Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48500 * 109.47177 * 269.99995 * 3 2 1 5 5 H 1.48499 * 109.47079 * 29.99716 * 3 2 1 6 6 H 1.48501 * 109.46996 * 149.99996 * 3 2 1 7 7 C 1.37881 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99886 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99845 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46900 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.46865 * 179.97438 * 10 9 7 12 12 C 1.35979 * 116.99773 * 180.02562 * 11 10 9 13 13 C 1.38791 * 120.50072 * 0.23204 * 12 11 10 14 14 C 1.38778 * 118.45249 * 180.26839 * 13 12 11 15 15 C 1.38091 * 119.35545 * 359.49884 * 14 13 12 16 16 N 1.31952 * 120.95500 * 0.26040 * 15 14 13 17 17 C 1.32288 * 121.69210 * 359.97438 * 16 15 14 18 18 N 1.39492 * 119.72860 * 180.02562 * 17 16 15 19 19 C 1.34770 * 120.00048 * 359.97438 * 18 17 16 20 20 O 1.21560 * 120.00354 * 0.02562 * 19 18 17 21 21 C 1.47826 * 119.99865 * 180.02562 * 19 18 17 22 22 C 1.39561 * 120.12241 * 359.72336 * 21 19 18 23 23 C 1.38194 * 119.87600 * 179.79189 * 22 21 19 24 24 F 1.35101 * 119.94252 * 180.23378 * 23 22 21 25 25 C 1.38539 * 120.12210 * 0.48773 * 23 22 21 26 26 C 1.38536 * 120.24659 * 359.74362 * 25 23 22 27 27 F 1.35097 * 119.93899 * 180.02562 * 26 25 23 28 28 C 1.38193 * 120.12289 * 0.02580 * 26 25 23 29 29 H 0.97005 * 119.99924 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47264 * 59.99822 * 9 7 2 31 31 H 1.09005 * 109.46852 * 299.99927 * 9 7 2 32 32 H 1.09000 * 109.47219 * 59.99902 * 10 9 7 33 33 H 1.08992 * 109.47310 * 299.99607 * 10 9 7 34 34 H 1.08001 * 120.77360 * 0.03816 * 13 12 11 35 35 H 1.08002 * 120.32573 * 179.78408 * 14 13 12 36 36 H 1.07995 * 119.52009 * 180.23506 * 15 14 13 37 37 H 0.96997 * 119.99473 * 180.02562 * 18 17 16 38 38 H 1.08000 * 120.06236 * 0.02716 * 22 21 19 39 39 H 1.07995 * 119.87373 * 179.76863 * 25 23 22 40 40 H 1.08000 * 120.06175 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 8 5.4505 -2.6365 -0.0001 12 6 6.0679 -3.8481 -0.0008 13 6 5.3221 -5.0186 -0.0062 14 6 5.9959 -6.2319 -0.0009 15 6 7.3768 -6.2393 -0.0011 16 7 8.0616 -5.1114 -0.0010 17 6 7.4602 -3.9332 -0.0013 18 7 8.2245 -2.7663 -0.0017 19 6 9.5701 -2.8422 -0.0013 20 8 10.1177 -3.9275 -0.0010 21 6 10.3801 -1.6056 -0.0012 22 6 9.7541 -0.3583 -0.0073 23 6 10.5163 0.7944 -0.0028 24 9 9.9117 2.0026 -0.0040 25 6 11.8993 0.7135 -0.0025 26 6 12.5260 -0.5220 -0.0012 27 9 13.8751 -0.5937 -0.0004 28 6 11.7738 -1.6812 -0.0009 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6808 0.8905 31 1 3.8752 -0.6796 -0.8895 32 1 3.6585 -3.1502 -0.8903 33 1 3.6579 -3.1505 0.8896 34 1 4.2426 -4.9861 -0.0106 35 1 5.4457 -7.1612 -0.0014 36 1 7.9039 -7.1819 -0.0009 37 1 7.7875 -1.9004 -0.0015 38 1 8.6760 -0.2941 -0.0117 39 1 12.4910 1.6169 -0.0027 40 1 12.2634 -2.6439 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069518272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = -85.509036 kcal Electronic energy + Delta-G solvation = -28884.321962 eV Core-core repulsion = 24301.294865 eV Total energy + Delta-G solvation = -4583.027097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.46721 -49.41713 -41.20989 -40.01677 -38.43627 -37.85440 -35.16927 -33.49541 -32.19066 -31.61947 -30.99396 -30.73652 -29.26552 -25.77542 -25.30219 -23.53677 -23.18456 -22.80074 -21.12487 -20.53885 -19.25016 -18.31528 -17.88516 -17.46825 -16.95498 -16.84257 -16.59527 -16.48182 -16.02503 -15.99422 -15.79940 -15.73507 -15.20908 -15.04235 -14.79554 -14.41187 -14.26847 -14.09164 -13.74005 -13.23633 -13.14468 -12.64633 -12.49080 -12.40816 -12.32398 -12.25673 -12.14576 -11.30801 -11.03589 -10.93494 -10.64033 -10.37367 -10.21263 -9.97435 -9.65664 -9.49206 -9.37546 -9.30985 -9.27159 -8.72777 -7.85602 -6.23522 -4.25637 0.01281 0.43163 1.09263 1.30246 2.31786 2.49138 3.14199 3.20074 3.28050 3.30594 3.31599 3.33318 3.78758 3.87195 3.92060 4.22339 4.28987 4.35548 4.46011 4.55160 4.82435 4.89233 4.97140 5.09467 5.10251 5.22604 5.33346 5.34685 5.44072 5.53194 5.69224 5.72763 5.90658 6.03918 6.12973 6.17089 6.28074 6.42836 6.86714 6.97926 7.06720 7.42117 7.55522 7.78703 8.10575 8.27024 8.76474 9.35947 10.88840 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.003209 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.163203 B = 8724.269209 C =12086.983141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.073 3.927 11 O -0.321 6.321 12 C 0.070 3.930 13 C -0.145 4.145 14 C -0.155 4.155 15 C 0.077 3.923 16 N -0.443 5.443 17 C 0.325 3.675 18 N -0.644 5.644 19 C 0.552 3.448 20 O -0.464 6.464 21 C -0.071 4.071 22 C -0.133 4.133 23 C 0.131 3.869 24 F -0.123 7.123 25 C -0.169 4.169 26 C 0.126 3.874 27 F -0.126 7.126 28 C -0.105 4.105 29 H 0.267 0.733 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.159 0.841 37 H 0.423 0.577 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.121 -4.236 0.008 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.093 0.907 9 C -0.045 4.045 10 C -0.001 4.001 11 O -0.234 6.234 12 C 0.019 3.981 13 C -0.172 4.172 14 C -0.176 4.176 15 C -0.079 4.079 16 N -0.158 5.158 17 C 0.093 3.907 18 N -0.293 5.293 19 C 0.337 3.663 20 O -0.334 6.334 21 C -0.075 4.075 22 C -0.153 4.153 23 C 0.112 3.888 24 F -0.101 7.101 25 C -0.189 4.189 26 C 0.107 3.893 27 F -0.104 7.104 28 C -0.125 4.125 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.166 0.834 35 H 0.155 0.845 36 H 0.176 0.824 37 H 0.262 0.738 38 H 0.168 0.832 39 H 0.172 0.828 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 23.408 -4.633 0.011 23.862 hybrid contribution -1.044 1.507 -0.019 1.834 sum 22.364 -3.126 -0.008 22.582 Atomic orbital electron populations 1.69885 1.06304 1.27349 1.49746 1.24935 0.94763 0.99228 0.94009 0.86766 0.80421 0.83310 0.78798 1.20003 1.21105 1.18776 1.20795 0.88178 0.94985 1.52838 0.90713 1.19589 0.97095 0.89895 0.97929 1.23171 0.73737 1.02376 1.00793 1.86043 1.24784 1.24750 1.87774 1.19525 0.90871 0.87099 1.00624 1.21657 1.01389 0.91324 1.02793 1.21950 0.95521 0.98347 1.01749 1.22442 0.91163 0.95516 0.98814 1.67593 1.38556 0.96298 1.13332 1.17674 0.84492 0.86918 1.01624 1.43235 1.05945 1.08246 1.71861 1.18045 0.81644 0.88663 0.77930 1.90903 1.70648 1.27920 1.43932 1.19497 0.93309 0.92516 1.02139 1.21476 1.01646 0.90583 1.01564 1.17056 0.89870 0.80794 1.01128 1.91598 1.83262 1.41767 1.93505 1.21260 0.93894 0.98740 1.04959 1.17054 0.77485 0.93084 1.01688 1.91569 1.28120 1.97066 1.93636 1.21272 0.92650 0.99138 0.99400 0.92328 0.95356 0.95778 0.92228 0.92192 0.83419 0.84498 0.82361 0.73764 0.83150 0.82759 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.96 55.43 0.77 -25.43 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.44 27.47 -169.99 -4.67 15.78 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 7 C -0.53 -14.03 9.66 -34.44 -0.33 -14.36 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.01 -0.17 4.41 -27.89 -0.12 -0.29 16 10 C 0.07 1.32 4.70 37.16 0.17 1.49 16 11 O -0.32 -5.25 9.38 -19.67 -0.18 -5.44 16 12 C 0.07 1.05 6.72 -38.91 -0.26 0.79 16 13 C -0.14 -1.91 9.14 -39.18 -0.36 -2.27 16 14 C -0.15 -1.73 10.10 -39.44 -0.40 -2.13 16 15 C 0.08 0.95 11.17 -17.55 -0.20 0.75 16 16 N -0.44 -6.74 7.87 -12.24 -0.10 -6.84 16 17 C 0.33 4.87 7.44 -154.50 -1.15 3.72 16 18 N -0.64 -8.42 5.34 -12.16 -0.06 -8.49 16 19 C 0.55 7.15 7.74 -12.34 -0.10 7.05 16 20 O -0.46 -7.34 14.59 5.31 0.08 -7.26 16 21 C -0.07 -0.72 5.87 -104.98 -0.62 -1.33 16 22 C -0.13 -1.19 9.52 -39.10 -0.37 -1.56 16 23 C 0.13 1.15 7.29 -39.49 -0.29 0.86 16 24 F -0.12 -1.21 17.26 2.25 0.04 -1.17 16 25 C -0.17 -1.30 10.00 -39.36 -0.39 -1.69 16 26 C 0.13 1.07 7.29 -39.49 -0.29 0.78 16 27 F -0.13 -1.10 17.26 2.25 0.04 -1.06 16 28 C -0.10 -0.97 9.57 -39.10 -0.37 -1.35 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 31 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 32 H 0.06 1.03 7.69 -51.93 -0.40 0.63 16 33 H 0.06 1.04 7.71 -51.93 -0.40 0.64 16 34 H 0.15 1.81 6.44 -52.49 -0.34 1.48 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.42 4.75 6.07 -40.82 -0.25 4.50 16 38 H 0.15 1.18 6.40 -52.49 -0.34 0.84 16 39 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.16 1.43 7.65 -52.49 -0.40 1.03 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -31.73 357.19 -7.62 -39.35 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.74 Total: 2.78 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -5.17 Total: -7.61 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.61 Total: -40.75 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.11 Total: -12.70 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.08 Total: -2.23 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.73 -7.62 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069518272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.160 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds