Wall clock time and date at job start Tue Mar 31 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30065 * 124.93235 * 2 1 4 4 C 1.35870 * 109.56200 * 179.97438 * 3 2 1 5 5 C 1.39397 * 133.51784 * 180.02562 * 4 3 2 6 6 C 1.39197 * 119.50347 * 180.02562 * 5 4 3 7 7 C 1.47578 * 119.90681 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99695 * 313.40595 * 7 6 5 9 9 N 1.34775 * 119.99789 * 133.41108 * 7 6 5 10 10 C 1.36908 * 119.99571 * 185.54732 * 9 7 6 11 11 H 1.07999 * 119.99866 * 122.74773 * 10 9 7 12 12 C 1.39024 * 120.00076 * 302.74250 * 10 9 7 13 13 N 1.31385 * 119.99885 * 339.53050 * 12 10 9 14 14 Si 1.86795 * 119.99939 * 159.52516 * 12 10 9 15 15 H 1.48497 * 109.47213 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46965 * 120.00062 * 14 12 10 17 17 H 1.48506 * 109.47106 * 240.00024 * 14 12 10 18 18 C 1.46494 * 120.00174 * 5.54717 * 9 7 6 19 19 C 1.50700 * 109.47229 * 98.75146 * 18 9 7 20 20 C 1.38231 * 120.00232 * 50.43035 * 19 18 9 21 21 C 1.38241 * 119.99941 * 179.97438 * 20 19 18 22 22 C 1.38227 * 120.00034 * 0.08827 * 21 20 19 23 23 C 1.38235 * 120.00135 * 359.86820 * 22 21 20 24 24 C 1.38237 * 119.99541 * 230.41129 * 19 18 9 25 25 C 1.40195 * 120.17996 * 0.26819 * 6 5 4 26 26 C 1.36416 * 120.44870 * 359.42694 * 25 6 5 27 27 C 1.39082 * 120.15824 * 0.59562 * 26 25 6 28 28 N 1.36089 * 124.93697 * 179.97438 * 2 1 3 29 29 C 1.46501 * 126.30228 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47366 * 90.02014 * 1 2 3 31 31 H 1.09000 * 109.47126 * 210.01966 * 1 2 3 32 32 H 1.09001 * 109.47611 * 330.02309 * 1 2 3 33 33 H 1.08001 * 120.24868 * 0.02562 * 5 4 3 34 34 H 0.97001 * 119.99509 * 185.02376 * 13 12 10 35 35 H 1.08997 * 109.47468 * 338.74828 * 18 9 7 36 36 H 1.09001 * 109.47301 * 218.74913 * 18 9 7 37 37 H 1.08001 * 120.00114 * 359.70642 * 20 19 18 38 38 H 1.08004 * 119.99488 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.99820 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00113 * 180.02562 * 23 22 21 41 41 H 1.07994 * 120.00563 * 359.97438 * 24 19 18 42 42 H 1.07998 * 119.76910 * 179.73071 * 25 6 5 43 43 H 1.08007 * 119.91870 * 180.27226 * 26 25 6 44 44 H 1.09001 * 109.47024 * 90.01997 * 29 28 2 45 45 H 1.08991 * 109.47123 * 210.02297 * 29 28 2 46 46 H 1.09004 * 109.47299 * 330.02681 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2517 1.0663 0.0000 4 6 3.5618 0.7062 0.0006 5 6 4.7553 1.4265 0.0013 6 6 5.9682 0.7435 0.0012 7 6 7.2370 1.4971 0.0025 8 8 7.3905 2.4306 -0.7617 9 7 8.2256 1.1507 0.8506 10 6 9.3569 1.9173 0.9326 11 1 9.6563 2.3384 1.8810 12 6 10.1205 2.1536 -0.2049 13 7 10.0173 1.3549 -1.2430 14 14 11.2930 3.6068 -0.2575 15 1 11.2236 4.3456 1.0288 16 1 12.6784 3.1174 -0.4726 17 1 10.9094 4.5123 -1.3703 18 6 8.0895 -0.0459 1.6845 19 6 8.8338 -1.1904 1.0463 20 6 10.1452 -1.0226 0.6428 21 6 10.8281 -2.0726 0.0577 22 6 10.1989 -3.2897 -0.1254 23 6 8.8877 -3.4578 0.2790 24 6 8.2051 -2.4080 0.8647 25 6 5.9876 -0.6583 -0.0052 26 6 4.8214 -1.3659 0.0003 27 6 3.6002 -0.7003 -0.0001 28 7 2.2863 -1.1156 0.0005 29 6 1.8151 -2.5028 0.0006 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8902 0.5135 33 1 4.7390 2.5063 0.0019 34 1 10.6015 1.4757 -2.0078 35 1 7.0351 -0.3055 1.7783 36 1 8.5045 0.1510 2.6731 37 1 10.6350 -0.0700 0.7806 38 1 11.8526 -1.9414 -0.2579 39 1 10.7323 -4.1099 -0.5828 40 1 8.3963 -4.4088 0.1363 41 1 7.1808 -2.5393 1.1806 42 1 6.9325 -1.1815 -0.0097 43 1 4.8464 -2.4457 -0.0003 44 1 1.6990 -2.8471 -1.0271 45 1 2.5405 -3.1329 0.5151 46 1 0.8551 -2.5605 0.5137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069379538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:44 Heat of formation + Delta-G solvation = 92.687740 kcal Electronic energy + Delta-G solvation = -30852.187436 eV Core-core repulsion = 26901.524245 eV Total energy + Delta-G solvation = -3950.663191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.01710 -39.42658 -37.97734 -36.45662 -34.50483 -34.17235 -32.34585 -31.25891 -30.60207 -30.09584 -29.95818 -27.69577 -27.08992 -25.69146 -24.47039 -22.41343 -22.16223 -21.57548 -20.69279 -20.02446 -19.38079 -17.53355 -17.02721 -16.45681 -16.01599 -15.92907 -15.49996 -14.93120 -14.74864 -14.50131 -14.10716 -13.92133 -13.80018 -13.57981 -13.52897 -13.17768 -13.02904 -13.00135 -12.75862 -12.65363 -12.47656 -12.38835 -12.03577 -11.85565 -11.44671 -11.12002 -11.08136 -10.91021 -10.78683 -10.72810 -10.36747 -10.23061 -10.22974 -10.15042 -9.77399 -8.63369 -8.39905 -8.15188 -7.97392 -7.85059 -7.79909 -7.15353 -6.17406 -4.01983 1.24492 1.63435 2.00676 2.16069 2.61587 2.90587 3.27600 3.40793 3.41724 3.91163 4.12740 4.28392 4.47009 4.50014 4.52693 4.60856 4.86826 4.93338 5.05798 5.13172 5.20025 5.26215 5.28381 5.42656 5.50696 5.52288 5.61713 5.64103 5.72967 5.77641 5.82735 5.85671 6.04227 6.11246 6.23112 6.35070 6.41351 6.48338 6.66948 6.68611 6.77638 6.85169 6.96977 7.05284 7.14114 7.22887 7.33012 7.50708 7.60789 7.79238 8.03965 8.31807 9.01146 9.06903 9.52345 10.18639 10.86903 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.003909 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.074743 B = 7160.449674 C = 9098.219862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.264 3.736 3 N -0.487 5.487 4 C 0.040 3.960 5 C -0.026 4.026 6 C -0.108 4.108 7 C 0.533 3.467 8 O -0.536 6.536 9 N -0.440 5.440 10 C -0.356 4.356 11 H 0.079 0.921 12 C 0.082 3.918 13 N -0.828 5.828 14 Si 0.906 3.094 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.280 1.280 18 C 0.131 3.869 19 C -0.090 4.090 20 C -0.047 4.047 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.140 4.140 24 C -0.133 4.133 25 C -0.088 4.088 26 C -0.126 4.126 27 C 0.052 3.948 28 N -0.496 5.496 29 C 0.081 3.919 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.266 0.734 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.149 0.851 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.158 0.842 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.564 -12.773 4.396 18.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.001 4.001 3 N -0.207 5.207 4 C -0.078 4.078 5 C -0.046 4.046 6 C -0.114 4.114 7 C 0.320 3.680 8 O -0.415 6.415 9 N -0.161 5.161 10 C -0.483 4.483 11 H 0.096 0.904 12 C -0.129 4.129 13 N -0.459 5.459 14 Si 0.732 3.268 15 H -0.194 1.194 16 H -0.212 1.212 17 H -0.205 1.205 18 C 0.007 3.993 19 C -0.092 4.092 20 C -0.065 4.065 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.158 4.158 24 C -0.152 4.152 25 C -0.107 4.107 26 C -0.147 4.147 27 C -0.056 4.056 28 N -0.188 5.188 29 C -0.062 4.062 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.151 0.849 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.166 0.834 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.175 0.825 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.764 -11.558 3.788 17.631 hybrid contribution 0.847 -0.499 -0.436 1.075 sum -11.917 -12.057 3.352 17.281 Atomic orbital electron populations 1.20302 0.84681 1.04226 1.03843 1.23517 0.95535 0.80852 1.00233 1.70381 1.01097 1.27240 1.22020 1.18828 0.91580 0.90263 1.07080 1.20270 0.87807 0.99893 0.96659 1.20270 0.94793 0.93797 1.02572 1.18017 0.82152 0.84183 0.83645 1.90642 1.81071 1.30834 1.38919 1.43020 1.15162 1.20566 1.37383 1.18903 1.02990 1.30434 0.95934 0.90373 1.25445 0.96155 0.95819 0.95531 1.69868 1.35559 1.34244 1.06240 0.86265 0.78903 0.82825 0.78772 1.19350 1.21179 1.20536 1.20756 0.98102 0.85546 0.94847 1.20410 0.95166 0.94228 0.99371 1.21469 0.93894 0.98591 0.92593 1.21125 0.99841 0.93464 1.00148 1.20969 0.95236 0.97433 1.01275 1.20834 0.95073 0.98281 1.01583 1.20981 0.99320 0.93417 1.01452 1.21777 0.99098 0.93618 0.96253 1.19501 0.88826 0.99009 1.07380 1.18939 0.84978 0.95196 1.06487 1.44990 1.04807 1.07187 1.61768 1.21911 1.01320 0.79741 1.03221 0.89722 0.90593 0.88782 0.84897 0.92415 0.91054 0.90997 0.83353 0.87205 0.87472 0.87316 0.86737 0.82530 0.86361 0.90978 0.89816 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.17 36.00 0.37 -0.19 16 2 C 0.26 3.52 7.85 -154.81 -1.22 2.31 16 3 N -0.49 -8.56 11.28 -8.25 -0.09 -8.66 16 4 C 0.04 0.75 7.22 -84.72 -0.61 0.14 16 5 C -0.03 -0.54 9.74 -38.79 -0.38 -0.91 16 6 C -0.11 -2.36 5.04 -105.00 -0.53 -2.89 16 7 C 0.53 13.78 6.76 -12.45 -0.08 13.69 16 8 O -0.54 -16.10 15.79 5.27 0.08 -16.02 16 9 N -0.44 -10.75 2.31 -117.27 -0.27 -11.02 16 10 C -0.36 -9.28 7.16 -14.99 -0.11 -9.39 16 11 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 12 C 0.08 2.19 3.54 -17.45 -0.06 2.12 16 13 N -0.83 -22.84 11.83 55.50 0.66 -22.18 16 14 Si 0.91 21.19 29.60 -169.99 -5.03 16.16 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C 0.13 2.61 5.26 -5.20 -0.03 2.59 16 19 C -0.09 -1.75 4.86 -104.62 -0.51 -2.26 16 20 C -0.05 -0.98 8.38 -39.58 -0.33 -1.31 16 21 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 22 C -0.13 -2.11 10.05 -39.59 -0.40 -2.51 16 23 C -0.14 -2.15 10.05 -39.58 -0.40 -2.55 16 24 C -0.13 -2.19 7.52 -39.58 -0.30 -2.49 16 25 C -0.09 -1.65 6.67 -39.50 -0.26 -1.91 16 26 C -0.13 -1.98 9.97 -39.93 -0.40 -2.38 16 27 C 0.05 0.86 6.87 -83.94 -0.58 0.28 16 28 N -0.50 -6.33 3.20 -118.44 -0.38 -6.71 16 29 C 0.08 0.59 10.95 59.85 0.66 1.24 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.38 7.01 -51.93 -0.36 0.01 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.13 2.81 8.06 -52.49 -0.42 2.39 16 34 H 0.27 7.10 8.32 -40.82 -0.34 6.76 16 35 H 0.07 1.30 4.87 -51.93 -0.25 1.05 16 36 H 0.07 1.35 8.11 -51.93 -0.42 0.92 16 37 H 0.15 3.44 5.17 -52.49 -0.27 3.16 16 38 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 40 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.11 1.62 6.93 -52.49 -0.36 1.26 16 42 H 0.16 2.97 2.76 -52.49 -0.14 2.82 16 43 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.39 6.99 -51.93 -0.36 0.02 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -34.74 374.32 -10.49 -45.23 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.54 Total: 6.72 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -5.56 Total: -9.16 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.09 Total: -48.57 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.08 Total: -16.02 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.74 -10.49 -45.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069379538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.915 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds