Wall clock time and date at job start Tue Mar 31 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36001 * 117.00219 * 2 1 4 4 C 1.38143 * 120.00216 * 0.27705 * 3 2 1 5 5 C 1.39726 * 119.84907 * 180.25123 * 4 3 2 6 6 C 1.47612 * 120.07020 * 179.74048 * 5 4 3 7 7 O 1.21583 * 119.99708 * 21.81664 * 6 5 4 8 8 N 1.34776 * 120.00097 * 201.80915 * 6 5 4 9 9 C 1.46498 * 119.99934 * 4.78962 * 8 6 5 10 10 C 1.46493 * 120.00179 * 184.78707 * 8 6 5 11 11 H 1.09001 * 109.47018 * 0.02562 * 10 8 6 12 12 C 1.52997 * 109.47467 * 120.00161 * 10 8 6 13 13 C 1.50704 * 109.47476 * 240.00558 * 10 8 6 14 14 H 1.08003 * 119.99405 * 359.97438 * 13 10 8 15 15 C 1.37875 * 120.00200 * 179.97438 * 13 10 8 16 16 N 1.31513 * 119.99919 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99937 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47015 * 270.00111 * 17 15 13 19 19 H 1.48496 * 109.47084 * 30.00338 * 17 15 13 20 20 H 1.48500 * 109.46924 * 149.99935 * 17 15 13 21 21 C 1.39699 * 119.85902 * 359.47071 * 5 4 3 22 22 C 1.37789 * 120.00394 * 0.27434 * 21 5 4 23 23 C 1.38838 * 120.14668 * 359.97438 * 22 21 5 24 24 O 1.35801 * 119.92473 * 180.02562 * 23 22 21 25 25 C 1.42901 * 117.00395 * 5.74338 * 24 23 22 26 26 C 1.54273 * 110.03164 * 273.70682 * 25 24 23 27 27 C 1.54892 * 104.19385 * 217.10687 * 26 25 24 28 28 C 1.54883 * 102.75130 * 37.93512 * 27 26 25 29 29 C 1.53865 * 110.03532 * 156.53733 * 25 24 23 30 30 H 1.08997 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47355 * 300.00522 * 1 2 3 32 32 H 1.09005 * 109.46764 * 60.00131 * 1 2 3 33 33 H 1.08008 * 120.07503 * 359.97438 * 4 3 2 34 34 H 1.08996 * 109.47037 * 264.28665 * 9 8 6 35 35 H 1.09007 * 109.46966 * 24.28523 * 9 8 6 36 36 H 1.09000 * 109.47182 * 144.28270 * 9 8 6 37 37 H 1.08997 * 109.47545 * 180.02562 * 12 10 8 38 38 H 1.09004 * 109.47268 * 300.00608 * 12 10 8 39 39 H 1.09001 * 109.46923 * 60.00038 * 12 10 8 40 40 H 0.97003 * 120.00003 * 180.02562 * 16 15 13 41 41 H 1.08006 * 120.00234 * 180.29682 * 21 5 4 42 42 H 1.07996 * 119.92879 * 180.02562 * 22 21 5 43 43 H 1.08999 * 110.01641 * 35.14036 * 25 24 23 44 44 H 1.09006 * 110.48133 * 335.77570 * 26 25 24 45 45 H 1.08994 * 110.48583 * 98.42372 * 26 25 24 46 46 H 1.09008 * 110.75180 * 279.62425 * 27 26 25 47 47 H 1.08994 * 110.91448 * 156.32983 * 27 26 25 48 48 H 1.09004 * 110.49242 * 203.38230 * 28 27 26 49 49 H 1.09007 * 110.48263 * 80.73746 * 28 27 26 50 50 H 1.09003 * 110.03558 * 238.57338 * 29 25 24 51 51 H 1.09003 * 110.03164 * 359.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2942 2.3704 0.0058 5 6 1.9319 3.6136 0.0005 6 6 1.1328 4.8547 0.0008 7 8 -0.0166 4.8375 0.3967 8 7 1.6774 6.0070 -0.4376 9 6 3.0251 6.0083 -1.0118 10 6 0.9216 7.2581 -0.3400 11 1 -0.0513 7.0607 0.1102 12 6 1.6927 8.2533 0.5294 13 6 0.7297 7.8380 -1.7177 14 1 1.1310 7.3259 -2.5797 15 6 0.0419 9.0222 -1.8776 16 7 -0.4464 9.6459 -0.8278 17 14 -0.1954 9.7412 -3.5852 18 1 0.9389 10.6452 -3.9036 19 1 -0.2473 8.6420 -4.5823 20 1 -1.4664 10.5080 -3.6272 21 6 3.3273 3.6796 0.0005 22 6 4.0719 2.5202 0.0001 23 6 3.4385 1.2847 0.0001 24 8 4.1767 0.1449 0.0002 25 6 5.5927 0.2890 0.1277 26 6 6.2281 0.5140 -1.2601 27 6 7.5677 -0.2607 -1.1945 28 6 7.1929 -1.5236 -0.3800 29 6 6.2062 -1.0064 0.6872 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 0.2155 2.3153 0.0099 34 1 3.7481 6.2759 -0.2412 35 1 3.2565 5.0156 -1.3981 36 1 3.0736 6.7343 -1.8234 37 1 1.1302 9.1841 0.6024 38 1 1.8316 7.8339 1.5259 39 1 2.6658 8.4508 0.0796 40 1 -0.9306 10.4789 -0.9403 41 1 3.8226 4.6393 0.0012 42 1 5.1506 2.5726 0.0005 43 1 5.8248 1.1266 0.7855 44 1 5.5890 0.1052 -2.0429 45 1 6.4089 1.5754 -1.4292 46 1 8.3267 0.3235 -0.6740 47 1 7.9093 -0.5325 -2.1933 48 1 8.0779 -1.9491 0.0931 49 1 6.7097 -2.2613 -1.0207 50 1 6.7367 -0.7975 1.6162 51 1 5.4238 -1.7449 0.8620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069352045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:51 Heat of formation + Delta-G solvation = -65.735195 kcal Electronic energy + Delta-G solvation = -31139.059618 eV Core-core repulsion = 27005.069595 eV Total energy + Delta-G solvation = -4133.990023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.87810 -39.50081 -38.88082 -37.12964 -36.05594 -35.42868 -32.95161 -30.65697 -30.45680 -29.18715 -29.07009 -27.99285 -27.16404 -26.44520 -25.23055 -23.49715 -22.43446 -21.28047 -21.09252 -20.20504 -19.24929 -18.34090 -17.59112 -16.67547 -16.41415 -16.05332 -15.82228 -15.61597 -15.41294 -15.35191 -14.89336 -14.45221 -14.41529 -14.26361 -13.76862 -13.66178 -13.29701 -13.00635 -12.76312 -12.59870 -12.43072 -12.22212 -12.07296 -11.84149 -11.66539 -11.52021 -11.43916 -11.35684 -11.18930 -11.11022 -11.06727 -10.99486 -10.82054 -10.74410 -10.62079 -10.43760 -10.27201 -10.15504 -9.20633 -9.01860 -8.73049 -8.43929 -7.80956 -7.59561 -6.07943 -4.15802 1.06810 1.35315 3.02115 3.23063 3.25715 3.28051 3.33330 3.36533 3.86686 4.10135 4.15397 4.19998 4.39242 4.51822 4.75368 4.79549 4.93055 5.01421 5.05853 5.09367 5.13668 5.18526 5.19216 5.23582 5.26771 5.31476 5.35179 5.49128 5.51104 5.52702 5.60900 5.69924 5.71094 5.79833 5.83167 5.91400 5.94887 6.06502 6.19214 6.35740 6.43869 6.57904 6.74147 6.82603 7.02258 7.04742 7.40539 7.52286 7.53602 7.70431 8.00505 8.18498 8.49269 8.81998 9.02322 9.50489 10.97443 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.002539 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.511319 B =11025.915149 C =11999.990628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.085 3.915 4 C -0.117 4.117 5 C -0.119 4.119 6 C 0.546 3.454 7 O -0.550 6.550 8 N -0.583 5.583 9 C 0.066 3.934 10 C 0.257 3.743 11 H 0.064 0.936 12 C -0.146 4.146 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.285 1.285 21 C -0.103 4.103 22 C -0.187 4.187 23 C 0.118 3.882 24 O -0.296 6.296 25 C 0.077 3.923 26 C -0.150 4.150 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.121 4.121 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.145 0.855 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.011 0.989 39 H 0.030 0.970 40 H 0.263 0.737 41 H 0.157 0.843 42 H 0.138 0.862 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.216 -20.068 1.607 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.040 3.960 4 C -0.137 4.137 5 C -0.123 4.123 6 C 0.334 3.666 7 O -0.430 6.430 8 N -0.313 5.313 9 C -0.077 4.077 10 C 0.157 3.843 11 H 0.082 0.918 12 C -0.205 4.205 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.199 1.199 20 H -0.211 1.211 21 C -0.121 4.121 22 C -0.205 4.205 23 C 0.072 3.928 24 O -0.210 6.210 25 C 0.021 3.979 26 C -0.187 4.187 27 C -0.161 4.161 28 C -0.161 4.161 29 C -0.159 4.159 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.163 0.837 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.030 0.970 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.174 0.826 42 H 0.156 0.844 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.516 -20.254 1.846 24.987 hybrid contribution -0.192 0.863 -0.954 1.301 sum 14.324 -19.391 0.892 24.125 Atomic orbital electron populations 1.23085 0.78463 1.03723 1.01808 1.86131 1.21077 1.25606 1.89417 1.18050 0.88987 0.85149 1.03852 1.21159 1.00721 0.90054 1.01760 1.19910 0.93655 0.93816 1.04874 1.18112 0.86409 0.83176 0.78923 1.90724 1.17455 1.85617 1.49178 1.48113 1.16331 1.08920 1.57980 1.22269 0.84218 1.02544 0.98652 1.18978 0.91608 0.77513 0.96151 0.91793 1.22092 0.99731 1.02896 0.95771 1.21305 1.35903 1.06892 0.92288 0.92196 1.24890 0.95142 0.96672 0.97077 1.69878 1.36493 1.17395 1.28808 0.86488 0.77620 0.79070 0.84187 1.20611 1.19924 1.21092 1.22056 0.93046 0.99631 0.97348 1.21046 1.00309 0.90837 1.08349 1.18387 0.88063 0.86149 1.00193 1.86202 1.18683 1.28478 1.87642 1.23191 0.78478 0.99232 0.97015 1.22978 0.97191 1.01184 0.97374 1.22441 0.96672 0.96407 1.00583 1.22351 0.98667 0.97749 0.97302 1.22196 0.98726 0.96343 0.98595 0.88324 0.92434 0.92515 0.83717 0.93219 0.90846 0.90330 0.88731 0.96967 0.95102 0.92674 0.82565 0.84438 0.90488 0.90092 0.90796 0.91199 0.91087 0.91263 0.91217 0.90520 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.36 10.28 -34.41 -0.35 -4.71 16 3 C 0.08 1.27 6.69 -39.19 -0.26 1.01 16 4 C -0.12 -1.91 8.57 -39.06 -0.33 -2.24 16 5 C -0.12 -2.07 5.57 -104.97 -0.58 -2.66 16 6 C 0.55 11.91 7.52 -12.44 -0.09 11.81 16 7 O -0.55 -14.02 15.88 5.29 0.08 -13.94 16 8 N -0.58 -12.66 2.75 -176.47 -0.49 -13.14 16 9 C 0.07 1.11 7.71 59.85 0.46 1.57 16 10 C 0.26 6.61 2.63 -69.09 -0.18 6.43 16 11 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 12 C -0.15 -3.49 8.97 37.16 0.33 -3.15 16 13 C -0.53 -14.21 8.04 -34.44 -0.28 -14.48 16 14 H 0.06 1.60 7.24 -52.48 -0.38 1.22 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 17 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.10 -1.45 7.54 -39.20 -0.30 -1.74 16 22 C -0.19 -2.29 8.74 -39.52 -0.35 -2.64 16 23 C 0.12 1.62 6.65 -38.93 -0.26 1.36 16 24 O -0.30 -3.76 9.47 -33.78 -0.32 -4.08 16 25 C 0.08 0.70 2.80 -25.61 -0.07 0.63 16 26 C -0.15 -1.19 6.09 -25.07 -0.15 -1.35 16 27 C -0.12 -0.77 6.91 -24.74 -0.17 -0.94 16 28 C -0.12 -0.77 6.83 -25.07 -0.17 -0.94 16 29 C -0.12 -0.91 6.61 -25.62 -0.17 -1.08 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.60 7.65 -51.93 -0.40 0.20 16 32 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 33 H 0.15 2.34 6.03 -52.48 -0.32 2.02 16 34 H 0.05 0.72 7.20 -51.93 -0.37 0.34 16 35 H 0.07 1.06 4.94 -51.92 -0.26 0.80 16 36 H 0.08 1.39 6.96 -51.93 -0.36 1.02 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 38 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.16 1.99 4.15 -52.48 -0.22 1.77 16 42 H 0.14 1.28 5.30 -52.49 -0.28 1.01 16 43 H 0.08 0.64 6.36 -51.93 -0.33 0.31 16 44 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 45 H 0.07 0.54 7.48 -51.93 -0.39 0.15 16 46 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.08 0.69 7.95 -51.93 -0.41 0.28 16 LS Contribution 396.49 15.07 5.98 5.98 Total: -1.00 -32.73 396.49 -8.87 -41.60 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.70 Total: 2.21 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.68 Total: -5.48 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.14 Total: -37.60 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.59 Total: -22.72 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.73 -8.87 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069352045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.134 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds