Wall clock time and date at job start Tue Mar 31 2020 04:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.46747 * 2 1 4 4 C 1.35662 * 116.99709 * 179.97438 * 3 2 1 5 5 C 1.39076 * 119.88419 * 180.02562 * 4 3 2 6 6 C 1.37123 * 120.11648 * 180.02562 * 5 4 3 7 7 C 1.40038 * 119.88238 * 359.97438 * 6 5 4 8 8 C 1.46851 * 120.11361 * 180.02562 * 7 6 5 9 9 O 1.21295 * 120.00279 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.00136 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47238 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 10 8 13 13 O 1.21279 * 120.00218 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00208 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00107 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47558 * 90.00061 * 15 14 12 17 17 H 1.08003 * 119.99337 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99989 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99456 * 179.97438 * 18 16 15 20 20 Si 1.86791 * 120.00139 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46980 * 90.00027 * 20 18 16 22 22 H 1.48504 * 109.47074 * 209.99821 * 20 18 16 23 23 H 1.48497 * 109.47589 * 330.00025 * 20 18 16 24 24 C 1.46507 * 119.99730 * 0.02562 * 14 12 11 25 25 C 1.52997 * 109.46902 * 120.00224 * 24 14 12 26 26 C 1.53003 * 109.47040 * 240.00314 * 24 14 12 27 27 C 1.40044 * 119.77263 * 0.27186 * 7 6 5 28 28 C 1.37125 * 119.88086 * 359.47015 * 27 7 6 29 29 H 1.08993 * 109.47342 * 299.99828 * 1 2 3 30 30 H 1.08999 * 109.47170 * 60.00261 * 1 2 3 31 31 H 1.09004 * 109.46875 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46967 * 240.00437 * 2 1 3 33 33 H 1.08995 * 109.46854 * 120.00130 * 2 1 3 34 34 H 1.07996 * 119.94222 * 0.02562 * 5 4 3 35 35 H 1.07994 * 120.05448 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46953 * 299.99503 * 10 8 7 37 37 H 1.09000 * 109.47318 * 59.99101 * 10 8 7 38 38 H 1.09001 * 109.46832 * 299.99686 * 11 10 8 39 39 H 1.09004 * 109.47261 * 59.99705 * 11 10 8 40 40 H 1.09001 * 109.47017 * 209.99969 * 15 14 12 41 41 H 1.08997 * 109.47346 * 329.99656 * 15 14 12 42 42 H 0.97003 * 119.99275 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.46631 * 0.02562 * 24 14 12 44 44 H 1.08994 * 109.47401 * 59.99705 * 25 24 14 45 45 H 1.08999 * 109.46894 * 180.02562 * 25 24 14 46 46 H 1.09003 * 109.46785 * 299.99737 * 25 24 14 47 47 H 1.09000 * 109.47464 * 59.99722 * 26 24 14 48 48 H 1.09002 * 109.46912 * 180.02562 * 26 24 14 49 49 H 1.09004 * 109.46654 * 300.00047 * 26 24 14 50 50 H 1.07994 * 120.06008 * 179.70418 * 27 7 6 51 51 H 1.07994 * 119.94273 * 180.24665 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5251 0.0005 5 6 3.8802 2.8114 0.0011 6 6 5.2389 2.9966 0.0011 7 6 6.0942 1.8877 0.0011 8 6 7.5500 2.0802 0.0017 9 8 8.0136 3.2010 0.0017 10 6 8.4681 0.8850 0.0023 11 6 9.9227 1.3593 0.0022 12 6 10.8407 0.1643 0.0034 13 8 10.3772 -0.9565 0.0037 14 7 12.1769 0.3409 0.0030 15 6 13.0693 -0.8209 0.0036 16 6 13.3751 -1.2203 -1.4170 17 1 12.9470 -0.6645 -2.2382 18 6 14.2012 -2.2952 -1.6683 19 7 14.4676 -2.6440 -2.9081 20 14 14.9420 -3.2559 -0.2480 21 1 14.0284 -4.3639 0.1300 22 1 16.2546 -3.8153 -0.6599 23 1 15.1320 -2.3525 0.9152 24 6 12.7368 1.6947 0.0019 25 6 13.5985 1.8911 1.2508 26 6 13.5979 1.8895 -1.2477 27 6 5.5564 0.5946 -0.0047 28 6 4.1962 0.4204 0.0007 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.2197 3.6658 0.0015 35 1 5.6485 3.9958 0.0012 36 1 8.2816 0.2841 0.8923 37 1 8.2823 0.2836 -0.8876 38 1 10.1089 1.9601 -0.8881 39 1 10.1088 1.9609 0.8919 40 1 13.9965 -0.5665 0.5170 41 1 12.5850 -1.6508 0.5181 42 1 15.0486 -3.4004 -3.0849 43 1 11.9260 2.4231 0.0021 44 1 14.4092 1.1626 1.2512 45 1 14.0147 2.8985 1.2503 46 1 12.9850 1.7523 2.1410 47 1 12.9841 1.7495 -2.1374 48 1 14.0149 2.8966 -1.2482 49 1 14.4087 1.1609 -1.2473 50 1 6.2117 -0.2637 -0.0096 51 1 3.7805 -0.5763 0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069587151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:48 Heat of formation + Delta-G solvation = -114.745548 kcal Electronic energy + Delta-G solvation = -29863.566909 eV Core-core repulsion = 25727.451638 eV Total energy + Delta-G solvation = -4136.115271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.53087 -40.97602 -40.21666 -38.17494 -37.62212 -34.92662 -34.04370 -32.98528 -32.56386 -32.05678 -31.13994 -30.00016 -28.00195 -27.01126 -25.01545 -24.49960 -23.80200 -22.75423 -22.32024 -20.68361 -19.56712 -19.32701 -19.04328 -18.46838 -17.43532 -17.13551 -16.96058 -16.94857 -16.82598 -16.10499 -15.87569 -15.54070 -15.32068 -14.93385 -14.77801 -14.63593 -14.52996 -14.42071 -14.25718 -14.14420 -13.76302 -13.62828 -13.59321 -13.33573 -13.22719 -12.97489 -12.88077 -12.81047 -12.63412 -12.62967 -12.33385 -12.29512 -12.15136 -11.91165 -11.77640 -11.70231 -11.68150 -11.51359 -10.78526 -10.75412 -10.60329 -10.17020 -9.38481 -9.31647 -8.28933 -6.31051 -0.33712 0.32160 1.32961 1.36172 1.38842 1.44408 1.80445 2.12717 2.27033 2.33129 2.74833 3.00992 3.05646 3.61807 3.72190 3.81976 3.86856 4.03262 4.04940 4.08171 4.11569 4.19048 4.28236 4.29599 4.37087 4.40693 4.42619 4.53042 4.64151 4.75152 4.84542 4.86196 4.87423 4.91652 4.93835 4.94285 4.97283 5.00523 5.04700 5.09249 5.09722 5.20029 5.27518 5.37109 5.40069 5.49656 5.58092 5.61721 5.72246 6.30203 6.31101 6.51122 6.69338 6.75621 7.26470 7.44226 8.87641 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.002039 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.067061 B =13727.539671 C =14994.784055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.324 6.324 4 C 0.159 3.841 5 C -0.174 4.174 6 C -0.025 4.025 7 C -0.227 4.227 8 C 0.412 3.588 9 O -0.484 6.484 10 C -0.147 4.147 11 C -0.118 4.118 12 C 0.499 3.501 13 O -0.589 6.589 14 N -0.595 5.595 15 C 0.225 3.775 16 C -0.517 4.517 17 H 0.033 0.967 18 C 0.009 3.991 19 N -0.946 5.946 20 Si 0.941 3.059 21 H -0.277 1.277 22 H -0.278 1.278 23 H -0.241 1.241 24 C 0.124 3.876 25 C -0.157 4.157 26 C -0.150 4.150 27 C -0.028 4.028 28 C -0.224 4.224 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.046 0.954 41 H 0.017 0.983 42 H 0.266 0.734 43 H 0.111 0.889 44 H 0.046 0.954 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.032 0.968 48 H 0.088 0.912 49 H 0.045 0.955 50 H 0.149 0.851 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.565 11.120 10.284 28.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.034 4.034 3 O -0.237 6.237 4 C 0.112 3.888 5 C -0.192 4.192 6 C -0.043 4.043 7 C -0.228 4.228 8 C 0.293 3.707 9 O -0.363 6.363 10 C -0.184 4.184 11 C -0.158 4.158 12 C 0.288 3.712 13 O -0.470 6.470 14 N -0.325 5.325 15 C 0.102 3.898 16 C -0.556 4.556 17 H 0.051 0.949 18 C -0.189 4.189 19 N -0.587 5.587 20 Si 0.765 3.235 21 H -0.202 1.202 22 H -0.204 1.204 23 H -0.164 1.164 24 C 0.022 3.978 25 C -0.214 4.214 26 C -0.208 4.208 27 C -0.046 4.046 28 C -0.243 4.243 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.129 0.871 44 H 0.065 0.935 45 H 0.113 0.887 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.106 0.894 49 H 0.064 0.936 50 H 0.167 0.833 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -23.608 11.147 10.189 28.025 hybrid contribution 0.703 -1.220 -0.254 1.430 sum -22.905 9.928 9.935 26.868 Atomic orbital electron populations 1.21817 0.91419 1.04228 1.03293 1.23177 0.97017 0.80387 1.02774 1.86034 1.18557 1.31814 1.87303 1.19538 0.82868 0.94460 0.91960 1.20462 0.95088 0.95642 1.08052 1.21194 0.92147 0.99194 0.91772 1.20383 0.94370 0.95009 1.13022 1.22370 0.89065 0.89545 0.69751 1.90500 1.79316 1.27840 1.38607 1.21747 0.92628 0.97711 1.06330 1.21429 0.93048 0.95391 1.05948 1.21204 0.83182 0.91134 0.75659 1.90620 1.76293 1.27798 1.52318 1.48144 1.05548 1.07886 1.70947 1.19258 0.89896 0.85161 0.95452 1.21510 1.28037 1.13763 0.92290 0.94876 1.25790 0.96900 0.97941 0.98253 1.70056 1.38728 1.28850 1.21054 0.85808 0.77905 0.79561 0.80262 1.20228 1.20375 1.16408 1.21426 0.97668 0.82431 0.96319 1.22129 0.99752 1.03227 0.96323 1.22060 1.00022 1.02138 0.96621 1.21411 0.95321 0.96547 0.91309 1.21369 0.93872 0.99335 1.09692 0.91689 0.91807 0.88286 0.90775 0.90595 0.83268 0.83935 0.86789 0.87885 0.88279 0.86765 0.93579 0.96507 0.92543 0.87134 0.93463 0.88726 0.91838 0.94908 0.89358 0.93581 0.83327 0.82687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 71.98 0.74 -0.27 16 2 C 0.04 0.39 5.45 71.98 0.39 0.79 16 3 O -0.32 -5.15 10.12 -89.78 -0.91 -6.06 16 4 C 0.16 2.74 6.70 22.67 0.15 2.90 16 5 C -0.17 -3.04 9.95 22.21 0.22 -2.82 16 6 C -0.02 -0.49 9.57 22.44 0.21 -0.27 16 7 C -0.23 -4.80 5.87 -20.15 -0.12 -4.92 16 8 C 0.41 9.97 7.11 27.94 0.20 10.17 16 9 O -0.48 -13.71 15.97 -3.08 -0.05 -13.76 16 10 C -0.15 -3.71 3.59 29.85 0.11 -3.60 16 11 C -0.12 -3.40 3.30 29.85 0.10 -3.30 16 12 C 0.50 19.79 7.67 87.66 0.67 20.47 16 13 O -0.59 -28.11 15.56 -3.03 -0.05 -28.15 16 14 N -0.59 -24.04 2.39 -802.14 -1.91 -25.95 16 15 C 0.22 10.88 3.66 85.63 0.31 11.20 16 16 C -0.52 -30.02 8.38 25.60 0.21 -29.81 16 17 H 0.03 2.15 7.87 -2.91 -0.02 2.13 16 18 C 0.01 0.50 5.47 84.65 0.46 0.97 16 19 N -0.95 -59.83 13.96 21.45 0.30 -59.54 16 20 Si 0.94 44.67 27.47 68.60 1.88 46.56 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 24 C 0.12 3.83 3.17 44.99 0.14 3.97 16 25 C -0.16 -3.98 9.17 71.98 0.66 -3.32 16 26 C -0.15 -5.08 8.47 71.98 0.61 -4.47 16 27 C -0.03 -0.50 9.44 22.45 0.21 -0.29 16 28 C -0.22 -3.57 8.99 22.21 0.20 -3.37 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 33 H 0.08 0.58 7.65 -2.39 -0.02 0.56 16 34 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.14 2.63 7.64 -2.91 -0.02 2.61 16 36 H 0.11 2.69 8.05 -2.39 -0.02 2.67 16 37 H 0.10 2.72 8.03 -2.39 -0.02 2.70 16 38 H 0.10 2.78 7.75 -2.39 -0.02 2.77 16 39 H 0.11 2.78 7.74 -2.38 -0.02 2.76 16 40 H 0.05 2.10 5.48 -2.39 -0.01 2.08 16 41 H 0.02 0.88 6.85 -2.39 -0.02 0.86 16 42 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.11 2.79 5.76 -2.39 -0.01 2.77 16 44 H 0.05 1.37 6.66 -2.39 -0.02 1.36 16 45 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 49 H 0.05 1.86 6.92 -2.38 -0.02 1.84 16 50 H 0.15 2.38 7.04 -2.91 -0.02 2.35 16 51 H 0.16 1.71 6.27 -2.91 -0.02 1.70 16 Total: -1.00 -78.07 413.20 5.62 -72.45 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.86 Total: 20.44 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.49 Total: -5.99 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -1.62 Total: -85.49 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -1.00 Total: -47.97 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -78.07 5.62 -72.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069587151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.297 kcal (2) G-P(sol) polarization free energy of solvation -78.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds