Wall clock time and date at job start Tue Mar 31 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99851 * 2 1 4 4 H 1.48503 * 109.46924 * 269.99800 * 3 2 1 5 5 H 1.48499 * 109.47472 * 29.99786 * 3 2 1 6 6 H 1.48501 * 109.47283 * 150.00102 * 3 2 1 7 7 C 1.37877 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00022 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00037 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47310 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99658 * 89.99973 * 10 9 7 12 12 C 1.50701 * 109.46992 * 90.00121 * 11 10 9 13 13 C 1.34518 * 125.78832 * 89.71314 * 12 11 10 14 14 C 1.41377 * 106.83972 * 179.88997 * 13 12 11 15 15 C 1.34513 * 106.84156 * 0.37021 * 14 13 12 16 16 O 1.34300 * 125.78840 * 270.02396 * 12 11 10 17 17 C 1.34775 * 120.00005 * 270.00108 * 10 9 7 18 18 O 1.21285 * 119.99996 * 179.97438 * 17 10 9 19 19 C 1.50698 * 120.00318 * 0.02562 * 17 10 9 20 20 C 1.53001 * 109.47377 * 179.97438 * 19 17 10 21 21 C 1.50703 * 109.47161 * 179.97438 * 20 19 17 22 22 C 1.38207 * 120.00067 * 264.72487 * 21 20 19 23 23 C 1.38422 * 120.00109 * 179.77265 * 22 21 20 24 24 F 1.35101 * 120.00310 * 180.26956 * 23 22 21 25 25 C 1.38473 * 119.99660 * 0.52348 * 23 22 21 26 26 C 1.38159 * 120.00402 * 359.72813 * 25 23 22 27 27 C 1.38431 * 119.99869 * 85.00072 * 21 20 19 28 28 F 1.35097 * 120.00057 * 359.97309 * 27 21 20 29 29 H 0.96994 * 120.00272 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46987 * 60.00023 * 9 7 2 31 31 H 1.08994 * 109.46951 * 300.00230 * 9 7 2 32 32 H 1.09002 * 109.47391 * 330.00112 * 11 10 9 33 33 H 1.09001 * 109.46813 * 210.00168 * 11 10 9 34 34 H 1.08007 * 126.57748 * 0.02871 * 13 12 11 35 35 H 1.07997 * 126.57885 * 180.16682 * 14 13 12 36 36 H 1.08002 * 125.78655 * 179.74823 * 15 14 13 37 37 H 1.09006 * 109.47054 * 299.99977 * 19 17 10 38 38 H 1.09003 * 109.47164 * 59.99309 * 19 17 10 39 39 H 1.08997 * 109.46529 * 299.99810 * 20 19 17 40 40 H 1.08998 * 109.46873 * 59.99924 * 20 19 17 41 41 H 1.08001 * 119.99622 * 0.02562 * 22 21 20 42 42 H 1.08004 * 120.00335 * 179.70598 * 25 23 22 43 43 H 1.07999 * 120.00244 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 4.2436 -3.2672 -1.2668 12 6 5.6667 -3.0308 -1.7026 13 6 6.7257 -3.7947 -1.3792 14 6 7.8550 -3.2131 -1.9998 15 6 7.4200 -2.1240 -2.6585 16 8 6.0937 -2.0184 -2.4749 17 6 4.2250 -3.2093 1.1691 18 8 4.6289 -4.3529 1.1702 19 6 3.9738 -2.4977 2.4735 20 6 4.3052 -3.4340 3.6374 21 6 4.0545 -2.7221 4.9418 22 6 5.0951 -2.0886 5.5944 23 6 4.8640 -1.4307 6.7902 24 9 5.8800 -0.8067 7.4254 25 6 3.5923 -1.4166 7.3380 26 6 2.5531 -2.0544 6.6883 27 6 2.7831 -2.7077 5.4893 28 9 1.7670 -3.3313 4.8539 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6796 0.8894 31 1 3.8745 -0.6808 -0.8905 32 1 3.5625 -2.8839 -2.0266 33 1 4.0767 -4.3363 -1.1352 34 1 6.7148 -4.6833 -0.7654 35 1 8.8723 -3.5724 -1.9513 36 1 8.0334 -1.4486 -3.2366 37 1 4.6037 -1.6099 2.5303 38 1 2.9257 -2.2038 2.5311 39 1 3.6750 -4.3215 3.5804 40 1 5.3532 -3.7281 3.5799 41 1 6.0878 -2.1033 5.1693 42 1 3.4128 -0.9074 8.2734 43 1 1.5613 -2.0437 7.1158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069490604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:13 Heat of formation + Delta-G solvation = -103.552671 kcal Electronic energy + Delta-G solvation = -30334.227983 eV Core-core repulsion = 25788.532888 eV Total energy + Delta-G solvation = -4545.695095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.128 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.94432 -49.93324 -43.47114 -40.95157 -39.87917 -37.00224 -35.24288 -34.63756 -33.90140 -32.28933 -31.36241 -30.45402 -29.64781 -27.37265 -25.50043 -24.42140 -23.92996 -22.60057 -22.46294 -21.52185 -20.01375 -19.18765 -18.71194 -18.41822 -18.25644 -18.17581 -17.69444 -17.45698 -16.88253 -16.60457 -16.46736 -16.33174 -16.01771 -15.51305 -15.36542 -15.30571 -14.89929 -14.57465 -14.46876 -14.23362 -13.86458 -13.80903 -13.72535 -13.70712 -13.57300 -13.42135 -13.40719 -12.97396 -12.71038 -12.63675 -12.44115 -12.09706 -11.98694 -11.93524 -11.72789 -10.96697 -10.83847 -10.75362 -10.12712 -9.68164 -9.54651 -9.39644 -8.31384 -6.38835 -0.09587 0.01587 0.72610 1.37589 1.38664 1.47486 1.61158 1.67938 2.12347 2.28400 2.31994 2.43949 3.02271 3.10682 3.21213 3.42486 3.63417 3.77785 3.83800 4.01667 4.04249 4.08911 4.16536 4.19960 4.21742 4.37917 4.51229 4.57430 4.64605 4.74136 4.78703 4.84164 4.92308 4.95420 5.00289 5.01284 5.05133 5.12093 5.19590 5.22965 5.40840 5.52395 5.62580 5.77786 6.13732 6.23883 6.52103 6.67174 7.16650 7.28756 8.84652 Molecular weight = 349.13amu Principal moments of inertia in cm(-1) A = 0.007989 B = 0.003821 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.882191 B = 7326.273478 C = 9052.765805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.540 4.540 8 H 0.035 0.965 9 C 0.220 3.780 10 N -0.593 5.593 11 C 0.195 3.805 12 C -0.046 4.046 13 C -0.197 4.197 14 C -0.225 4.225 15 C -0.038 4.038 16 O -0.192 6.192 17 C 0.520 3.480 18 O -0.577 6.577 19 C -0.127 4.127 20 C -0.054 4.054 21 C -0.092 4.092 22 C -0.121 4.121 23 C 0.083 3.917 24 F -0.138 7.138 25 C -0.120 4.120 26 C -0.120 4.120 27 C 0.071 3.929 28 F -0.146 7.146 29 H 0.269 0.731 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.144 0.856 35 H 0.173 0.827 36 H 0.241 0.759 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.160 0.840 42 H 0.174 0.826 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.164 -1.386 8.911 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.176 4.176 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.162 1.162 7 C -0.578 4.578 8 H 0.053 0.947 9 C 0.098 3.902 10 N -0.322 5.322 11 C 0.072 3.928 12 C -0.096 4.096 13 C -0.217 4.217 14 C -0.244 4.244 15 C -0.105 4.105 16 O -0.088 6.088 17 C 0.310 3.690 18 O -0.459 6.459 19 C -0.166 4.166 20 C -0.092 4.092 21 C -0.093 4.093 22 C -0.140 4.140 23 C 0.063 3.937 24 F -0.117 7.117 25 C -0.138 4.138 26 C -0.138 4.138 27 C 0.052 3.948 28 F -0.125 7.125 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.161 0.839 35 H 0.190 0.810 36 H 0.257 0.743 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.178 0.822 42 H 0.191 0.809 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 14.005 -1.634 8.787 16.614 hybrid contribution -0.366 0.493 -0.312 0.689 sum 13.639 -1.141 8.475 16.099 Atomic orbital electron populations 1.70036 1.08231 1.28350 1.51121 1.25704 0.95397 1.02780 0.93678 0.85921 0.79973 0.78948 0.79531 1.19110 1.20774 1.16215 1.21462 0.90939 0.93416 1.52015 0.94674 1.19635 0.93133 0.78977 0.98475 1.48013 1.63588 1.15702 1.04943 1.19663 0.88102 0.98980 0.86019 1.22927 0.97730 0.90218 0.98770 1.21822 0.92416 1.02999 1.04507 1.22147 1.00784 0.98406 1.03054 1.24892 0.80637 1.01231 1.03766 1.84047 1.25198 1.43948 1.55614 1.20839 0.75796 0.86191 0.86145 1.90580 1.48503 1.18658 1.88110 1.21586 1.04459 0.99805 0.90784 1.20186 1.04017 0.96716 0.88265 1.19756 0.91888 1.00224 0.97481 1.21055 1.00679 0.97929 0.94328 1.17758 0.85532 0.97418 0.92965 1.91511 1.58600 1.80324 1.81262 1.21268 0.89896 1.00476 1.02175 1.21257 1.01955 0.97358 0.93263 1.18001 0.84626 0.98346 0.93824 1.91510 1.58654 1.80477 1.81839 0.92218 0.93309 0.94489 0.89070 0.87479 0.83860 0.80965 0.74280 0.87625 0.89474 0.91127 0.88588 0.82225 0.80853 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.53 13.96 21.45 0.30 -55.23 16 2 C 0.02 1.29 5.47 84.65 0.46 1.76 16 3 Si 0.93 40.20 27.47 68.60 1.88 42.08 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 7 C -0.54 -28.68 9.83 25.60 0.25 -28.43 16 8 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 9 C 0.22 9.56 4.03 85.63 0.35 9.91 16 10 N -0.59 -23.98 2.44 -830.50 -2.03 -26.01 16 11 C 0.20 7.21 5.94 85.63 0.51 7.72 16 12 C -0.05 -1.54 6.90 24.83 0.17 -1.37 16 13 C -0.20 -6.07 10.81 22.19 0.24 -5.83 16 14 C -0.23 -5.49 10.91 22.19 0.24 -5.25 16 15 C -0.04 -0.89 12.09 66.97 0.81 -0.08 16 16 O -0.19 -6.14 10.65 -2.50 -0.03 -6.17 16 17 C 0.52 20.44 7.67 87.66 0.67 21.12 16 18 O -0.58 -23.84 15.56 -3.05 -0.05 -23.88 16 19 C -0.13 -4.36 4.23 29.85 0.13 -4.23 16 20 C -0.05 -1.59 4.41 29.85 0.13 -1.46 16 21 C -0.09 -2.40 5.14 -19.82 -0.10 -2.50 16 22 C -0.12 -2.64 9.66 22.31 0.22 -2.42 16 23 C 0.08 1.69 7.30 22.37 0.16 1.85 16 24 F -0.14 -2.87 17.27 44.97 0.78 -2.10 16 25 C -0.12 -2.10 10.02 22.31 0.22 -1.88 16 26 C -0.12 -2.44 10.02 22.31 0.22 -2.22 16 27 C 0.07 1.92 7.24 22.37 0.16 2.09 16 28 F -0.15 -4.75 16.57 44.97 0.74 -4.01 16 29 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.05 2.01 5.49 -2.39 -0.01 2.00 16 31 H 0.04 1.59 7.50 -2.39 -0.02 1.57 16 32 H 0.09 3.39 8.07 -2.39 -0.02 3.37 16 33 H 0.11 3.87 7.42 -2.39 -0.02 3.85 16 34 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 35 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.24 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.11 3.24 7.40 -2.38 -0.02 3.22 16 38 H 0.09 3.45 8.00 -2.39 -0.02 3.43 16 39 H 0.07 2.28 7.75 -2.39 -0.02 2.27 16 40 H 0.10 2.54 8.01 -2.39 -0.02 2.53 16 41 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 43 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -67.93 380.71 7.44 -60.49 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.99 Total: 26.06 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.85 Total: -11.23 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -1.73 Total: -81.24 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.07 Total: -30.05 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 1.52 Total: -6.11 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.88 Total: 42.08 kcal Total: -67.93 7.44 -60.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069490604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.064 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds