Wall clock time and date at job start Tue Mar 31 2020 05:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47474 * 2 1 4 4 C 1.46497 * 120.00507 * 274.65158 * 3 2 1 5 5 C 1.50693 * 109.47183 * 274.99970 * 4 3 2 6 6 H 1.08001 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00281 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99962 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00488 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47118 * 90.00027 * 9 7 5 11 11 H 1.48497 * 109.47341 * 210.00521 * 9 7 5 12 12 H 1.48506 * 109.46695 * 330.00718 * 9 7 5 13 13 S 1.65605 * 119.99511 * 94.65197 * 3 2 1 14 14 O 1.42104 * 106.40004 * 195.99901 * 13 3 2 15 15 O 1.42102 * 106.40211 * 328.91571 * 13 3 2 16 16 C 1.76200 * 107.22054 * 82.45785 * 13 3 2 17 17 C 1.38228 * 119.99250 * 346.24250 * 16 13 3 18 18 C 1.38332 * 119.98800 * 179.97438 * 17 16 13 19 19 Cl 1.73600 * 120.01376 * 179.97438 * 18 17 16 20 20 C 1.38373 * 119.97127 * 359.97438 * 18 17 16 21 21 C 1.38196 * 119.98585 * 0.02562 * 20 18 17 22 22 C 1.38217 * 119.99026 * 165.96339 * 16 13 3 23 23 N 1.48017 * 119.98930 * 0.02562 * 22 16 13 24 24 O 1.21804 * 119.99768 * 187.12466 * 23 22 16 25 25 O 1.21801 * 120.00359 * 7.12266 * 23 22 16 26 26 H 1.09003 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47048 * 299.99411 * 1 2 3 28 28 H 1.08997 * 109.47374 * 59.99707 * 1 2 3 29 29 H 1.09007 * 109.47099 * 240.00039 * 2 1 3 30 30 H 1.09005 * 109.47298 * 120.00611 * 2 1 3 31 31 H 1.09006 * 109.46747 * 34.99576 * 4 3 2 32 32 H 1.08997 * 109.47229 * 154.99532 * 4 3 2 33 33 H 0.96993 * 120.00103 * 179.97438 * 8 7 5 34 34 H 1.08006 * 120.00931 * 359.95717 * 17 16 13 35 35 H 1.07998 * 120.00446 * 180.02562 * 20 18 17 36 36 H 1.08004 * 119.99142 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1656 2.1062 -1.2645 5 6 3.5056 1.7850 -1.8745 6 1 4.1802 1.1089 -1.3705 7 6 3.8703 2.3544 -3.0761 8 7 3.0489 3.1782 -3.6896 9 14 5.5316 1.9569 -3.8320 10 1 5.4019 0.7717 -4.7171 11 1 6.0046 3.1188 -4.6267 12 1 6.5091 1.6642 -2.7530 13 16 2.4040 2.1229 1.4295 14 8 2.4727 3.5152 1.1534 15 8 1.5437 1.5675 2.4147 16 6 4.0380 1.6188 1.8546 17 6 4.6236 0.5509 1.2010 18 6 5.9067 0.1555 1.5344 19 17 6.6426 -1.1861 0.7144 20 6 6.6032 0.8298 2.5217 21 6 6.0166 1.8973 3.1744 22 6 4.7360 2.2950 2.8374 23 7 4.1103 3.4420 3.5330 24 8 4.7671 4.1183 4.3044 25 8 2.9389 3.7097 3.3341 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3730 1.8058 -1.9499 32 1 2.0984 3.1781 -1.0787 33 1 3.3057 3.5791 -4.5347 34 1 4.0796 0.0250 0.4303 35 1 7.6050 0.5218 2.7822 36 1 6.5603 2.4240 3.9448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065626654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:54 Heat of formation + Delta-G solvation = -43.443536 kcal Electronic energy + Delta-G solvation = -27675.236626 eV Core-core repulsion = 23509.608069 eV Total energy + Delta-G solvation = -4165.628557 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.37404 -39.74194 -37.01554 -36.89355 -36.66991 -36.29438 -35.27831 -32.84525 -32.16129 -32.02726 -30.08802 -26.84792 -26.69079 -24.05762 -23.42532 -22.84490 -21.78977 -20.02482 -18.85494 -18.51229 -17.70773 -17.53008 -17.14769 -16.51702 -16.01972 -15.84670 -15.68854 -14.88801 -14.64381 -14.23512 -13.91567 -13.59564 -13.48071 -13.05106 -12.73109 -12.25821 -12.18309 -12.12790 -11.85802 -11.74190 -11.67395 -11.55817 -11.48567 -11.31388 -11.17066 -11.07083 -10.93719 -10.84773 -10.60188 -10.49654 -10.19368 -10.04240 -9.91091 -9.60086 -8.60734 -8.30486 -6.22979 -4.31177 -0.59574 0.30615 0.67894 1.04551 1.11305 1.51892 2.67073 3.15378 3.21439 3.24120 3.29144 3.87194 4.04893 4.23060 4.25226 4.40219 4.49955 4.94063 4.99821 5.09073 5.12858 5.14254 5.20793 5.36030 5.62213 5.65783 5.73956 5.95241 6.16150 6.22180 6.49287 6.59172 7.16872 7.26055 7.46406 7.48305 7.70676 7.98558 8.70375 9.35589 10.85083 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.006404 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.952499 B = 4371.194561 C = 5521.300519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.981 5.981 4 C 0.241 3.759 5 C -0.550 4.550 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.273 1.273 13 S 2.689 3.311 14 O -0.921 6.921 15 O -0.949 6.949 16 C -0.596 4.596 17 C -0.010 4.010 18 C -0.008 4.008 19 Cl -0.032 7.032 20 C -0.072 4.072 21 C -0.057 4.057 22 C 0.040 3.960 23 N 0.016 4.984 24 O -0.128 6.128 25 O -0.143 6.143 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.267 0.733 34 H 0.174 0.826 35 H 0.163 0.837 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 -9.286 10.440 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 N -0.823 5.823 4 C 0.120 3.880 5 C -0.590 4.590 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.198 1.198 13 S 2.768 3.232 14 O -0.910 6.910 15 O -0.939 6.939 16 C -0.675 4.675 17 C -0.029 4.029 18 C -0.036 4.036 19 Cl -0.003 7.003 20 C -0.092 4.092 21 C -0.077 4.077 22 C -0.044 4.044 23 N 0.537 4.463 24 O -0.350 6.350 25 O -0.356 6.356 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.191 0.809 35 H 0.181 0.819 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.559 -9.309 10.327 14.974 hybrid contribution 1.745 -0.369 -0.664 1.903 sum 7.304 -9.679 9.662 15.504 Atomic orbital electron populations 1.22204 0.95961 1.01793 1.03076 1.21221 0.94878 0.82401 1.02298 1.57720 1.77036 1.23611 1.23941 1.19367 0.97594 0.92807 0.78261 1.21479 1.02125 1.28811 1.06542 0.92269 1.24901 0.97142 0.94597 0.96792 1.69911 1.35957 1.29273 1.16845 0.86654 0.84047 0.78238 0.79538 1.20306 1.20859 1.19796 1.02924 0.73027 0.74276 0.72932 1.93624 1.85080 1.27960 1.84363 1.93565 1.60811 1.80329 1.59183 1.31719 1.29448 1.03646 1.02667 1.21072 0.93404 0.92561 0.95886 1.21426 0.94269 0.92424 0.95467 1.98429 1.81821 1.42718 1.77285 1.21281 1.00795 0.93511 0.93575 1.21059 0.91587 0.95676 0.99373 1.20550 0.95540 0.90542 0.97738 1.43644 1.01300 1.01355 1.00003 1.94493 1.62933 1.47488 1.30096 1.94597 0.99655 1.74121 1.67196 0.92033 0.91976 0.91682 0.89395 0.92003 0.93321 0.92485 0.92351 0.80883 0.81904 0.81290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 37.15 0.38 -2.08 16 2 C 0.12 1.83 4.97 -4.05 -0.02 1.81 16 3 N -0.98 -19.13 2.02 -115.67 -0.23 -19.37 16 4 C 0.24 5.65 5.40 -5.20 -0.03 5.63 16 5 C -0.55 -13.63 9.38 -34.44 -0.32 -13.95 16 6 H 0.06 1.36 6.22 -52.49 -0.33 1.03 16 7 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 8 N -0.88 -24.43 13.29 55.43 0.74 -23.69 16 9 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 13 S 2.69 55.15 3.92 -107.50 -0.42 54.73 16 14 O -0.92 -22.12 13.95 -67.16 -0.94 -23.05 16 15 O -0.95 -19.65 16.52 -64.39 -1.06 -20.71 16 16 C -0.60 -10.56 5.83 -39.59 -0.23 -10.79 16 17 C -0.01 -0.15 8.70 -39.55 -0.34 -0.49 16 18 C -0.01 -0.10 6.32 -39.50 -0.25 -0.35 16 19 Cl -0.03 -0.36 28.96 -51.86 -1.50 -1.86 16 20 C -0.07 -0.75 9.83 -39.55 -0.39 -1.14 16 21 C -0.06 -0.68 9.56 -39.59 -0.38 -1.06 16 22 C 0.04 0.66 6.81 -79.95 -0.54 0.12 16 23 N 0.02 0.30 4.45 33.96 0.15 0.45 16 24 O -0.13 -2.16 18.47 -29.46 -0.54 -2.70 16 25 O -0.14 -3.05 13.75 -39.36 -0.54 -3.59 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.94 7.89 -51.93 -0.41 0.54 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.28 8.11 -51.92 -0.42 0.86 16 30 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 31 H 0.05 1.16 8.11 -51.93 -0.42 0.74 16 32 H 0.06 1.50 6.87 -51.93 -0.36 1.14 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.17 2.53 5.35 -52.48 -0.28 2.25 16 35 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.17 1.46 7.63 -52.48 -0.40 1.06 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -31.61 339.18 -9.91 -41.51 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -3.42 Total: -1.23 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.22 Total: -20.58 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.65 Total: -42.61 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -3.09 Total: -50.06 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 55.15 SS G_CDS: -0.42 Total: 54.73 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.61 -9.91 -41.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065626654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.931 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds