Wall clock time and date at job start Tue Mar 31 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00634 * 2 1 4 4 C 1.50697 * 109.47463 * 180.02562 * 3 2 1 5 5 C 1.33843 * 122.22414 * 89.97348 * 4 3 2 6 6 C 1.46786 * 124.67200 * 0.02562 * 5 4 3 7 7 O 1.21704 * 119.99972 * 8.44747 * 6 5 4 8 8 N 1.34775 * 120.00016 * 188.17091 * 6 5 4 9 9 C 1.36828 * 120.00420 * 185.08461 * 8 6 5 10 10 H 1.07998 * 119.99727 * 327.19844 * 9 8 6 11 11 C 1.39042 * 119.99915 * 147.18822 * 9 8 6 12 12 N 1.31372 * 120.00273 * 354.88109 * 11 9 8 13 13 Si 1.86805 * 119.99682 * 174.87202 * 11 9 8 14 14 H 1.48502 * 109.47213 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46869 * 120.00504 * 13 11 9 16 16 H 1.48498 * 109.47096 * 240.00151 * 13 11 9 17 17 C 1.46503 * 119.99807 * 5.08553 * 8 6 5 18 18 C 1.52995 * 117.50146 * 134.64446 * 17 8 6 19 19 C 1.52998 * 117.49988 * 66.01744 * 17 8 6 20 20 S 1.75482 * 110.65241 * 180.26375 * 5 4 3 21 21 C 1.76020 * 91.62745 * 359.68074 * 20 5 4 22 22 C 1.39854 * 130.49373 * 180.02562 * 21 20 5 23 23 C 1.37417 * 120.39085 * 180.34870 * 22 21 20 24 24 C 1.38922 * 120.22651 * 359.95397 * 23 22 21 25 25 C 1.37166 * 120.51590 * 0.04861 * 24 23 22 26 26 F 1.35101 * 119.84068 * 180.02562 * 25 24 23 27 27 C 1.40033 * 109.54762 * 0.31443 * 21 20 5 28 28 H 1.09002 * 109.47420 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47130 * 300.00828 * 1 2 3 30 30 H 1.09009 * 109.46999 * 60.00244 * 1 2 3 31 31 H 1.09003 * 109.47161 * 59.99227 * 3 2 1 32 32 H 1.09008 * 109.46775 * 299.99778 * 3 2 1 33 33 H 0.97007 * 119.99760 * 185.01964 * 12 11 9 34 34 H 1.09003 * 115.55158 * 280.35142 * 17 8 6 35 35 H 1.08999 * 117.49702 * 359.97438 * 18 17 8 36 36 H 1.09001 * 117.50491 * 145.02228 * 18 17 8 37 37 H 1.09007 * 117.50071 * 214.97695 * 19 17 8 38 38 H 1.08997 * 117.50115 * 359.97438 * 19 17 8 39 39 H 1.07993 * 119.80519 * 0.34542 * 22 21 20 40 40 H 1.07996 * 119.88820 * 179.97438 * 23 22 21 41 41 H 1.08003 * 119.74250 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.2235 1.1296 -1.1332 6 6 3.6488 1.1753 -2.4831 7 8 2.4671 1.4247 -2.6332 8 7 4.4309 0.9465 -3.5566 9 6 3.9208 1.0909 -4.8180 10 1 2.8827 0.8632 -5.0100 11 6 4.7390 1.5311 -5.8525 12 7 5.9732 1.9041 -5.6007 13 14 4.0831 1.5918 -7.6006 14 1 2.6742 1.1230 -7.6173 15 1 4.1461 2.9872 -8.1047 16 1 4.9077 0.7140 -8.4694 17 6 5.8273 0.5431 -3.3729 18 6 6.3466 -0.6143 -4.2282 19 6 6.0900 -0.8222 -2.7342 20 16 5.9369 0.9863 -0.7819 21 6 5.6352 1.0175 0.9519 22 6 6.5236 0.9467 2.0297 23 6 6.0545 0.9832 3.3209 24 6 4.6916 1.0919 3.5670 25 6 3.7996 1.1630 2.5274 26 9 2.4771 1.2690 2.7824 27 6 4.2589 1.1271 1.1862 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 6.5204 2.2794 -6.3083 34 1 6.5230 1.3495 -3.1409 35 1 5.6493 -1.0759 -4.9273 36 1 7.3842 -0.5695 -4.5592 37 1 6.9589 -0.9141 -2.0824 38 1 5.2240 -1.4200 -2.4503 39 1 7.5845 0.8628 1.8463 40 1 6.7477 0.9275 4.1471 41 1 4.3315 1.1203 4.5848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:15 Heat of formation + Delta-G solvation = -31.508578 kcal Electronic energy + Delta-G solvation = -29121.662125 eV Core-core repulsion = 25009.471178 eV Total energy + Delta-G solvation = -4112.190947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.093 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.77764 -39.60770 -38.85680 -37.36123 -36.30513 -34.86862 -33.24581 -31.36954 -30.46473 -29.49067 -27.79452 -25.79197 -25.00329 -23.36672 -22.81287 -21.87370 -21.65926 -20.46730 -18.60825 -18.06008 -17.08513 -16.80756 -16.31169 -15.95374 -15.62893 -15.38288 -15.34902 -15.14181 -15.03308 -14.73458 -14.26324 -13.94795 -13.79113 -13.63809 -13.28274 -12.96406 -12.76631 -12.33140 -12.18054 -12.10213 -11.47806 -11.32518 -11.27874 -11.18107 -11.07573 -10.97943 -10.75775 -10.69661 -10.42649 -10.35534 -10.01549 -9.48902 -9.27988 -9.18016 -9.00881 -8.36538 -8.25995 -7.85946 -7.27216 -6.50696 -4.08827 0.58386 1.18061 1.81547 2.14308 2.26853 3.08388 3.17127 3.23010 3.59154 3.93528 4.04962 4.32034 4.47210 4.50649 4.55191 4.82472 4.83676 4.97585 5.09145 5.29835 5.44014 5.58085 5.59235 5.67701 5.69593 5.75610 5.82989 5.87315 5.97842 5.99948 6.03781 6.04209 6.18321 6.20846 6.32357 6.52652 6.58466 6.70257 6.78784 6.91367 6.96547 7.39246 7.62837 7.98696 8.28910 8.97511 9.14716 9.74635 10.54676 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.004298 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.868183 B = 6513.371871 C = 7948.780963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.380 6.380 3 C 0.106 3.894 4 C -0.065 4.065 5 C -0.153 4.153 6 C 0.513 3.487 7 O -0.561 6.561 8 N -0.400 5.400 9 C -0.304 4.304 10 H 0.101 0.899 11 C 0.044 3.956 12 N -0.860 5.860 13 Si 0.926 3.074 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.096 3.904 18 C -0.124 4.124 19 C -0.213 4.213 20 S 0.190 5.810 21 C -0.163 4.163 22 C -0.090 4.090 23 C -0.090 4.090 24 C -0.164 4.164 25 C 0.136 3.864 26 F -0.134 7.134 27 C -0.087 4.087 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.272 0.728 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 -2.560 12.791 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.299 6.299 3 C 0.028 3.972 4 C -0.079 4.079 5 C -0.273 4.273 6 C 0.301 3.699 7 O -0.446 6.446 8 N -0.116 5.116 9 C -0.432 4.432 10 H 0.118 0.882 11 C -0.162 4.162 12 N -0.496 5.496 13 Si 0.752 3.248 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.204 1.204 17 C -0.012 4.012 18 C -0.162 4.162 19 C -0.254 4.254 20 S 0.464 5.536 21 C -0.279 4.279 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.185 4.185 25 C 0.115 3.885 26 F -0.112 7.112 27 C -0.097 4.097 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.059 -2.670 11.582 12.559 hybrid contribution -1.709 0.512 0.117 1.788 sum 2.350 -2.158 11.699 12.126 Atomic orbital electron populations 1.22625 0.81707 1.01950 0.99686 1.87872 1.19025 1.27538 1.95433 1.21423 0.87685 0.85718 1.02404 1.18333 0.95892 1.03927 0.89701 1.24112 0.96618 1.07790 0.98773 1.16786 0.86995 0.84167 0.81932 1.90573 1.15017 1.54658 1.84375 1.42942 1.07869 1.55616 1.05183 1.19637 0.97365 1.43560 0.82655 0.88170 1.25447 0.95221 0.95129 1.00437 1.69833 1.07426 1.38142 1.34239 0.85861 0.79387 0.78174 0.81397 1.19022 1.20449 1.20436 1.21253 0.86063 0.90061 1.03793 1.22683 1.01257 1.00422 0.91817 1.23606 1.03557 1.00939 0.97274 1.85039 1.04301 1.72740 0.91482 1.23682 0.95716 1.06236 1.02260 1.20428 0.98674 1.01423 0.90680 1.20758 0.94359 0.99689 0.96398 1.20763 0.93468 1.06132 0.98145 1.17621 0.77467 1.01561 0.91872 1.91454 1.32078 1.93098 1.94603 1.17951 0.92882 1.06662 0.92165 0.90298 0.94798 0.93826 0.93262 0.88427 0.91808 0.86660 0.88636 0.89177 0.88342 0.89025 0.85307 0.84831 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 11.01 101.05 1.11 1.70 16 2 O -0.38 -7.70 10.69 -35.23 -0.38 -8.08 16 3 C 0.11 2.13 5.10 36.00 0.18 2.31 16 4 C -0.06 -1.32 5.49 -105.38 -0.58 -1.90 16 5 C -0.15 -3.27 5.96 -37.67 -0.22 -3.49 16 6 C 0.51 12.83 7.48 -12.81 -0.10 12.74 16 7 O -0.56 -15.34 13.69 5.18 0.07 -15.26 16 8 N -0.40 -9.94 2.89 -109.17 -0.32 -10.25 16 9 C -0.30 -8.04 8.61 -15.02 -0.13 -8.16 16 10 H 0.10 2.78 7.54 -52.49 -0.40 2.39 16 11 C 0.04 1.09 4.93 -17.45 -0.09 1.01 16 12 N -0.86 -21.22 10.89 55.50 0.60 -20.62 16 13 Si 0.93 19.65 29.56 -169.99 -5.02 14.63 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 17 C 0.10 2.05 2.16 -67.93 -0.15 1.90 16 18 C -0.12 -2.39 8.74 -26.73 -0.23 -2.62 16 19 C -0.21 -3.80 7.61 -26.73 -0.20 -4.00 16 20 S 0.19 3.28 16.28 -107.50 -1.75 1.53 16 21 C -0.16 -2.63 6.49 -38.30 -0.25 -2.87 16 22 C -0.09 -1.13 10.06 -39.28 -0.40 -1.52 16 23 C -0.09 -0.99 10.03 -39.63 -0.40 -1.39 16 24 C -0.16 -2.03 9.96 -39.72 -0.40 -2.42 16 25 C 0.14 2.16 7.34 -38.60 -0.28 1.87 16 26 F -0.13 -2.18 14.89 2.25 0.03 -2.15 16 27 C -0.09 -1.56 5.85 -107.07 -0.63 -2.19 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.05 0.90 6.26 -51.93 -0.32 0.58 16 32 H 0.10 2.17 5.55 -51.92 -0.29 1.88 16 33 H 0.27 6.35 8.32 -40.82 -0.34 6.01 16 34 H 0.12 2.50 7.13 -51.93 -0.37 2.13 16 35 H 0.10 1.98 7.92 -51.93 -0.41 1.57 16 36 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.10 1.47 7.37 -51.92 -0.38 1.09 16 38 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -29.89 352.02 -8.89 -38.79 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.69 Total: 5.16 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.75 Total: -9.04 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.29 Total: -30.87 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.31 Total: -23.34 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.03 Total: -2.15 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.75 Total: 1.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.89 -8.89 -38.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.279 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds