Wall clock time and date at job start Tue Mar 31 2020 04:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.46747 * 2 1 4 4 C 1.35662 * 116.99709 * 179.97438 * 3 2 1 5 5 C 1.39076 * 119.88419 * 180.02562 * 4 3 2 6 6 C 1.37123 * 120.11648 * 180.02562 * 5 4 3 7 7 C 1.40038 * 119.88238 * 359.97438 * 6 5 4 8 8 C 1.46851 * 120.11361 * 180.02562 * 7 6 5 9 9 O 1.21295 * 120.00279 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00136 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47238 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 10 8 13 13 O 1.21279 * 120.00218 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00208 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00107 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47558 * 90.00061 * 15 14 12 17 17 H 1.08003 * 119.99337 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99989 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99456 * 179.97438 * 18 16 15 20 20 Si 1.86791 * 120.00139 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46980 * 90.00027 * 20 18 16 22 22 H 1.48504 * 109.47074 * 209.99821 * 20 18 16 23 23 H 1.48497 * 109.47589 * 330.00025 * 20 18 16 24 24 C 1.46507 * 119.99730 * 0.02562 * 14 12 11 25 25 C 1.52997 * 109.46902 * 120.00224 * 24 14 12 26 26 C 1.53003 * 109.47040 * 240.00314 * 24 14 12 27 27 C 1.40044 * 119.77263 * 0.27186 * 7 6 5 28 28 C 1.37125 * 119.88086 * 359.47015 * 27 7 6 29 29 H 1.08993 * 109.47342 * 299.99828 * 1 2 3 30 30 H 1.08999 * 109.47170 * 60.00261 * 1 2 3 31 31 H 1.09004 * 109.46875 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46967 * 240.00437 * 2 1 3 33 33 H 1.08995 * 109.46854 * 120.00130 * 2 1 3 34 34 H 1.07996 * 119.94222 * 0.02562 * 5 4 3 35 35 H 1.07994 * 120.05448 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46953 * 299.99503 * 10 8 7 37 37 H 1.09000 * 109.47318 * 59.99101 * 10 8 7 38 38 H 1.09001 * 109.46832 * 299.99686 * 11 10 8 39 39 H 1.09004 * 109.47261 * 59.99705 * 11 10 8 40 40 H 1.09001 * 109.47017 * 209.99969 * 15 14 12 41 41 H 1.08997 * 109.47346 * 329.99656 * 15 14 12 42 42 H 0.97003 * 119.99275 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.46631 * 0.02562 * 24 14 12 44 44 H 1.08994 * 109.47401 * 59.99705 * 25 24 14 45 45 H 1.08999 * 109.46894 * 180.02562 * 25 24 14 46 46 H 1.09003 * 109.46785 * 299.99737 * 25 24 14 47 47 H 1.09000 * 109.47464 * 59.99722 * 26 24 14 48 48 H 1.09002 * 109.46912 * 180.02562 * 26 24 14 49 49 H 1.09004 * 109.46654 * 300.00047 * 26 24 14 50 50 H 1.07994 * 120.06008 * 179.70418 * 27 7 6 51 51 H 1.07994 * 119.94273 * 180.24665 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5251 0.0005 5 6 3.8802 2.8114 0.0011 6 6 5.2389 2.9966 0.0011 7 6 6.0942 1.8877 0.0011 8 6 7.5500 2.0802 0.0017 9 8 8.0136 3.2010 0.0017 10 6 8.4681 0.8850 0.0023 11 6 9.9227 1.3593 0.0022 12 6 10.8407 0.1643 0.0034 13 8 10.3772 -0.9565 0.0037 14 7 12.1769 0.3409 0.0030 15 6 13.0693 -0.8209 0.0036 16 6 13.3751 -1.2203 -1.4170 17 1 12.9470 -0.6645 -2.2382 18 6 14.2012 -2.2952 -1.6683 19 7 14.4676 -2.6440 -2.9081 20 14 14.9420 -3.2559 -0.2480 21 1 14.0284 -4.3639 0.1300 22 1 16.2546 -3.8153 -0.6599 23 1 15.1320 -2.3525 0.9152 24 6 12.7368 1.6947 0.0019 25 6 13.5985 1.8911 1.2508 26 6 13.5979 1.8895 -1.2477 27 6 5.5564 0.5946 -0.0047 28 6 4.1962 0.4204 0.0007 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.2197 3.6658 0.0015 35 1 5.6485 3.9958 0.0012 36 1 8.2816 0.2841 0.8923 37 1 8.2823 0.2836 -0.8876 38 1 10.1089 1.9601 -0.8881 39 1 10.1088 1.9609 0.8919 40 1 13.9965 -0.5665 0.5170 41 1 12.5850 -1.6508 0.5181 42 1 15.0486 -3.4004 -3.0849 43 1 11.9260 2.4231 0.0021 44 1 14.4092 1.1626 1.2512 45 1 14.0147 2.8985 1.2503 46 1 12.9850 1.7523 2.1410 47 1 12.9841 1.7495 -2.1374 48 1 14.0149 2.8966 -1.2482 49 1 14.4087 1.1609 -1.2473 50 1 6.2117 -0.2637 -0.0096 51 1 3.7805 -0.5763 0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069587151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:50 Heat of formation + Delta-G solvation = -94.585125 kcal Electronic energy + Delta-G solvation = -29862.692688 eV Core-core repulsion = 25727.451638 eV Total energy + Delta-G solvation = -4135.241050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.74091 -39.76074 -39.03014 -37.41811 -36.06548 -33.13811 -32.67498 -32.30041 -31.34065 -30.96601 -30.31011 -28.25244 -26.73058 -25.78218 -24.31949 -23.50585 -22.29998 -21.73454 -21.13551 -19.72972 -18.78392 -17.98557 -17.18623 -16.86059 -16.59992 -16.48448 -16.03103 -15.72942 -15.18155 -15.02858 -14.47923 -14.43565 -14.03207 -13.95469 -13.83462 -13.71571 -13.53224 -13.18062 -13.07297 -12.91759 -12.72941 -12.50857 -12.35332 -12.16846 -12.15275 -11.84585 -11.80597 -11.66244 -11.31925 -11.17964 -11.12088 -11.06160 -10.86734 -10.82603 -10.48980 -10.27267 -10.08014 -9.74744 -9.45202 -9.43997 -8.96669 -8.58619 -8.55420 -7.67446 -6.05612 -4.02643 0.48014 1.03519 2.27668 2.69401 3.29842 3.35774 3.37389 3.37933 3.51717 3.68784 4.09856 4.31907 4.41713 4.42484 4.45991 4.57391 4.74392 4.81676 4.91550 5.00355 5.04019 5.13122 5.22862 5.26126 5.27940 5.28540 5.32134 5.42964 5.53467 5.54590 5.65695 5.67867 5.73848 5.83723 5.95154 5.99201 6.01611 6.07686 6.14192 6.15200 6.30101 6.32119 6.35292 6.57176 6.80894 6.94099 6.99285 7.03601 7.41100 7.48070 7.65404 8.31491 8.51238 8.96718 9.02460 9.55281 11.07591 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.002039 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.067061 B =13727.539671 C =14994.784055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.313 6.313 4 C 0.160 3.840 5 C -0.169 4.169 6 C -0.021 4.021 7 C -0.208 4.208 8 C 0.401 3.599 9 O -0.459 6.459 10 C -0.150 4.150 11 C -0.131 4.131 12 C 0.508 3.492 13 O -0.546 6.546 14 N -0.587 5.587 15 C 0.214 3.786 16 C -0.519 4.519 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.873 3.127 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.131 3.869 25 C -0.162 4.162 26 C -0.156 4.156 27 C -0.026 4.026 28 C -0.224 4.224 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.263 0.737 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.080 0.920 50 H 0.141 0.859 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.582 10.222 8.124 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.226 6.226 4 C 0.114 3.886 5 C -0.187 4.187 6 C -0.039 4.039 7 C -0.210 4.210 8 C 0.280 3.720 9 O -0.336 6.336 10 C -0.187 4.187 11 C -0.171 4.171 12 C 0.295 3.705 13 O -0.424 6.424 14 N -0.319 5.319 15 C 0.094 3.906 16 C -0.558 4.558 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.537 5.537 20 Si 0.701 3.299 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.191 1.191 24 C 0.027 3.973 25 C -0.220 4.220 26 C -0.214 4.214 27 C -0.044 4.044 28 C -0.242 4.242 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.099 0.901 50 H 0.159 0.841 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.616 10.207 8.018 26.076 hybrid contribution 0.533 -0.966 0.513 1.216 sum -22.083 9.241 8.530 25.413 Atomic orbital electron populations 1.21787 0.92500 1.03085 1.03598 1.22890 0.96091 0.81542 1.01893 1.86032 1.19045 1.29926 1.87626 1.19369 0.82325 0.94260 0.92657 1.20280 0.95208 0.94888 1.08335 1.21117 0.91785 0.99241 0.91780 1.20455 0.95293 0.94069 1.11133 1.22421 0.88460 0.90386 0.70723 1.90511 1.78866 1.27232 1.36954 1.21771 0.93621 0.97291 1.06035 1.21475 0.93253 0.97595 1.04748 1.20324 0.82955 0.90227 0.77042 1.90651 1.75547 1.25715 1.50512 1.48014 1.05469 1.07231 1.71142 1.19617 0.88717 0.83916 0.98368 1.21343 1.28826 1.14350 0.91287 0.90549 1.24859 0.96200 0.96699 0.95407 1.69902 1.37406 1.27859 1.18554 0.86894 0.78840 0.81069 0.83134 1.20046 1.21203 1.19145 1.21073 0.96505 0.84075 0.95685 1.22165 1.00644 1.01811 0.97406 1.22128 1.01352 1.00937 0.96992 1.21273 0.94688 0.96790 0.91689 1.21139 0.94300 0.98351 1.10428 0.91457 0.91433 0.90152 0.91570 0.91614 0.84659 0.84168 0.87655 0.87409 0.88757 0.89055 0.95172 0.94803 0.92692 0.90096 0.91674 0.91994 0.92901 0.92447 0.93216 0.90142 0.84143 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.16 0.38 -0.27 16 2 C 0.05 0.29 5.45 37.16 0.20 0.50 16 3 O -0.31 -2.74 10.12 -18.69 -0.19 -2.93 16 4 C 0.16 1.51 6.70 -38.96 -0.26 1.25 16 5 C -0.17 -1.57 9.95 -39.68 -0.39 -1.97 16 6 C -0.02 -0.21 9.57 -39.31 -0.38 -0.59 16 7 C -0.21 -2.30 5.87 -105.06 -0.62 -2.92 16 8 C 0.40 5.04 7.11 -30.82 -0.22 4.82 16 9 O -0.46 -6.75 15.97 5.54 0.09 -6.66 16 10 C -0.15 -1.95 3.59 -27.88 -0.10 -2.05 16 11 C -0.13 -1.95 3.30 -27.89 -0.09 -2.05 16 12 C 0.51 10.10 7.67 -10.99 -0.08 10.02 16 13 O -0.55 -12.82 15.56 5.56 0.09 -12.73 16 14 N -0.59 -11.96 2.39 -167.47 -0.40 -12.36 16 15 C 0.21 5.17 3.66 -5.20 -0.02 5.15 16 16 C -0.52 -14.57 8.38 -34.44 -0.29 -14.86 16 17 H 0.08 2.35 7.87 -52.48 -0.41 1.94 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 20 Si 0.87 21.51 27.47 -169.99 -4.67 16.85 16 21 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 24 C 0.13 2.13 3.17 -67.93 -0.22 1.92 16 25 C -0.16 -2.31 9.17 37.16 0.34 -1.97 16 26 C -0.16 -2.67 8.47 37.16 0.31 -2.36 16 27 C -0.03 -0.25 9.44 -39.31 -0.37 -0.62 16 28 C -0.22 -1.97 8.99 -39.67 -0.36 -2.32 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.34 7.65 -51.93 -0.40 -0.06 16 33 H 0.07 0.33 7.65 -51.93 -0.40 -0.07 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.14 1.34 7.64 -52.49 -0.40 0.94 16 36 H 0.11 1.29 8.05 -51.93 -0.42 0.88 16 37 H 0.11 1.42 8.03 -51.93 -0.42 1.01 16 38 H 0.09 1.38 7.75 -51.93 -0.40 0.98 16 39 H 0.09 1.23 7.74 -51.93 -0.40 0.83 16 40 H 0.03 0.70 5.48 -51.93 -0.28 0.42 16 41 H 0.03 0.88 6.85 -51.93 -0.36 0.52 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.08 1.14 5.76 -51.93 -0.30 0.84 16 44 H 0.06 1.02 6.66 -51.93 -0.35 0.68 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 1.60 6.92 -51.93 -0.36 1.25 16 50 H 0.14 1.20 7.04 -52.49 -0.37 0.83 16 51 H 0.13 0.89 6.27 -52.49 -0.33 0.56 16 LS Contribution 413.20 15.07 6.23 6.23 Total: -1.00 -34.62 413.20 -8.47 -43.09 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.14 Total: 1.59 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.25 Total: -6.39 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.37 Total: -39.05 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.01 Total: -22.32 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.62 -8.47 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069587151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.493 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds