Wall clock time and date at job start Tue Mar 31 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00082 * 2 1 4 4 C 1.52997 * 109.47179 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46983 * 65.00188 * 4 3 2 6 6 C 1.34780 * 119.99566 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00423 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99795 * 180.02562 * 6 5 4 9 9 N 1.46901 * 109.46921 * 179.97438 * 8 6 5 10 10 C 1.46893 * 111.00243 * 293.95400 * 9 8 6 11 11 C 1.38114 * 110.99734 * 169.99812 * 9 8 6 12 12 N 1.32860 * 120.81323 * 359.72405 * 11 9 8 13 13 C 1.32126 * 121.19277 * 179.69826 * 12 11 9 14 14 N 1.31507 * 122.64528 * 0.63103 * 13 12 11 15 15 C 1.33204 * 120.68324 * 359.67193 * 14 13 12 16 16 C 1.40818 * 120.81077 * 179.97438 * 11 9 8 17 17 C 1.41164 * 134.70255 * 0.03085 * 16 11 9 18 18 N 1.30253 * 108.47100 * 179.97438 * 17 16 11 19 19 N 1.36305 * 134.61536 * 179.97438 * 15 14 13 20 20 C 1.46503 * 125.87113 * 0.02562 * 19 15 14 21 21 C 1.50702 * 109.47435 * 89.99675 * 20 19 15 22 22 H 1.08007 * 119.99717 * 0.02562 * 21 20 19 23 23 C 1.37873 * 120.00156 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00191 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99913 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47540 * 59.99725 * 25 23 21 27 27 H 1.48501 * 109.47159 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47121 * 299.99560 * 25 23 21 29 29 H 1.08999 * 109.47015 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46948 * 299.99833 * 1 2 3 31 31 H 1.08998 * 109.47532 * 59.99457 * 1 2 3 32 32 H 1.09006 * 109.46936 * 60.00094 * 3 2 1 33 33 H 1.09008 * 109.47113 * 300.00378 * 3 2 1 34 34 H 1.09001 * 109.46832 * 305.00005 * 4 3 2 35 35 H 1.09002 * 109.47153 * 185.00196 * 4 3 2 36 36 H 0.96995 * 120.00423 * 359.97438 * 5 4 3 37 37 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 38 38 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 39 39 H 1.08999 * 109.47439 * 60.00146 * 10 9 8 40 40 H 1.08997 * 109.47257 * 180.02562 * 10 9 8 41 41 H 1.09006 * 109.46808 * 299.99830 * 10 9 8 42 42 H 1.08000 * 118.67510 * 180.28221 * 13 12 11 43 43 H 1.08004 * 125.76451 * 359.94363 * 17 16 11 44 44 H 1.08999 * 109.46945 * 209.99472 * 20 19 15 45 45 H 1.08994 * 109.47315 * 329.99541 * 20 19 15 46 46 H 0.96992 * 120.00571 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 5.2883 0.3557 -1.4762 7 8 6.1050 0.6816 -0.6411 8 6 5.7412 -0.2818 -2.7645 9 7 7.2056 -0.3978 -2.7650 10 6 7.8387 0.9274 -2.7894 11 6 7.6402 -1.1736 -3.8219 12 7 6.7734 -1.7097 -4.6742 13 6 7.1812 -2.4481 -5.6911 14 7 8.4508 -2.7068 -5.9158 15 6 9.3962 -2.2193 -5.1139 16 6 9.0125 -1.4199 -4.0193 17 6 10.1957 -1.0425 -3.3482 18 7 11.2107 -1.5635 -3.9767 19 7 10.7562 -2.3020 -5.0766 20 6 11.5980 -3.0351 -6.0255 21 6 11.9794 -2.1259 -7.1652 22 1 11.6301 -1.1040 -7.1810 23 6 12.7752 -2.5983 -8.1873 24 7 13.2018 -3.8422 -8.1673 25 14 13.2485 -1.4711 -9.5996 26 1 13.9987 -0.3036 -9.0712 27 1 14.1017 -2.2142 -10.5615 28 1 12.0209 -0.9996 -10.2895 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8465 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9786 2.1765 0.0890 36 1 3.3224 0.3034 -1.9206 37 1 5.2977 -1.2734 -2.8548 38 1 5.4257 0.3353 -3.6058 39 1 7.5333 1.4923 -1.9087 40 1 8.9226 0.8123 -2.7897 41 1 7.5301 1.4610 -3.6884 42 1 6.4417 -2.8603 -6.3617 43 1 10.2502 -0.4256 -2.4634 44 1 12.4993 -3.3811 -5.5195 45 1 11.0472 -3.8920 -6.4131 46 1 13.7613 -4.1746 -8.8865 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065533169.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:35 Heat of formation + Delta-G solvation = 58.528436 kcal Electronic energy + Delta-G solvation = -29803.174843 eV Core-core repulsion = 25537.899792 eV Total energy + Delta-G solvation = -4265.275051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.64822 -40.18980 -38.80880 -38.34432 -37.03182 -34.99286 -33.79626 -32.45978 -31.49380 -30.87410 -29.86502 -28.35888 -27.13160 -26.76319 -25.90675 -23.72102 -23.28862 -22.88535 -22.08564 -20.75712 -20.01248 -17.88752 -17.58325 -17.22118 -17.09918 -16.74001 -16.69175 -16.21394 -15.94558 -15.56672 -15.24870 -15.15628 -14.69171 -14.54461 -14.33111 -14.21107 -13.82909 -13.47377 -13.33722 -13.26574 -12.95326 -12.70960 -12.27996 -12.21768 -11.99226 -11.87824 -11.69014 -11.63583 -11.20929 -11.06849 -10.94337 -10.78353 -10.32375 -10.30739 -10.19126 -10.00375 -9.81289 -9.40507 -9.25097 -8.84673 -8.61061 -8.34803 -7.87417 -6.23220 -4.30170 1.02753 1.73928 2.42101 2.65972 2.91809 2.99987 3.17337 3.25273 3.28515 3.33001 3.51339 4.19856 4.31110 4.34221 4.39189 4.51130 4.60661 4.65903 4.73928 4.82446 4.87161 4.90945 4.98350 5.07827 5.12294 5.12648 5.21305 5.27424 5.31873 5.41767 5.43551 5.52687 5.63685 5.86388 6.10506 6.23791 6.35676 6.54008 6.61003 7.00537 7.02381 7.08124 7.17975 7.28272 7.62177 7.78711 7.88751 7.98729 8.14569 8.60767 8.73276 9.34864 10.84981 Molecular weight = 348.17amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.001937 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.606036 B =14450.388969 C =14825.761803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.124 3.876 5 N -0.728 5.728 6 C 0.514 3.486 7 O -0.524 6.524 8 C 0.046 3.954 9 N -0.454 5.454 10 C 0.020 3.980 11 C 0.432 3.568 12 N -0.603 5.603 13 C 0.350 3.650 14 N -0.533 5.533 15 C 0.352 3.648 16 C -0.295 4.295 17 C 0.072 3.928 18 N -0.235 5.235 19 N -0.331 5.331 20 C 0.263 3.737 21 C -0.535 4.535 22 H 0.061 0.939 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.908 3.092 26 H -0.275 1.275 27 H -0.283 1.283 28 H -0.275 1.275 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.404 0.596 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.197 0.803 43 H 0.191 0.809 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.284 10.745 14.405 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.030 4.030 4 C 0.000 4.000 5 N -0.382 5.382 6 C 0.300 3.700 7 O -0.400 6.400 8 C -0.084 4.084 9 N -0.170 5.170 10 C -0.126 4.126 11 C 0.182 3.818 12 N -0.329 5.329 13 C 0.056 3.944 14 N -0.255 5.255 15 C 0.104 3.896 16 C -0.311 4.311 17 C -0.123 4.123 18 N -0.050 5.050 19 N -0.117 5.117 20 C 0.146 3.854 21 C -0.574 4.574 22 H 0.079 0.921 23 C -0.136 4.136 24 N -0.528 5.528 25 Si 0.735 3.265 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.239 0.761 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.214 0.786 43 H 0.207 0.793 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.408 9.839 14.599 29.290 hybrid contribution -0.798 1.237 -1.215 1.909 sum -24.207 11.076 13.384 29.796 Atomic orbital electron populations 1.22776 0.80621 1.03123 1.00059 1.87952 1.20019 1.27326 1.95443 1.22830 0.93145 0.85541 1.01445 1.21350 0.91764 0.99259 0.87646 1.45844 1.07631 1.63947 1.20762 1.20599 0.82130 0.78410 0.88845 1.90691 1.52435 1.50316 1.46535 1.21888 0.87683 1.04064 0.94724 1.58181 1.06895 1.15544 1.36366 1.22826 1.01073 0.86051 1.02656 1.19410 0.87586 0.89568 0.85214 1.68298 1.37877 1.19379 1.07349 1.24495 0.89850 0.89057 0.90995 1.67524 1.00402 1.26868 1.30688 1.19017 0.87483 0.92456 0.90683 1.19621 0.94401 1.13050 1.04061 1.23627 0.88002 1.00651 1.00034 1.77000 1.23068 1.07721 0.97261 1.49531 1.01435 1.39114 1.21666 1.19826 0.89658 0.91109 0.84776 1.21197 1.32543 0.98082 1.05581 0.92092 1.24893 0.95178 0.95424 0.98128 1.69903 1.34699 1.14631 1.33564 0.86396 0.78584 0.80372 0.81195 1.19995 1.20861 1.19994 0.89371 0.93970 0.93898 0.91522 0.92420 0.90449 0.89853 0.76106 0.86022 0.89981 0.88042 0.89580 0.94364 0.78611 0.79274 0.92639 0.92215 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.55 10.65 -35.23 -0.38 -2.92 16 3 C 0.05 0.21 6.07 37.16 0.23 0.44 16 4 C 0.12 0.79 6.06 -4.04 -0.02 0.77 16 5 N -0.73 -5.32 5.50 -60.30 -0.33 -5.65 16 6 C 0.51 5.33 7.56 -10.98 -0.08 5.25 16 7 O -0.52 -7.18 14.31 5.56 0.08 -7.10 16 8 C 0.05 0.49 4.73 -4.97 -0.02 0.46 16 9 N -0.45 -6.08 4.52 -182.03 -0.82 -6.90 16 10 C 0.02 0.23 8.96 60.06 0.54 0.77 16 11 C 0.43 6.93 6.42 -154.84 -0.99 5.93 16 12 N -0.60 -9.24 8.76 -13.62 -0.12 -9.36 16 13 C 0.35 5.67 12.24 -92.11 -1.13 4.55 16 14 N -0.53 -11.06 10.47 -13.97 -0.15 -11.21 16 15 C 0.35 7.78 8.04 -156.23 -1.26 6.52 16 16 C -0.29 -5.54 5.74 -106.82 -0.61 -6.15 16 17 C 0.07 1.29 10.73 -17.11 -0.18 1.10 16 18 N -0.23 -5.12 12.45 30.80 0.38 -4.73 16 19 N -0.33 -7.96 3.63 -61.64 -0.22 -8.18 16 20 C 0.26 7.01 6.19 -5.19 -0.03 6.98 16 21 C -0.54 -15.22 9.39 -34.44 -0.32 -15.55 16 22 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 23 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 24 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 25 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.04 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.19 8.14 -51.92 -0.42 -0.24 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.40 2.16 8.47 -40.82 -0.35 1.81 16 37 H 0.12 1.26 7.54 -51.93 -0.39 0.87 16 38 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 39 H 0.10 1.17 5.88 -51.93 -0.31 0.87 16 40 H 0.09 1.03 5.04 -51.93 -0.26 0.77 16 41 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.19 2.59 6.85 -52.48 -0.36 2.23 16 44 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 390.53 15.07 5.89 5.89 Total: -1.00 -35.10 390.53 -9.12 -44.22 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.28 Total: 0.22 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -2.88 Total: 14.10 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -0.52 Total: -70.98 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.30 Total: -10.02 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.10 -9.12 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065533169.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.745 kcal (2) G-P(sol) polarization free energy of solvation -35.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds