Wall clock time and date at job start Tue Mar 31 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86794 * 120.00132 * 2 1 4 4 H 1.48505 * 109.47365 * 270.00207 * 3 2 1 5 5 H 1.48504 * 109.47275 * 30.00223 * 3 2 1 6 6 H 1.48500 * 109.47373 * 150.00160 * 3 2 1 7 7 C 1.38652 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00655 * 359.97438 * 7 2 1 9 9 O 1.34834 * 120.00189 * 179.97438 * 7 2 1 10 10 C 1.35746 * 117.00340 * 185.05311 * 9 7 2 11 11 C 1.38882 * 120.07145 * 174.73672 * 10 9 7 12 12 C 1.38099 * 119.93206 * 180.25590 * 11 10 9 13 13 C 1.38295 * 120.06865 * 359.47410 * 12 11 10 14 14 C 1.50701 * 119.93297 * 180.25412 * 13 12 11 15 15 N 1.46503 * 109.46929 * 89.99901 * 14 13 12 16 16 C 1.38451 * 119.99618 * 180.02562 * 15 14 13 17 17 N 1.32482 * 119.20711 * 359.73383 * 16 15 14 18 18 C 1.32278 * 120.75086 * 179.75956 * 17 16 15 19 19 C 1.38686 * 119.18386 * 0.50374 * 18 17 16 20 20 Br 1.89102 * 120.72904 * 179.73121 * 19 18 17 21 21 C 1.38678 * 118.54049 * 359.74446 * 19 18 17 22 22 N 1.32281 * 119.18321 * 0.02562 * 21 19 18 23 23 C 1.38308 * 120.13808 * 0.27516 * 13 12 11 24 24 C 1.38100 * 120.06790 * 359.97438 * 23 13 12 25 25 H 0.96997 * 119.99989 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.03090 * 0.02562 * 11 10 9 27 27 H 1.08000 * 119.96243 * 179.74600 * 12 11 10 28 28 H 1.08996 * 109.46994 * 209.99646 * 14 13 12 29 29 H 1.09003 * 109.46785 * 330.00247 * 14 13 12 30 30 H 0.96997 * 119.99855 * 359.97438 * 15 14 13 31 31 H 1.07991 * 120.41127 * 180.24627 * 18 17 16 32 32 H 1.07998 * 120.41114 * 179.97438 * 21 19 18 33 33 H 1.07997 * 119.96346 * 180.02562 * 23 13 12 34 34 H 1.07996 * 120.03027 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1362 -0.0005 9 8 3.3572 -1.2009 -0.0011 10 6 3.9734 -2.4057 -0.1081 11 6 5.3556 -2.4724 -0.2252 12 6 5.9791 -3.6993 -0.3393 13 6 5.2295 -4.8614 -0.3260 14 6 5.9135 -6.1989 -0.4449 15 7 6.2544 -6.6935 0.8913 16 6 6.8946 -7.9126 1.0357 17 7 7.1867 -8.6213 -0.0449 18 6 7.8021 -9.7878 0.0573 19 6 8.1319 -10.2705 1.3149 20 35 9.0052 -11.9362 1.5121 21 6 7.8067 -9.5051 2.4247 22 7 7.1953 -8.3450 2.2514 23 6 3.8532 -4.7986 -0.2043 24 6 3.2234 -3.5744 -0.0950 25 1 -0.4850 0.8400 0.0004 26 1 5.9420 -1.5654 -0.2308 27 1 7.0536 -3.7516 -0.4345 28 1 5.2448 -6.9067 -0.9346 29 1 6.8234 -6.0904 -1.0352 30 1 6.0323 -6.1666 1.6748 31 1 8.0412 -10.3591 -0.8274 32 1 8.0490 -9.8522 3.4183 33 1 3.2706 -5.7079 -0.1938 34 1 2.1487 -3.5261 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067371700.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:19 Heat of formation + Delta-G solvation = 59.982777 kcal Electronic energy + Delta-G solvation = -20425.891636 eV Core-core repulsion = 16985.283527 eV Total energy + Delta-G solvation = -3440.608109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 349.017 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20832 -39.39697 -37.43269 -35.71690 -34.01381 -32.79386 -32.42912 -30.56596 -30.36719 -28.74681 -26.13384 -25.17186 -24.41113 -22.88205 -22.23280 -20.66173 -18.56591 -18.02090 -17.87323 -17.37061 -15.87056 -15.66938 -15.24474 -14.99854 -14.64203 -14.36202 -14.19959 -13.92636 -13.83216 -13.49916 -13.33361 -12.79776 -12.37941 -12.27257 -11.71896 -11.56721 -11.32802 -11.18685 -10.99703 -10.88016 -10.84725 -10.82410 -10.26188 -10.09569 -9.51811 -9.39912 -8.98953 -8.43333 -8.22631 -7.54554 -6.53190 -4.20231 0.68885 0.82581 1.26710 1.84160 1.98412 2.87568 3.15151 3.18880 3.32519 3.52855 3.84817 4.13953 4.22373 4.29681 4.53697 4.63807 4.70017 4.98671 5.03934 5.27072 5.32390 5.50329 5.59918 5.65878 5.86205 5.98506 6.19261 6.40142 6.47353 6.62711 6.79094 6.84310 7.06701 7.13376 7.25605 7.45301 7.66925 7.90533 8.03087 8.81062 9.41069 10.53788 Molecular weight = 349.02amu Principal moments of inertia in cm(-1) A = 0.050704 B = 0.001637 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.096562 B =17095.801853 C =17203.452618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.211 6.211 10 C 0.169 3.831 11 C -0.196 4.196 12 C -0.053 4.053 13 C -0.212 4.212 14 C 0.192 3.808 15 N -0.678 5.678 16 C 0.574 3.426 17 N -0.560 5.560 18 C 0.231 3.769 19 C -0.281 4.281 20 Br -0.035 7.035 21 C 0.231 3.769 22 N -0.565 5.565 23 C -0.049 4.049 24 C -0.225 4.225 25 H 0.281 0.719 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.418 0.582 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.111 0.889 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.871 -22.444 2.134 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.115 6.115 10 C 0.115 3.885 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.213 4.213 14 C 0.069 3.931 15 N -0.311 5.311 16 C 0.218 3.782 17 N -0.284 5.284 18 C 0.060 3.940 19 C -0.369 4.369 20 Br 0.048 6.952 21 C 0.060 3.940 22 N -0.288 5.288 23 C -0.068 4.068 24 C -0.244 4.244 25 H 0.091 0.909 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.256 0.744 31 H 0.190 0.810 32 H 0.190 0.810 33 H 0.129 0.871 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.460 -21.594 1.905 27.835 hybrid contribution 0.198 0.407 0.371 0.585 sum 17.658 -21.188 2.276 27.675 Atomic orbital electron populations 1.69642 1.05606 1.28736 1.47061 1.24500 0.95065 0.98974 0.95424 0.86166 0.80323 0.81270 0.79071 1.19761 1.20646 1.18322 1.20794 0.76711 0.96758 1.52476 0.87457 1.83573 1.22823 1.25842 1.79265 1.19192 0.91742 0.85510 0.92037 1.20212 0.91957 0.97947 1.11382 1.20531 0.98385 0.91234 0.97024 1.19233 0.93774 0.93280 1.15054 1.20059 0.98997 0.92272 0.81739 1.44897 1.59270 1.16082 1.10879 1.19600 0.86682 0.87413 0.84519 1.68121 1.19860 1.08414 1.31958 1.22977 0.85986 0.89218 0.95828 1.23170 1.15852 0.99053 0.98862 1.96692 1.77483 1.22853 1.98159 1.22943 0.86113 0.86525 0.98436 1.68096 1.19920 1.16579 1.24221 1.20703 0.93331 0.96887 0.95843 1.21280 1.01303 0.91742 1.10072 0.90854 0.86297 0.86762 0.91116 0.91142 0.74363 0.80987 0.81015 0.87086 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.52 13.96 55.48 0.77 -23.75 16 2 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 3 Si 0.91 21.00 28.62 -169.99 -4.86 16.14 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -10.65 9.95 30.89 0.31 -10.34 16 8 H 0.11 2.97 5.44 -52.48 -0.29 2.69 16 9 O -0.21 -5.33 8.59 0.05 0.00 -5.33 16 10 C 0.17 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.20 -3.60 9.99 -39.39 -0.39 -3.99 16 12 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 13 C -0.21 -3.14 5.25 -104.57 -0.55 -3.69 16 14 C 0.19 2.39 5.77 -5.19 -0.03 2.36 16 15 N -0.68 -8.38 5.70 -63.48 -0.36 -8.74 16 16 C 0.57 7.23 8.43 -322.77 -2.72 4.51 16 17 N -0.56 -6.64 9.58 -13.90 -0.13 -6.77 16 18 C 0.23 2.16 11.08 -17.19 -0.19 1.97 16 19 C -0.28 -2.48 6.27 -39.25 -0.25 -2.72 16 20 Br -0.03 -0.25 33.76 -68.01 -2.30 -2.55 16 21 C 0.23 2.19 11.08 -17.20 -0.19 2.00 16 22 N -0.57 -6.80 10.46 -13.90 -0.15 -6.95 16 23 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 24 C -0.22 -4.53 9.17 -39.40 -0.36 -4.89 16 25 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 27 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 28 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 29 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.42 5.14 8.58 -40.82 -0.35 4.79 16 31 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.14 2.88 5.64 -52.49 -0.30 2.59 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -28.63 324.92 -10.65 -39.28 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.02 Total: 5.89 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -5.50 Total: -12.11 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.13 Total: -46.21 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: 0.00 Total: -5.33 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.86 Total: 16.14 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -2.30 Total: -2.55 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.63 -10.65 -39.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067371700.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.264 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds