic orbital electron populations 1.22672 0.83562 1.03225 1.02565 1.59053 1.09422 1.08155 1.41491 1.19405 0.88540 0.87080 0.86984 1.68506 1.19641 1.17255 1.26309 1.24533 0.91573 0.84040 0.94818 1.67521 1.20090 1.37731 0.99750 1.19049 0.93084 0.88956 0.88906 1.19684 1.14470 0.97490 0.98623 1.23554 1.00158 0.97147 0.91339 1.76992 1.10819 0.98704 1.18535 1.49530 1.41355 1.13305 1.07637 1.19826 0.97502 0.70005 0.98029 1.21226 1.04383 0.91854 1.39856 0.92068 1.24900 0.96340 0.97843 0.94582 1.69921 1.27605 1.14823 1.40446 0.86338 0.81686 0.80005 0.78541 1.20269 1.20782 1.19764 1.21004 1.00675 0.87737 0.87930 0.88131 1.22763 0.96575 0.99804 0.97647 1.21358 0.99314 0.92380 1.00095 1.20715 0.95939 0.94611 0.97586 1.20601 1.00444 0.91878 1.00250 1.21046 0.96909 0.98831 0.96584 1.21050 0.97098 0.96713 0.99486 1.20628 0.99802 0.91977 0.98045 1.20414 0.96849 0.94554 0.97126 0.90227 0.89681 0.93674 0.78743 0.79492 0.92254 0.92664 0.92209 0.90103 0.89347 0.90716 0.90049 0.86390 0.86052 0.85943 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 7.59 60.06 0.46 0.73 16 2 N -0.46 -5.73 4.76 -173.18 -0.82 -6.56 16 3 C 0.43 6.55 5.73 -154.85 -0.89 5.67 16 4 N -0.59 -8.84 7.29 -13.62 -0.10 -8.94 16 5 C 0.34 5.50 12.24 -92.12 -1.13 4.37 16 6 N -0.53 -10.81 10.47 -13.97 -0.15 -10.96 16 7 C 0.35 7.53 8.04 -156.23 -1.26 6.28 16 8 C -0.29 -5.17 5.83 -106.82 -0.62 -5.80 16 9 C 0.07 1.26 11.16 -17.11 -0.19 1.07 16 10 N -0.23 -5.00 12.45 30.80 0.38 -4.61 16 11 N -0.33 -7.83 3.63 -61.64 -0.22 -8.06 16 12 C 0.26 6.94 6.19 -5.19 -0.03 6.91 16 13 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 14 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 15 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 16 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 17 Si 0.91 21.49 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.13 1.47 2.68 -67.83 -0.18 1.29 16 22 H 0.10 1.21 7.86 -51.93 -0.41 0.80 16 23 C -0.13 -1.28 5.34 -25.32 -0.14 -1.41 16 24 C -0.09 -0.80 5.92 -26.85 -0.16 -0.96 16 25 C -0.09 -0.81 5.15 -104.11 -0.54 -1.34 16 26 C -0.11 -0.93 10.04 -39.54 -0.40 -1.33 16 27 C -0.12 -0.89 10.05 -39.63 -0.40 -1.29 16 28 C -0.13 -1.02 10.05 -39.62 -0.40 -1.42 16 29 C -0.09 -0.81 10.03 -39.60 -0.40 -1.21 16 30 C -0.09 -0.90 4.90 -104.19 -0.51 -1.41 16 31 H 0.08 0.85 6.58 -51.93 -0.34 0.50 16 32 H 0.08 0.82 5.75 -51.93 -0.30 0.52 16 33 H 0.04 0.49 5.95 -51.93 -0.31 0.18 16 34 H 0.20 2.33 8.06 -52.49 -0.42 1.90 16 35 H 0.19 2.41 7.55 -52.48 -0.40 2.01 16 36 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.02 5.82 -51.93 -0.30 0.72 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.66 6.13 -51.93 -0.32 0.35 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -31.51 373.14 -12.49 -44.00 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.72 Total: 1.34 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -7.19 Total: -3.49 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.17 Total: -63.94 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.51 -12.49 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.209 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds