Wall clock time and date at job start Tue Mar 31 2020 06:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48502 * 109.46799 * 269.99843 * 3 2 1 5 5 H 1.48497 * 109.47319 * 29.99674 * 3 2 1 6 6 H 1.48504 * 109.47094 * 150.00266 * 3 2 1 7 7 C 1.37880 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00265 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46710 * 179.97438 * 9 7 2 11 11 N 1.40065 * 125.87235 * 90.03049 * 10 9 7 12 12 C 1.30244 * 109.69138 * 179.97438 * 11 10 9 13 13 C 1.41169 * 108.47378 * 359.97438 * 12 11 10 14 14 C 1.36305 * 125.87313 * 270.01888 * 10 9 7 15 15 N 1.33199 * 134.62335 * 0.02562 * 14 10 9 16 16 C 1.31498 * 120.68938 * 180.02562 * 15 14 10 17 17 N 1.32126 * 122.64990 * 359.77601 * 16 15 14 18 18 C 1.32862 * 121.18687 * 0.47554 * 17 16 15 19 19 N 1.38112 * 120.81399 * 179.80251 * 18 17 16 20 20 C 1.46496 * 120.00053 * 359.71595 * 19 18 17 21 21 H 1.08997 * 109.21669 * 34.44896 * 20 19 18 22 22 C 1.52728 * 109.25571 * 153.90278 * 20 19 18 23 23 C 1.53327 * 108.37895 * 171.35819 * 22 20 19 24 24 C 1.52734 * 108.38031 * 290.09123 * 23 22 20 25 25 C 1.50641 * 110.59059 * 51.05501 * 24 23 22 26 26 C 1.38911 * 117.74889 * 162.56105 * 25 24 23 27 27 C 1.37929 * 120.54263 * 179.71013 * 26 25 24 28 28 C 1.38262 * 119.77677 * 359.97438 * 27 26 25 29 29 C 1.37931 * 119.76505 * 0.35087 * 28 27 26 30 30 C 1.37661 * 122.56716 * 342.44319 * 25 24 23 31 31 H 0.96994 * 120.00074 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46789 * 59.99664 * 9 7 2 33 33 H 1.08998 * 109.47009 * 299.99698 * 9 7 2 34 34 H 1.08004 * 125.76207 * 179.97438 * 12 11 10 35 35 H 1.08005 * 118.68130 * 179.97438 * 16 15 14 36 36 H 0.96996 * 119.99943 * 179.72375 * 19 18 17 37 37 H 1.08996 * 109.68787 * 291.08648 * 22 20 19 38 38 H 1.09008 * 109.68285 * 51.60614 * 22 20 19 39 39 H 1.08999 * 109.68251 * 49.81338 * 23 22 20 40 40 H 1.08999 * 109.68389 * 170.33103 * 23 22 20 41 41 H 1.08998 * 109.25964 * 171.35005 * 24 23 22 42 42 H 1.08996 * 109.25341 * 290.82223 * 24 23 22 43 43 H 1.07999 * 119.72831 * 359.69621 * 26 25 24 44 44 H 1.08007 * 120.11379 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.12251 * 180.11485 * 28 27 26 46 46 H 1.08004 * 119.72698 * 179.74982 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.7360 -4.2369 1.1355 12 6 3.5486 -5.1878 0.7726 13 6 3.5851 -5.2309 -0.6380 14 6 2.7224 -4.2195 -1.1040 15 7 2.5801 -4.0518 -2.4177 16 6 3.2326 -4.8155 -3.2663 17 7 4.0554 -5.7730 -2.8765 18 6 4.2604 -6.0215 -1.5876 19 7 5.1192 -7.0270 -1.1888 20 6 5.8124 -7.8390 -2.1919 21 1 6.0474 -7.2178 -3.0562 22 6 7.1090 -8.3804 -1.5932 23 6 7.7073 -9.3958 -2.5740 24 6 6.8168 -10.6366 -2.5856 25 6 5.3769 -10.2532 -2.8070 26 6 4.4971 -11.2495 -3.2109 27 6 3.1648 -10.9636 -3.4245 28 6 2.6999 -9.6754 -3.2349 29 6 3.5733 -8.6834 -2.8405 30 6 4.9150 -8.9697 -2.6223 31 1 -0.4850 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6240 -2.5567 0.8903 34 1 4.1012 -5.8343 1.4384 35 1 3.0928 -4.6515 -4.3246 36 1 5.2632 -7.1957 -0.2445 37 1 7.8117 -7.5618 -1.4380 38 1 6.8982 -8.8687 -0.6417 39 1 7.7458 -8.9622 -3.5733 40 1 8.7128 -9.6678 -2.2529 41 1 7.1386 -11.3026 -3.3862 42 1 6.9075 -11.1530 -1.6301 43 1 4.8593 -12.2561 -3.3590 44 1 2.4867 -11.7437 -3.7380 45 1 1.6574 -9.4458 -3.3988 46 1 3.2103 -7.6764 -2.6965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065542876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:58 Heat of formation + Delta-G solvation = 139.029270 kcal Electronic energy + Delta-G solvation = -29906.059995 eV Core-core repulsion = 25989.699075 eV Total energy + Delta-G solvation = -3916.360921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.160 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.49105 -40.35166 -38.42273 -36.91098 -35.49040 -33.75830 -32.53161 -31.33350 -31.30641 -30.39983 -29.62506 -28.04045 -27.15511 -24.08369 -24.00582 -23.22741 -22.87881 -22.49414 -21.69757 -20.12376 -19.68887 -17.87732 -17.50331 -16.74585 -16.67945 -16.36811 -15.85268 -15.54351 -15.16795 -15.07734 -14.59078 -14.24139 -14.21850 -14.04411 -13.76846 -13.62187 -13.35206 -13.22989 -12.85589 -12.77924 -12.30312 -12.16046 -11.91993 -11.66656 -11.53441 -11.47901 -11.28317 -11.05324 -10.98579 -10.79020 -10.75508 -10.55735 -10.28606 -10.09904 -9.83927 -9.27267 -8.82410 -8.75507 -8.63226 -8.59146 -8.24351 -7.64546 -6.21896 -4.28373 1.22199 1.29835 1.33549 1.90899 2.92274 3.02536 3.11393 3.24739 3.30193 3.35707 3.71289 4.29082 4.33763 4.34641 4.46054 4.48008 4.65534 4.72479 4.73962 4.81450 4.93722 4.98860 5.05584 5.13401 5.15138 5.20594 5.24491 5.32911 5.43084 5.49078 5.56487 5.63647 5.68806 5.70980 5.77041 5.92402 5.97506 6.03242 6.31760 6.40044 6.48975 6.56421 6.67685 6.89531 6.98297 7.03000 7.10020 7.22566 7.49455 7.71862 7.89737 7.91677 8.22030 8.71397 8.81203 9.36645 10.86375 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.002492 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.207200 B =11234.448348 C =11697.614322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.069 3.931 13 C -0.338 4.338 14 C 0.364 3.636 15 N -0.553 5.553 16 C 0.365 3.635 17 N -0.617 5.617 18 C 0.510 3.490 19 N -0.700 5.700 20 C 0.197 3.803 21 H 0.105 0.895 22 C -0.127 4.127 23 C -0.115 4.115 24 C -0.081 4.081 25 C -0.073 4.073 26 C -0.131 4.131 27 C -0.118 4.118 28 C -0.130 4.130 29 C -0.094 4.094 30 C -0.091 4.091 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.182 0.818 35 H 0.195 0.805 36 H 0.410 0.590 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.367 -23.432 -5.833 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.058 5.058 12 C -0.126 4.126 13 C -0.356 4.356 14 C 0.116 3.884 15 N -0.278 5.278 16 C 0.072 3.928 17 N -0.348 5.348 18 C 0.258 3.742 19 N -0.332 5.332 20 C 0.092 3.908 21 H 0.123 0.877 22 C -0.165 4.165 23 C -0.153 4.153 24 C -0.118 4.118 25 C -0.074 4.074 26 C -0.149 4.149 27 C -0.136 4.136 28 C -0.148 4.148 29 C -0.113 4.113 30 C -0.092 4.092 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.199 0.801 35 H 0.211 0.789 36 H 0.246 0.754 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.392 -22.334 -5.790 26.190 hybrid contribution 0.680 0.348 0.488 0.907 sum 13.072 -21.987 -5.302 26.123 Atomic orbital electron populations 1.69917 1.06004 1.27638 1.49346 1.24898 0.94981 0.99359 0.94443 0.86344 0.79660 0.82211 0.78381 1.20264 1.20829 1.19785 1.21243 0.93535 0.89671 1.52735 0.92065 1.19795 0.85685 0.79854 0.99987 1.49467 1.35796 1.27721 0.98801 1.76949 1.11460 1.08079 1.09362 1.23369 0.99058 0.97843 0.92345 1.19610 1.12635 1.07970 0.95347 1.18936 0.91077 0.89857 0.88517 1.67518 1.29710 1.30573 0.99978 1.24429 0.85256 0.83950 0.99210 1.67997 1.26752 1.25684 1.14359 1.17905 0.84112 0.83892 0.88269 1.44458 1.46209 1.33613 1.08942 1.19708 0.89260 0.89646 0.92202 0.87732 1.21831 0.95876 0.99444 0.99393 1.21490 0.98610 0.95134 1.00033 1.20490 0.90999 0.98018 1.02265 1.19579 0.95534 0.92615 0.99666 1.21052 0.93585 0.98669 1.01596 1.21060 0.95627 0.96722 1.00159 1.21132 0.99763 0.93314 1.00584 1.21588 0.92927 1.00218 0.96520 1.19958 0.94770 0.93667 1.00824 0.92257 0.92262 0.92804 0.80109 0.78874 0.75376 0.90561 0.91045 0.91112 0.90911 0.90761 0.90700 0.86508 0.86441 0.86431 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.75 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.25 9.39 -34.44 -0.32 -15.58 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.26 7.04 6.19 -5.19 -0.03 7.01 16 10 N -0.33 -7.91 3.63 -61.65 -0.22 -8.14 16 11 N -0.24 -5.18 12.45 30.80 0.38 -4.80 16 12 C 0.07 1.16 11.87 -17.11 -0.20 0.96 16 13 C -0.34 -6.02 6.14 -106.82 -0.66 -6.68 16 14 C 0.36 7.94 8.04 -156.24 -1.26 6.68 16 15 N -0.55 -11.49 10.47 -13.97 -0.15 -11.63 16 16 C 0.37 5.99 12.24 -92.12 -1.13 4.87 16 17 N -0.62 -9.40 7.51 -13.62 -0.10 -9.51 16 18 C 0.51 7.60 6.03 -154.85 -0.93 6.67 16 19 N -0.70 -7.70 4.93 -54.89 -0.27 -7.97 16 20 C 0.20 1.92 2.60 -69.26 -0.18 1.74 16 21 H 0.10 1.18 7.53 -51.93 -0.39 0.78 16 22 C -0.13 -0.88 5.43 -26.70 -0.15 -1.03 16 23 C -0.11 -0.69 5.98 -26.70 -0.16 -0.85 16 24 C -0.08 -0.53 5.67 -28.05 -0.16 -0.69 16 25 C -0.07 -0.68 5.74 -104.61 -0.60 -1.29 16 26 C -0.13 -1.20 9.61 -39.45 -0.38 -1.58 16 27 C -0.12 -1.16 10.05 -39.69 -0.40 -1.56 16 28 C -0.13 -1.49 10.05 -39.69 -0.40 -1.89 16 29 C -0.09 -1.18 9.02 -39.44 -0.36 -1.54 16 30 C -0.09 -0.98 5.55 -104.61 -0.58 -1.56 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 33 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.18 2.08 8.06 -52.48 -0.42 1.65 16 35 H 0.19 2.43 8.06 -52.48 -0.42 2.01 16 36 H 0.41 3.66 8.47 -40.82 -0.35 3.31 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.45 8.10 -51.92 -0.42 0.03 16 39 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.12 0.82 8.05 -52.49 -0.42 0.39 16 44 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 46 H 0.13 1.91 4.37 -52.48 -0.23 1.68 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -32.94 379.99 -12.91 -45.85 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.00 Total: 3.37 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -7.99 Total: -4.53 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: 0.38 Total: -67.13 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.94 -12.91 -45.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065542876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.878 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds