Wall clock time and date at job start Tue Mar 31 2020 06:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40064 * 125.87570 * 90.02332 * 10 9 7 12 12 C 1.30255 * 109.69358 * 179.97438 * 11 10 9 13 13 C 1.41166 * 108.47395 * 0.02562 * 12 11 10 14 14 C 1.36323 * 125.87070 * 269.71454 * 10 9 7 15 15 N 1.33200 * 134.61795 * 0.78403 * 14 10 9 16 16 C 1.31504 * 120.68664 * 179.54574 * 15 14 10 17 17 N 1.32119 * 122.64451 * 359.70726 * 16 15 14 18 18 C 1.32861 * 121.19776 * 359.97438 * 17 16 15 19 19 N 1.38101 * 120.81809 * 179.97438 * 18 17 16 20 20 C 1.46502 * 120.00065 * 0.02562 * 19 18 17 21 21 H 1.09006 * 109.24540 * 325.53446 * 20 19 18 22 22 C 1.52732 * 109.25697 * 206.10588 * 20 19 18 23 23 C 1.53325 * 108.39012 * 188.68254 * 22 20 19 24 24 C 1.52733 * 108.36841 * 69.90998 * 23 22 20 25 25 C 1.50637 * 110.57558 * 308.88435 * 24 23 22 26 26 C 1.38910 * 117.73930 * 197.52580 * 25 24 23 27 27 C 1.37941 * 120.54007 * 180.33318 * 26 25 24 28 28 C 1.38255 * 119.76920 * 359.97110 * 27 26 25 29 29 C 1.37933 * 119.77767 * 359.89976 * 28 27 26 30 30 C 1.37651 * 122.57050 * 17.63991 * 25 24 23 31 31 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 33 33 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 34 34 H 1.07999 * 125.76318 * 179.97438 * 12 11 10 35 35 H 1.07999 * 118.67462 * 179.67837 * 16 15 14 36 36 H 0.97005 * 120.00756 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.68027 * 308.41063 * 22 20 19 38 38 H 1.09003 * 109.67977 * 68.95454 * 22 20 19 39 39 H 1.09001 * 109.68520 * 310.18626 * 23 22 20 40 40 H 1.09004 * 109.68282 * 189.63107 * 23 22 20 41 41 H 1.09003 * 109.25348 * 188.60090 * 24 23 22 42 42 H 1.08994 * 109.25715 * 69.16744 * 24 23 22 43 43 H 1.08004 * 119.73225 * 0.31242 * 26 25 24 44 44 H 1.07997 * 120.11169 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.11324 * 179.86977 * 28 27 26 46 46 H 1.07990 * 119.73117 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7358 -4.2419 1.1220 12 6 3.5484 -5.1914 0.7548 13 6 3.5858 -5.2275 -0.6559 14 6 2.7178 -4.2185 -1.1176 15 7 2.5799 -4.0412 -2.4305 16 6 3.2330 -4.8007 -3.2825 17 7 4.0531 -5.7620 -2.8969 18 6 4.2624 -6.0127 -1.6091 19 7 5.1210 -7.0199 -1.2148 20 6 5.8148 -7.8270 -2.2215 21 1 5.1649 -7.9585 -3.0868 22 6 6.1465 -9.1952 -1.6292 23 6 7.0568 -9.9402 -2.6126 24 6 8.4215 -9.2544 -2.6193 25 6 8.2677 -7.7715 -2.8353 26 6 9.3892 -7.0568 -3.2364 27 6 9.3154 -5.6952 -3.4442 28 6 8.1155 -5.0356 -3.2526 29 6 7.0000 -5.7440 -2.8569 30 6 7.0721 -7.1155 -2.6484 31 1 -0.4850 0.8401 -0.0004 32 1 0.6242 -2.5609 0.8844 33 1 0.6244 -2.5529 -0.8956 34 1 4.1009 -5.8407 1.4177 35 1 3.0929 -4.6320 -4.3400 36 1 5.2649 -7.1931 -0.2712 37 1 6.6611 -9.0679 -0.6768 38 1 5.2278 -9.7620 -1.4776 39 1 6.6236 -9.9058 -3.6122 40 1 7.1685 -10.9772 -2.2959 41 1 9.0302 -9.6732 -3.4207 42 1 8.9163 -9.4291 -1.6640 43 1 10.3269 -7.5714 -3.3864 44 1 10.1918 -5.1463 -3.7556 45 1 8.0518 -3.9693 -3.4116 46 1 6.0631 -5.2282 -2.7078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065542879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:01 Heat of formation + Delta-G solvation = 139.126665 kcal Electronic energy + Delta-G solvation = -29986.156271 eV Core-core repulsion = 26069.799574 eV Total energy + Delta-G solvation = -3916.356697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.160 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.48798 -40.33603 -38.41921 -36.89888 -35.48403 -33.75583 -32.52504 -31.32734 -31.30044 -30.38094 -29.61482 -28.03212 -27.15282 -24.07522 -24.00456 -23.21923 -22.86496 -22.48337 -21.68552 -20.12100 -19.67892 -17.87533 -17.49715 -16.79862 -16.59717 -16.35984 -15.85507 -15.54445 -15.20541 -15.00404 -14.56300 -14.27887 -14.20494 -14.02556 -13.76730 -13.61636 -13.36099 -13.19253 -12.84813 -12.76781 -12.29638 -12.14537 -11.90587 -11.66263 -11.51799 -11.47527 -11.27316 -11.06529 -10.98158 -10.77249 -10.74454 -10.54659 -10.28135 -10.09883 -9.85368 -9.27275 -8.79937 -8.73840 -8.62115 -8.58533 -8.24451 -7.64235 -6.21610 -4.28153 1.24014 1.30805 1.36250 1.90831 2.92529 3.02324 3.11747 3.26688 3.29694 3.34697 3.73896 4.29552 4.34041 4.35243 4.46170 4.48588 4.66044 4.73299 4.74155 4.82560 4.95594 4.99679 5.07562 5.13822 5.15979 5.21788 5.25503 5.34178 5.44220 5.49598 5.56766 5.64913 5.69319 5.71276 5.78026 5.92962 5.99524 6.05913 6.31974 6.42664 6.51979 6.59169 6.67814 6.90640 7.00336 7.02981 7.10071 7.22696 7.49503 7.71931 7.89845 7.91975 8.22066 8.71360 8.81245 9.36795 10.86607 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.002750 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.315422 B =10179.949282 C =11105.080180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.069 3.931 13 C -0.338 4.338 14 C 0.364 3.636 15 N -0.553 5.553 16 C 0.365 3.635 17 N -0.617 5.617 18 C 0.510 3.490 19 N -0.700 5.700 20 C 0.197 3.803 21 H 0.105 0.895 22 C -0.127 4.127 23 C -0.115 4.115 24 C -0.081 4.081 25 C -0.074 4.074 26 C -0.131 4.131 27 C -0.117 4.117 28 C -0.129 4.129 29 C -0.094 4.094 30 C -0.092 4.092 31 H 0.268 0.732 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.182 0.818 35 H 0.195 0.805 36 H 0.410 0.590 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.516 -20.682 -5.918 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.058 5.058 12 C -0.126 4.126 13 C -0.355 4.355 14 C 0.116 3.884 15 N -0.278 5.278 16 C 0.072 3.928 17 N -0.348 5.348 18 C 0.258 3.742 19 N -0.332 5.332 20 C 0.092 3.908 21 H 0.122 0.878 22 C -0.165 4.165 23 C -0.153 4.153 24 C -0.118 4.118 25 C -0.074 4.074 26 C -0.149 4.149 27 C -0.135 4.135 28 C -0.147 4.147 29 C -0.112 4.112 30 C -0.093 4.093 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.199 0.801 35 H 0.211 0.789 36 H 0.246 0.754 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.505 -19.610 -5.876 25.680 hybrid contribution 1.038 0.645 0.495 1.319 sum 16.543 -18.965 -5.380 25.735 Atomic orbital electron populations 1.69910 1.06004 1.27744 1.49251 1.24893 0.94980 0.99340 0.94425 0.86406 0.79452 0.81876 0.78881 1.19952 1.20875 1.20015 1.21206 0.93506 0.89682 1.52874 0.92113 1.19787 0.85683 0.79827 0.99979 1.49467 1.35959 1.27565 0.98793 1.76952 1.11494 1.07930 1.09472 1.23370 0.99028 0.97918 0.92307 1.19611 1.12493 1.08106 0.95337 1.18950 0.91097 0.89859 0.88512 1.67522 1.29422 1.30937 0.99895 1.24427 0.85118 0.84116 0.99183 1.67992 1.26687 1.25605 1.14506 1.17902 0.83899 0.84118 0.88261 1.44462 1.45663 1.34146 1.08953 1.19705 0.90629 0.88316 0.92114 0.87758 1.21831 1.00552 0.94706 0.99433 1.21491 0.94841 0.98920 0.99999 1.20486 0.97841 0.91158 1.02271 1.19566 0.92711 0.95415 0.99758 1.21053 0.97864 0.94359 1.01659 1.21065 0.97750 0.94587 1.00134 1.21148 0.93157 0.99991 1.00431 1.21594 0.99215 0.93936 0.96442 1.19950 0.94254 0.94162 1.00953 0.92201 0.92831 0.92262 0.80110 0.78876 0.75376 0.91049 0.90593 0.91117 0.90928 0.90781 0.90712 0.86515 0.86434 0.86387 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.29 9.39 -34.44 -0.32 -15.61 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.26 7.05 6.19 -5.20 -0.03 7.02 16 10 N -0.33 -7.91 3.63 -61.64 -0.22 -8.13 16 11 N -0.24 -5.18 12.45 30.80 0.38 -4.79 16 12 C 0.07 1.16 11.87 -17.11 -0.20 0.95 16 13 C -0.34 -6.02 6.14 -106.81 -0.66 -6.67 16 14 C 0.36 7.93 8.04 -156.22 -1.26 6.68 16 15 N -0.55 -11.50 10.47 -13.96 -0.15 -11.64 16 16 C 0.37 6.00 12.24 -92.12 -1.13 4.87 16 17 N -0.62 -9.41 7.50 -13.63 -0.10 -9.51 16 18 C 0.51 7.60 6.03 -154.86 -0.93 6.67 16 19 N -0.70 -7.70 4.93 -54.89 -0.27 -7.97 16 20 C 0.20 1.93 2.60 -69.25 -0.18 1.75 16 21 H 0.10 1.16 7.54 -51.93 -0.39 0.77 16 22 C -0.13 -0.87 5.43 -26.70 -0.15 -1.01 16 23 C -0.11 -0.69 5.98 -26.70 -0.16 -0.85 16 24 C -0.08 -0.54 5.67 -28.05 -0.16 -0.70 16 25 C -0.07 -0.71 5.74 -104.62 -0.60 -1.31 16 26 C -0.13 -1.26 9.61 -39.44 -0.38 -1.64 16 27 C -0.12 -1.23 10.05 -39.68 -0.40 -1.62 16 28 C -0.13 -1.58 10.05 -39.69 -0.40 -1.98 16 29 C -0.09 -1.23 9.01 -39.44 -0.36 -1.59 16 30 C -0.09 -1.02 5.55 -104.62 -0.58 -1.60 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 32 H 0.05 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 34 H 0.18 2.08 8.06 -52.49 -0.42 1.65 16 35 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 36 H 0.41 3.66 8.47 -40.82 -0.35 3.31 16 37 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.12 0.86 8.05 -52.48 -0.42 0.44 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 46 H 0.13 2.01 4.37 -52.49 -0.23 1.78 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -32.95 379.98 -12.91 -45.85 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.00 Total: 3.68 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -7.99 Total: -4.86 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: 0.38 Total: -67.15 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.95 -12.91 -45.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065542879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.978 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds