Wall clock time and date at job start Tue Mar 31 2020 05:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48500 * 109.47177 * 269.99995 * 3 2 1 5 5 H 1.48499 * 109.47079 * 29.99716 * 3 2 1 6 6 H 1.48501 * 109.46996 * 149.99996 * 3 2 1 7 7 C 1.37881 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99886 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99845 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46900 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.46865 * 179.97438 * 10 9 7 12 12 C 1.35979 * 116.99773 * 180.02562 * 11 10 9 13 13 C 1.38791 * 120.50072 * 0.23204 * 12 11 10 14 14 C 1.38778 * 118.45249 * 180.26839 * 13 12 11 15 15 C 1.38091 * 119.35545 * 359.49884 * 14 13 12 16 16 N 1.31952 * 120.95500 * 0.26040 * 15 14 13 17 17 C 1.32288 * 121.69210 * 359.97438 * 16 15 14 18 18 N 1.39492 * 119.72860 * 180.02562 * 17 16 15 19 19 C 1.34770 * 120.00048 * 359.97438 * 18 17 16 20 20 O 1.21560 * 120.00354 * 0.02562 * 19 18 17 21 21 C 1.47826 * 119.99865 * 180.02562 * 19 18 17 22 22 C 1.39561 * 120.12241 * 359.72336 * 21 19 18 23 23 C 1.38194 * 119.87600 * 179.79189 * 22 21 19 24 24 F 1.35101 * 119.94252 * 180.23378 * 23 22 21 25 25 C 1.38539 * 120.12210 * 0.48773 * 23 22 21 26 26 C 1.38536 * 120.24659 * 359.74362 * 25 23 22 27 27 F 1.35097 * 119.93899 * 180.02562 * 26 25 23 28 28 C 1.38193 * 120.12289 * 0.02580 * 26 25 23 29 29 H 0.97005 * 119.99924 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47264 * 59.99822 * 9 7 2 31 31 H 1.09005 * 109.46852 * 299.99927 * 9 7 2 32 32 H 1.09000 * 109.47219 * 59.99902 * 10 9 7 33 33 H 1.08992 * 109.47310 * 299.99607 * 10 9 7 34 34 H 1.08001 * 120.77360 * 0.03816 * 13 12 11 35 35 H 1.08002 * 120.32573 * 179.78408 * 14 13 12 36 36 H 1.07995 * 119.52009 * 180.23506 * 15 14 13 37 37 H 0.96997 * 119.99473 * 180.02562 * 18 17 16 38 38 H 1.08000 * 120.06236 * 0.02716 * 22 21 19 39 39 H 1.07995 * 119.87373 * 179.76863 * 25 23 22 40 40 H 1.08000 * 120.06175 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 8 5.4505 -2.6365 -0.0001 12 6 6.0679 -3.8481 -0.0008 13 6 5.3221 -5.0186 -0.0062 14 6 5.9959 -6.2319 -0.0009 15 6 7.3768 -6.2393 -0.0011 16 7 8.0616 -5.1114 -0.0010 17 6 7.4602 -3.9332 -0.0013 18 7 8.2245 -2.7663 -0.0017 19 6 9.5701 -2.8422 -0.0013 20 8 10.1177 -3.9275 -0.0010 21 6 10.3801 -1.6056 -0.0012 22 6 9.7541 -0.3583 -0.0073 23 6 10.5163 0.7944 -0.0028 24 9 9.9117 2.0026 -0.0040 25 6 11.8993 0.7135 -0.0025 26 6 12.5260 -0.5220 -0.0012 27 9 13.8751 -0.5937 -0.0004 28 6 11.7738 -1.6812 -0.0009 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6808 0.8905 31 1 3.8752 -0.6796 -0.8895 32 1 3.6585 -3.1502 -0.8903 33 1 3.6579 -3.1505 0.8896 34 1 4.2426 -4.9861 -0.0106 35 1 5.4457 -7.1612 -0.0014 36 1 7.9039 -7.1819 -0.0009 37 1 7.7875 -1.9004 -0.0015 38 1 8.6760 -0.2941 -0.0117 39 1 12.4910 1.6169 -0.0027 40 1 12.2634 -2.6439 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069518272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:25 Heat of formation + Delta-G solvation = -103.450355 kcal Electronic energy + Delta-G solvation = -28885.099956 eV Core-core repulsion = 24301.294865 eV Total energy + Delta-G solvation = -4583.805091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.107 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.14945 -50.12847 -42.22690 -40.97463 -39.41990 -38.90321 -36.20503 -35.40161 -33.13473 -32.94359 -32.19365 -31.57018 -30.34647 -27.32217 -26.25321 -24.58402 -24.14011 -23.71152 -22.54173 -21.68379 -20.18802 -19.51107 -19.02837 -18.43509 -18.13104 -17.79509 -17.56906 -17.28609 -17.12846 -16.90205 -16.67965 -16.43330 -16.32793 -16.28803 -15.96553 -15.54562 -15.29355 -15.21085 -14.91649 -14.74044 -14.13455 -13.92985 -13.80540 -13.37624 -13.17067 -13.11656 -13.02055 -12.85501 -12.70980 -12.19391 -11.96718 -11.83718 -11.64966 -11.62687 -11.45390 -10.79771 -10.47697 -10.33437 -10.31268 -10.00894 -8.92534 -8.32879 -6.39585 -0.73676 -0.26274 0.11293 0.25951 1.38512 1.40430 1.48220 1.51380 1.56125 2.06788 2.32337 2.34713 2.60000 2.85683 3.03080 3.06647 3.12842 3.50512 3.58114 3.73369 3.75547 3.82820 3.96745 4.10255 4.21534 4.25071 4.29878 4.43231 4.53977 4.64777 4.67960 4.77300 4.82841 4.92998 5.05382 5.11882 5.17968 5.33639 5.46528 5.48666 5.57840 6.03583 6.16958 6.24412 6.67422 6.77394 7.12106 7.25805 8.82683 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.003209 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.163203 B = 8724.269209 C =12086.983141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.946 3.054 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.535 4.535 8 H 0.043 0.957 9 C -0.006 4.006 10 C 0.086 3.914 11 O -0.324 6.324 12 C 0.047 3.953 13 C -0.149 4.149 14 C -0.142 4.142 15 C 0.077 3.923 16 N -0.471 5.471 17 C 0.310 3.690 18 N -0.643 5.643 19 C 0.553 3.447 20 O -0.499 6.499 21 C -0.080 4.080 22 C -0.127 4.127 23 C 0.125 3.875 24 F -0.128 7.128 25 C -0.151 4.151 26 C 0.126 3.874 27 F -0.126 7.126 28 C -0.103 4.103 29 H 0.269 0.731 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.155 0.845 35 H 0.175 0.825 36 H 0.188 0.812 37 H 0.429 0.571 38 H 0.160 0.840 39 H 0.179 0.821 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.918 -3.917 0.001 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.061 0.939 9 C -0.044 4.044 10 C 0.012 3.988 11 O -0.238 6.238 12 C -0.003 4.003 13 C -0.175 4.175 14 C -0.162 4.162 15 C -0.080 4.080 16 N -0.187 5.187 17 C 0.079 3.921 18 N -0.292 5.292 19 C 0.341 3.659 20 O -0.372 6.372 21 C -0.084 4.084 22 C -0.146 4.146 23 C 0.105 3.895 24 F -0.106 7.106 25 C -0.170 4.170 26 C 0.106 3.894 27 F -0.105 7.105 28 C -0.123 4.123 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.172 0.828 35 H 0.192 0.808 36 H 0.205 0.795 37 H 0.270 0.730 38 H 0.177 0.823 39 H 0.196 0.804 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 25.223 -4.311 0.004 25.588 hybrid contribution -1.584 1.243 -0.019 2.013 sum 23.638 -3.068 -0.015 23.837 Atomic orbital electron populations 1.70031 1.08234 1.28425 1.51730 1.25880 0.95549 1.03340 0.93790 0.85721 0.79699 0.78336 0.79348 1.19091 1.21105 1.16663 1.21123 0.90705 0.93782 1.51669 0.93899 1.19444 0.94136 0.92649 0.98140 1.22771 0.75006 0.99851 1.01207 1.85963 1.23389 1.25846 1.88573 1.19643 0.91029 0.87035 1.02619 1.21913 1.01829 0.91602 1.02196 1.22310 0.95252 0.99025 0.99635 1.23060 0.91964 0.95801 0.97180 1.67656 1.39585 0.97078 1.14345 1.17847 0.84676 0.87481 1.02100 1.43287 1.06076 1.08223 1.71567 1.18401 0.81570 0.89135 0.76823 1.90871 1.71162 1.29363 1.45777 1.19209 0.93256 0.91707 1.04210 1.21533 1.02209 0.90227 1.00638 1.17064 0.90232 0.80435 1.01740 1.91590 1.83421 1.41970 1.93639 1.21457 0.93613 0.99291 1.02669 1.16985 0.77376 0.93026 1.01982 1.91571 1.28151 1.97067 1.93686 1.21295 0.92451 0.99575 0.98964 0.92236 0.95056 0.95162 0.91877 0.91886 0.82754 0.80805 0.79489 0.73041 0.82294 0.80380 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.42 13.96 21.45 0.30 -56.13 16 2 C 0.01 0.69 5.47 84.66 0.46 1.15 16 3 Si 0.95 41.59 27.47 68.60 1.88 43.47 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 7 C -0.53 -28.57 9.66 25.60 0.25 -28.32 16 8 H 0.04 2.49 7.99 -2.91 -0.02 2.46 16 9 C -0.01 -0.26 4.41 29.85 0.13 -0.13 16 10 C 0.09 3.03 4.70 71.98 0.34 3.37 16 11 O -0.32 -10.33 9.38 -93.31 -0.88 -11.21 16 12 C 0.05 1.38 6.72 22.70 0.15 1.53 16 13 C -0.15 -3.68 9.14 22.53 0.21 -3.48 16 14 C -0.14 -2.79 10.10 22.36 0.23 -2.56 16 15 C 0.08 1.71 11.17 84.64 0.95 2.66 16 16 N -0.47 -13.97 7.87 -192.63 -1.52 -15.49 16 17 C 0.31 9.16 7.44 133.02 0.99 10.15 16 18 N -0.64 -16.65 5.34 -310.66 -1.66 -18.31 16 19 C 0.55 14.33 7.74 86.78 0.67 15.00 16 20 O -0.50 -15.96 14.59 -3.90 -0.06 -16.01 16 21 C -0.08 -1.57 5.87 -20.10 -0.12 -1.69 16 22 C -0.13 -2.11 9.52 22.58 0.21 -1.89 16 23 C 0.12 1.95 7.29 22.33 0.16 2.11 16 24 F -0.13 -2.25 17.26 44.97 0.78 -1.47 16 25 C -0.15 -1.97 10.00 22.41 0.22 -1.74 16 26 C 0.13 1.92 7.29 22.33 0.16 2.08 16 27 F -0.13 -2.01 17.26 44.97 0.78 -1.24 16 28 C -0.10 -1.83 9.57 22.58 0.22 -1.62 16 29 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 30 H 0.03 1.32 7.20 -2.39 -0.02 1.31 16 31 H 0.03 1.26 7.57 -2.38 -0.02 1.24 16 32 H 0.06 2.15 7.69 -2.39 -0.02 2.13 16 33 H 0.06 2.15 7.71 -2.39 -0.02 2.13 16 34 H 0.15 3.55 6.44 -2.91 -0.02 3.53 16 35 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.19 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.43 9.45 6.07 -92.71 -0.56 8.88 16 38 H 0.16 2.29 6.40 -2.91 -0.02 2.27 16 39 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.16 2.81 7.65 -2.91 -0.02 2.79 16 Total: -1.00 -69.24 357.19 5.37 -63.87 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.51 Total: 15.90 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.23 Total: -3.38 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -2.88 Total: -89.92 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.93 Total: -27.22 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 1.55 Total: -2.71 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.88 Total: 43.47 kcal Total: -69.24 5.37 -63.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069518272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.583 kcal (2) G-P(sol) polarization free energy of solvation -69.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds