Wall clock time and date at job start Tue Mar 31 2020 04:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35999 * 116.99753 * 2 1 4 4 C 1.38136 * 120.00452 * 359.72477 * 3 2 1 5 5 C 1.39729 * 119.85133 * 180.27424 * 4 3 2 6 6 C 1.47605 * 120.07239 * 179.97438 * 5 4 3 7 7 O 1.21587 * 120.00097 * 318.24963 * 6 5 4 8 8 N 1.34781 * 120.00395 * 138.24767 * 6 5 4 9 9 C 1.46497 * 119.99475 * 4.36777 * 8 6 5 10 10 C 1.46498 * 120.00299 * 184.36003 * 8 6 5 11 11 H 1.09001 * 109.47142 * 0.02562 * 10 8 6 12 12 C 1.52998 * 109.47206 * 240.00383 * 10 8 6 13 13 C 1.50704 * 109.46671 * 120.00285 * 10 8 6 14 14 H 1.08003 * 120.00137 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99792 * 180.02562 * 13 10 8 16 16 N 1.31507 * 119.99936 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99835 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47336 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47278 * 120.00229 * 17 15 13 20 20 H 1.48504 * 109.46851 * 239.99857 * 17 15 13 21 21 C 1.39701 * 119.85917 * 0.02562 * 5 4 3 22 22 C 1.37792 * 120.00131 * 359.97438 * 21 5 4 23 23 C 1.38831 * 120.15156 * 359.97438 * 22 21 5 24 24 O 1.35801 * 119.92863 * 180.02562 * 23 22 21 25 25 C 1.42898 * 116.99915 * 5.72833 * 24 23 22 26 26 C 1.54262 * 110.03256 * 272.08003 * 25 24 23 27 27 C 1.54894 * 104.19467 * 217.10440 * 26 25 24 28 28 C 1.54895 * 102.74395 * 37.94367 * 27 26 25 29 29 C 1.53873 * 110.02800 * 154.91295 * 25 24 23 30 30 H 1.09005 * 109.46773 * 299.99626 * 1 2 3 31 31 H 1.08996 * 109.47337 * 59.99744 * 1 2 3 32 32 H 1.09000 * 109.46824 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.07478 * 0.30128 * 4 3 2 34 34 H 1.08999 * 109.47409 * 91.25809 * 9 8 6 35 35 H 1.09001 * 109.47291 * 211.25581 * 9 8 6 36 36 H 1.09000 * 109.47345 * 331.25602 * 9 8 6 37 37 H 1.09000 * 109.46895 * 180.02562 * 12 10 8 38 38 H 1.09003 * 109.46870 * 299.99907 * 12 10 8 39 39 H 1.08993 * 109.47115 * 60.00235 * 12 10 8 40 40 H 0.97007 * 119.99810 * 180.02562 * 16 15 13 41 41 H 1.08000 * 119.99771 * 179.97438 * 21 5 4 42 42 H 1.08004 * 119.92295 * 179.97438 * 22 21 5 43 43 H 1.09001 * 110.01322 * 33.52383 * 25 24 23 44 44 H 1.08994 * 110.48772 * 335.78432 * 26 25 24 45 45 H 1.09003 * 110.48567 * 98.43279 * 26 25 24 46 46 H 1.08997 * 110.75600 * 279.63027 * 27 26 25 47 47 H 1.09000 * 110.91306 * 156.32542 * 27 26 25 48 48 H 1.09004 * 110.47980 * 203.37524 * 28 27 26 49 49 H 1.09005 * 110.48699 * 80.74017 * 28 27 26 50 50 H 1.09003 * 110.03492 * 238.57068 * 29 25 24 51 51 H 1.09001 * 110.03888 * 0.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2942 2.3703 -0.0057 5 6 1.9318 3.6136 -0.0115 6 6 1.1327 4.8546 -0.0183 7 8 0.1436 4.9370 -0.7205 8 7 1.4995 5.8966 0.7540 9 6 2.7425 5.8337 1.5267 10 6 0.6552 7.0920 0.8207 11 1 -0.2193 6.9551 0.1846 12 6 1.4516 8.3063 0.3391 13 6 0.2111 7.3145 2.2435 14 1 0.5265 6.6338 3.0204 15 6 -0.5980 8.3870 2.5533 16 7 -0.9817 9.2161 1.6074 17 14 -1.1480 8.6633 4.3171 18 1 -0.5835 7.5981 5.1842 19 1 -0.6673 9.9886 4.7837 20 1 -2.6309 8.6225 4.3853 21 6 3.3273 3.6796 -0.0120 22 6 4.0719 2.5202 -0.0063 23 6 3.4386 1.2848 0.0006 24 8 4.1769 0.1450 0.0067 25 6 5.5929 0.2899 0.1329 26 6 6.2322 0.4665 -1.2599 27 6 7.5698 -0.3087 -1.1648 28 6 7.1896 -1.5426 -0.3092 29 6 6.2016 -0.9875 0.7373 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2156 2.3152 -0.0053 34 1 3.5598 6.2453 0.9344 35 1 2.6304 6.4131 2.4432 36 1 2.9624 4.7960 1.7775 37 1 0.8235 9.1958 0.3891 38 1 2.3259 8.4431 0.9756 39 1 1.7728 8.1454 -0.6899 40 1 -1.5506 9.9710 1.8255 41 1 3.8224 4.6394 -0.0169 42 1 5.1506 2.5727 -0.0071 43 1 5.8253 1.1485 0.7629 44 1 5.5942 0.0334 -2.0302 45 1 6.4162 1.5213 -1.4642 46 1 8.3288 0.2909 -0.6623 47 1 7.9132 -0.6148 -2.1530 48 1 8.0725 -1.9541 0.1801 49 1 6.7063 -2.3003 -0.9261 50 1 6.7303 -0.7488 1.6601 51 1 5.4170 -1.7182 0.9340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069352046.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:55 Heat of formation + Delta-G solvation = -81.565352 kcal Electronic energy + Delta-G solvation = -31110.060281 eV Core-core repulsion = 26975.383811 eV Total energy + Delta-G solvation = -4134.676470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.85232 -39.46079 -38.86224 -37.13941 -36.05808 -35.35527 -32.88874 -30.61181 -30.45779 -29.19770 -29.06652 -28.00770 -27.18187 -26.24620 -25.23389 -23.53212 -22.49974 -21.27599 -21.09043 -20.21656 -19.20817 -18.38304 -17.45651 -16.67446 -16.39833 -16.05494 -15.86311 -15.70304 -15.43909 -15.36918 -14.88777 -14.45598 -14.37804 -14.23536 -13.77857 -13.67492 -13.33924 -13.02089 -12.60623 -12.46186 -12.40455 -12.37760 -12.10346 -11.73829 -11.66323 -11.51872 -11.44510 -11.39942 -11.33499 -11.08791 -11.03485 -10.91419 -10.91104 -10.80817 -10.68519 -10.58919 -10.25209 -10.18197 -9.20874 -9.05128 -8.73915 -8.44787 -7.80055 -7.59994 -6.09002 -4.17024 1.11353 1.34763 3.02693 3.20034 3.24662 3.29797 3.33096 3.36216 3.77870 4.04577 4.15518 4.20133 4.38198 4.51844 4.74589 4.79513 4.93067 5.01270 5.05831 5.09466 5.13362 5.18736 5.19186 5.22513 5.26675 5.31015 5.36205 5.49035 5.50911 5.52527 5.60075 5.69908 5.76426 5.79775 5.83148 5.94667 5.97537 6.06201 6.18565 6.38128 6.44737 6.56493 6.75246 6.83613 7.02327 7.05674 7.40656 7.51809 7.53470 7.70128 8.00452 8.17545 8.49324 8.80654 9.01176 9.49483 10.96367 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.002485 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.412184 B =11265.734500 C =11902.244122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.089 3.911 4 C -0.122 4.122 5 C -0.112 4.112 6 C 0.547 3.453 7 O -0.549 6.549 8 N -0.583 5.583 9 C 0.076 3.924 10 C 0.257 3.743 11 H 0.064 0.936 12 C -0.146 4.146 13 C -0.526 4.526 14 H 0.060 0.940 15 C 0.064 3.936 16 N -0.887 5.887 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.087 4.087 22 C -0.183 4.183 23 C 0.115 3.885 24 O -0.296 6.296 25 C 0.077 3.923 26 C -0.149 4.149 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.122 4.122 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.012 0.988 40 H 0.263 0.737 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.018 -19.163 -2.756 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.044 3.956 4 C -0.141 4.141 5 C -0.115 4.115 6 C 0.334 3.666 7 O -0.428 6.428 8 N -0.313 5.313 9 C -0.067 4.067 10 C 0.157 3.843 11 H 0.082 0.918 12 C -0.204 4.204 13 C -0.564 4.564 14 H 0.079 0.921 15 C -0.138 4.138 16 N -0.525 5.525 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.106 4.106 22 C -0.202 4.202 23 C 0.069 3.931 24 O -0.210 6.210 25 C 0.020 3.980 26 C -0.187 4.187 27 C -0.161 4.161 28 C -0.161 4.161 29 C -0.159 4.159 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.160 0.840 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.397 -19.299 -3.138 24.887 hybrid contribution -0.382 0.642 1.038 1.279 sum 15.016 -18.658 -2.099 24.041 Atomic orbital electron populations 1.23094 0.78439 1.03772 1.01809 1.86135 1.21097 1.25588 1.89352 1.18040 0.88985 0.85108 1.03484 1.21090 1.00526 0.90038 1.02495 1.19879 0.93756 0.93860 1.04046 1.18140 0.84570 0.83058 0.80830 1.90740 1.27601 1.82552 1.41945 1.48165 1.23109 1.17307 1.42746 1.21912 0.86213 1.01499 0.97113 1.18989 0.89265 0.78551 0.97474 0.91823 1.22076 0.99791 1.02612 0.95957 1.21353 1.30975 1.10931 0.93184 0.92134 1.24894 0.95675 0.95684 0.97541 1.69892 1.35362 1.15214 1.32022 0.86437 0.78531 0.77994 0.84419 1.19798 1.20912 1.20905 1.21282 0.92524 0.98658 0.98129 1.20983 1.00268 0.90804 1.08121 1.18331 0.88043 0.86114 1.00609 1.86206 1.18654 1.28381 1.87737 1.23196 0.78503 0.99375 0.96883 1.22958 0.97165 1.01209 0.97326 1.22443 0.96672 0.96609 1.00381 1.22351 0.98664 0.97801 0.97254 1.22205 0.98764 0.96438 0.98501 0.92493 0.92421 0.88293 0.83968 0.93687 0.90181 0.91903 0.88778 0.95125 0.96931 0.92712 0.84370 0.84425 0.90415 0.90105 0.90881 0.91202 0.91112 0.91265 0.91223 0.90500 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.36 10.28 -34.40 -0.35 -4.71 16 3 C 0.09 1.34 6.69 -39.19 -0.26 1.07 16 4 C -0.12 -1.98 8.64 -39.06 -0.34 -2.32 16 5 C -0.11 -1.95 5.15 -104.97 -0.54 -2.49 16 6 C 0.55 11.90 7.31 -12.44 -0.09 11.81 16 7 O -0.55 -14.01 16.28 5.29 0.09 -13.92 16 8 N -0.58 -12.69 2.75 -176.47 -0.49 -13.17 16 9 C 0.08 1.30 7.93 59.85 0.47 1.78 16 10 C 0.26 6.61 2.63 -69.08 -0.18 6.42 16 11 H 0.06 1.90 6.91 -51.93 -0.36 1.54 16 12 C -0.15 -3.50 8.97 37.16 0.33 -3.16 16 13 C -0.53 -14.17 8.00 -34.44 -0.28 -14.45 16 14 H 0.06 1.61 7.31 -52.48 -0.38 1.23 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.01 11.32 55.43 0.63 -24.39 16 17 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.09 -1.23 7.48 -39.20 -0.29 -1.52 16 22 C -0.18 -2.24 8.78 -39.53 -0.35 -2.59 16 23 C 0.11 1.58 6.66 -38.93 -0.26 1.32 16 24 O -0.30 -3.75 9.47 -33.78 -0.32 -4.07 16 25 C 0.08 0.70 2.79 -25.62 -0.07 0.63 16 26 C -0.15 -1.19 6.17 -25.07 -0.15 -1.34 16 27 C -0.12 -0.76 6.91 -24.73 -0.17 -0.93 16 28 C -0.12 -0.77 6.83 -25.07 -0.17 -0.94 16 29 C -0.12 -0.91 6.61 -25.62 -0.17 -1.08 16 30 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 31 H 0.06 0.60 7.65 -51.93 -0.40 0.21 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.14 2.28 6.28 -52.49 -0.33 1.95 16 34 H 0.04 0.66 7.26 -51.93 -0.38 0.28 16 35 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 36 H 0.06 0.94 5.51 -51.93 -0.29 0.65 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 38 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.14 1.77 5.74 -52.49 -0.30 1.46 16 42 H 0.14 1.29 5.39 -52.48 -0.28 1.00 16 43 H 0.08 0.64 6.25 -51.93 -0.32 0.32 16 44 H 0.08 0.74 8.08 -51.93 -0.42 0.33 16 45 H 0.07 0.54 7.60 -51.93 -0.39 0.14 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.08 0.69 7.95 -51.93 -0.41 0.28 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -32.57 399.28 -8.91 -41.48 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.84 Total: 1.71 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.62 Total: -4.89 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.14 Total: -37.56 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.59 Total: -22.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.57 -8.91 -41.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069352046.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.085 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds