Wall clock time and date at job start Tue Mar 31 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38935 * 119.67145 * 2 1 4 4 C 1.36441 * 120.61062 * 180.24720 * 3 2 1 5 5 C 1.40099 * 119.83195 * 359.51561 * 4 3 2 6 6 C 1.41586 * 133.37607 * 180.18322 * 5 4 3 7 7 C 1.35873 * 107.72295 * 180.28625 * 6 5 4 8 8 C 1.47063 * 125.42869 * 179.97438 * 7 6 5 9 9 O 1.21652 * 119.99967 * 348.20975 * 8 7 6 10 10 N 1.34776 * 120.00027 * 168.20147 * 8 7 6 11 11 C 1.46501 * 119.99724 * 2.42035 * 10 8 7 12 12 C 1.50697 * 109.46867 * 82.72012 * 11 10 8 13 13 H 1.07997 * 120.00475 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99949 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99828 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00369 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47360 * 59.99439 * 16 14 12 18 18 H 1.48498 * 109.47501 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46942 * 299.99717 * 16 14 12 20 20 C 1.46496 * 120.00193 * 182.41687 * 10 8 7 21 21 C 1.50701 * 109.47119 * 90.00252 * 20 10 8 22 22 C 1.38674 * 120.41482 * 269.72320 * 21 20 10 23 23 C 1.38635 * 118.41671 * 179.78156 * 22 21 20 24 24 C 1.38225 * 119.15736 * 0.51385 * 23 22 21 25 25 N 1.31853 * 120.76710 * 359.72402 * 24 23 22 26 26 C 1.31883 * 121.72762 * 0.02562 * 25 24 23 27 27 N 1.38145 * 109.13980 * 0.02562 * 7 6 5 28 28 H 0.97001 * 125.60428 * 180.02562 * 27 7 6 29 29 C 1.37477 * 108.78991 * 359.97438 * 27 7 6 30 30 C 1.37670 * 119.67648 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47077 * 269.97374 * 1 2 3 32 32 H 1.08999 * 109.47368 * 29.97616 * 1 2 3 33 33 H 1.09001 * 109.46993 * 149.97986 * 1 2 3 34 34 H 1.07994 * 119.69752 * 0.02562 * 3 2 1 35 35 H 1.08001 * 120.08577 * 179.72176 * 4 3 2 36 36 H 1.07993 * 126.14010 * 0.29378 * 6 5 4 37 37 H 1.09001 * 109.46792 * 202.71220 * 11 10 8 38 38 H 1.08993 * 109.47090 * 322.72058 * 11 10 8 39 39 H 0.97003 * 119.99968 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.47418 * 210.00774 * 20 10 8 41 41 H 1.09003 * 109.46845 * 330.00482 * 20 10 8 42 42 H 1.07998 * 120.79291 * 0.02562 * 22 21 20 43 43 H 1.07999 * 120.42086 * 180.21683 * 23 22 21 44 44 H 1.08001 * 119.61527 * 179.74557 * 24 23 22 45 45 H 1.07993 * 119.62039 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.09487 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2072 0.0000 4 6 3.5590 1.2295 -0.0051 5 6 4.2758 0.0258 0.0000 6 6 5.6575 -0.2831 0.0002 7 6 5.7788 -1.6364 0.0000 8 6 7.0484 -2.3786 -0.0004 9 8 8.0939 -1.7952 -0.2158 10 7 7.0536 -3.7051 0.2380 11 6 5.7901 -4.4171 0.4450 12 6 5.1800 -4.7563 -0.8905 13 1 5.6829 -4.4698 -1.8023 14 6 3.9798 -5.4324 -0.9484 15 7 3.3676 -5.7817 0.1619 16 14 3.2238 -5.8535 -2.6039 17 1 4.1589 -6.7161 -3.3700 18 1 1.9430 -6.5751 -2.3941 19 1 2.9684 -4.6035 -3.3638 20 6 8.3227 -4.4350 0.2901 21 6 8.8450 -4.4341 1.7037 22 6 9.6858 -3.4217 2.1409 23 6 10.1382 -3.4593 3.4508 24 6 9.7476 -4.5030 4.2684 25 7 8.9507 -5.4516 3.8171 26 6 8.4972 -5.4454 2.5787 27 7 4.5193 -2.2040 -0.0010 28 1 4.3285 -3.1551 -0.0010 29 6 3.5809 -1.1994 -0.0008 30 6 2.1886 -1.1961 -0.0005 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6445 2.1364 0.0004 35 1 4.0850 2.1728 -0.0096 36 1 6.4694 0.4290 0.0006 37 1 5.9773 -5.3348 1.0025 38 1 5.1041 -3.7837 1.0075 39 1 2.5233 -6.2577 0.1212 40 1 8.1648 -5.4623 -0.0383 41 1 9.0471 -3.9514 -0.3652 42 1 9.9780 -2.6208 1.4778 43 1 10.7914 -2.6854 3.8261 44 1 10.0990 -4.5418 5.2890 45 1 7.8465 -6.2399 2.2447 46 1 1.6449 -2.1293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069419676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:02 Heat of formation + Delta-G solvation = 67.786198 kcal Electronic energy + Delta-G solvation = -30401.597687 eV Core-core repulsion = 26449.854684 eV Total energy + Delta-G solvation = -3951.743003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.15993 -40.07148 -38.83668 -36.77047 -35.65446 -33.51329 -32.35519 -32.10351 -31.43560 -30.18524 -29.05806 -27.77871 -26.94824 -25.51318 -23.67336 -23.21563 -22.87707 -21.80763 -20.80109 -20.30608 -19.09155 -17.20453 -17.05342 -16.61872 -16.58267 -16.00481 -15.67390 -15.32615 -15.11129 -14.77859 -14.52122 -14.23997 -13.86228 -13.67826 -13.52823 -13.30778 -13.19343 -12.89633 -12.87070 -12.76154 -12.60922 -12.29811 -11.96106 -11.90564 -11.64529 -11.39148 -11.33824 -11.21871 -10.95596 -10.73206 -10.54099 -10.38970 -10.18231 -9.73971 -9.51780 -9.33709 -9.31134 -8.97282 -8.84427 -8.14006 -7.68298 -7.18850 -6.58245 -4.72658 1.21095 1.25604 1.45234 2.07556 2.59530 3.04843 3.10850 3.14031 3.51133 3.78322 3.95418 4.05546 4.12956 4.28101 4.59522 4.72926 4.93344 5.04920 5.06357 5.15236 5.18500 5.21770 5.26622 5.45803 5.50920 5.58819 5.76062 5.78641 5.79993 5.83988 5.93758 6.00984 6.01575 6.07575 6.23070 6.25972 6.28255 6.39916 6.45917 6.49518 6.71250 6.85313 6.86911 6.95102 7.04940 7.18523 7.21051 7.38315 7.54577 7.61730 7.92219 8.11400 8.31859 8.40272 8.66904 8.98810 10.44318 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.004096 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.398538 B = 6834.912222 C = 8739.634970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.075 4.075 3 C -0.155 4.155 4 C -0.066 4.066 5 C -0.126 4.126 6 C -0.142 4.142 7 C 0.039 3.961 8 C 0.585 3.415 9 O -0.553 6.553 10 N -0.588 5.588 11 C 0.216 3.784 12 C -0.564 4.564 13 H 0.071 0.929 14 C 0.068 3.932 15 N -0.878 5.878 16 Si 0.899 3.101 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.270 1.270 20 C 0.161 3.839 21 C -0.149 4.149 22 C -0.055 4.055 23 C -0.180 4.180 24 C 0.091 3.909 25 N -0.489 5.489 26 C 0.114 3.886 27 N -0.549 5.549 28 H 0.453 0.547 29 C 0.104 3.896 30 C -0.122 4.122 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.275 0.725 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.139 0.861 43 H 0.131 0.869 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 6.718 2.997 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.174 4.174 4 C -0.085 4.085 5 C -0.131 4.131 6 C -0.169 4.169 7 C -0.074 4.074 8 C 0.374 3.626 9 O -0.432 6.432 10 N -0.318 5.318 11 C 0.096 3.904 12 C -0.602 4.602 13 H 0.089 0.911 14 C -0.138 4.138 15 N -0.514 5.514 16 Si 0.725 3.275 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.195 1.195 20 C 0.038 3.962 21 C -0.152 4.152 22 C -0.082 4.082 23 C -0.200 4.200 24 C -0.066 4.066 25 N -0.197 5.197 26 C -0.043 4.043 27 N -0.166 5.166 28 H 0.313 0.687 29 C -0.009 4.009 30 C -0.142 4.142 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.163 0.837 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.157 0.843 43 H 0.149 0.851 44 H 0.168 0.832 45 H 0.174 0.826 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.560 5.912 3.525 7.344 hybrid contribution -0.400 -0.123 -1.351 1.414 sum 2.160 5.789 2.174 6.550 Atomic orbital electron populations 1.20729 0.91494 1.02341 1.01939 1.19471 0.95386 0.92304 1.00506 1.20350 0.93880 0.96888 1.06249 1.20250 0.93549 0.95954 0.98720 1.18203 0.93075 0.92905 1.08909 1.20662 0.95015 0.93047 1.08182 1.20081 0.85176 0.92861 1.09332 1.17279 0.86962 0.81720 0.76626 1.90709 1.31987 1.68928 1.51622 1.48109 1.08203 1.07008 1.68452 1.19884 0.79696 0.93419 0.97422 1.21569 1.06608 1.39187 0.92866 0.91091 1.25069 0.96714 0.94337 0.97694 1.69917 1.17221 1.37432 1.26844 0.86486 0.78691 0.79308 0.83047 1.19482 1.20577 1.19531 1.20195 0.86234 0.98414 0.91392 1.21396 0.98594 0.96351 0.98887 1.21681 0.93829 0.96974 0.95673 1.22124 1.02519 1.00326 0.94999 1.22720 0.93918 0.90193 0.99746 1.67703 1.10140 1.26288 1.15579 1.22783 0.95906 0.97140 0.88459 1.44475 1.03051 1.11350 1.57714 0.68697 1.18513 0.91202 0.88554 1.02653 1.19962 0.90318 0.98164 1.05778 0.91514 0.91840 0.91806 0.86647 0.86469 0.83661 0.93166 0.94209 0.91509 0.88807 0.89219 0.84326 0.85094 0.83181 0.82595 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.99 36.01 0.36 -0.90 16 2 C -0.07 -1.13 5.88 -104.57 -0.61 -1.75 16 3 C -0.15 -2.21 9.61 -39.97 -0.38 -2.60 16 4 C -0.07 -1.02 10.06 -39.53 -0.40 -1.42 16 5 C -0.13 -2.35 6.16 -106.93 -0.66 -3.01 16 6 C -0.14 -2.72 10.55 -39.15 -0.41 -3.13 16 7 C 0.04 0.81 6.56 -82.29 -0.54 0.27 16 8 C 0.59 12.28 7.57 -12.68 -0.10 12.19 16 9 O -0.55 -11.82 16.20 5.23 0.08 -11.74 16 10 N -0.59 -11.70 2.46 -177.84 -0.44 -12.14 16 11 C 0.22 4.74 4.72 -5.19 -0.02 4.72 16 12 C -0.56 -13.27 7.32 -34.44 -0.25 -13.52 16 13 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.07 1.63 5.06 -17.82 -0.09 1.54 16 15 N -0.88 -21.60 13.29 55.43 0.74 -20.87 16 16 Si 0.90 19.11 29.54 -169.99 -5.02 14.09 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 20 C 0.16 2.70 5.54 -5.20 -0.03 2.68 16 21 C -0.15 -2.36 5.48 -104.48 -0.57 -2.93 16 22 C -0.06 -0.81 9.86 -39.27 -0.39 -1.20 16 23 C -0.18 -2.30 10.11 -39.44 -0.40 -2.70 16 24 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 25 N -0.49 -7.76 10.36 -13.26 -0.14 -7.89 16 26 C 0.11 1.82 10.86 -17.55 -0.19 1.63 16 27 N -0.55 -11.83 4.85 -7.35 -0.04 -11.87 16 28 H 0.45 10.29 3.22 -40.82 -0.13 10.16 16 29 C 0.10 2.10 7.25 -83.98 -0.61 1.49 16 30 C -0.12 -2.19 9.71 -39.42 -0.38 -2.57 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.15 2.50 8.06 -52.49 -0.42 2.08 16 37 H 0.05 1.12 8.02 -51.93 -0.42 0.71 16 38 H 0.04 0.94 5.13 -51.93 -0.27 0.68 16 39 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 40 H 0.09 1.47 8.02 -51.93 -0.42 1.05 16 41 H 0.09 1.47 7.34 -51.93 -0.38 1.09 16 42 H 0.14 2.04 7.82 -52.49 -0.41 1.62 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.16 2.38 8.06 -52.49 -0.42 1.95 16 46 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -27.21 387.87 -10.63 -37.84 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -5.79 Total: 16.93 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -5.88 Total: -10.20 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.13 Total: -52.76 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -27.21 -10.63 -37.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069419676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.625 kcal (2) G-P(sol) polarization free energy of solvation -27.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds