Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 109.46935 * 2 1 4 4 N 1.46502 * 109.47343 * 239.99895 * 2 1 3 5 5 C 1.34775 * 119.99975 * 84.99756 * 4 2 1 6 6 O 1.21284 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00034 * 180.02562 * 5 4 2 8 8 N 1.46906 * 109.47021 * 180.02562 * 7 5 4 9 9 C 1.46896 * 110.99605 * 189.99995 * 8 7 5 10 10 C 1.50693 * 109.47454 * 75.57270 * 9 8 7 11 11 H 1.08002 * 120.00000 * 355.20110 * 10 9 8 12 12 C 1.37877 * 120.00362 * 175.19939 * 10 9 8 13 13 N 1.31516 * 119.99655 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00256 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46876 * 60.00096 * 14 12 10 16 16 H 1.48502 * 109.46843 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47021 * 300.00085 * 14 12 10 18 18 C 1.46896 * 111.00195 * 66.04513 * 8 7 5 19 19 H 1.09004 * 109.47363 * 309.70217 * 18 8 7 20 20 C 1.52994 * 109.47299 * 69.70203 * 18 8 7 21 21 C 1.52994 * 109.47159 * 189.70296 * 18 8 7 22 22 C 1.52998 * 117.50096 * 243.34767 * 21 18 8 23 23 C 1.53000 * 60.00179 * 252.50931 * 22 21 18 24 24 C 1.50705 * 109.47383 * 119.99728 * 2 1 3 25 25 C 1.38240 * 119.97394 * 79.72926 * 24 2 1 26 26 C 1.38196 * 120.02775 * 179.72624 * 25 24 2 27 27 C 1.38463 * 119.97099 * 0.52494 * 26 25 24 28 28 F 1.35106 * 120.02744 * 179.72603 * 27 26 25 29 29 C 1.38459 * 119.94848 * 359.75192 * 27 26 25 30 30 C 1.38200 * 119.97433 * 359.97438 * 29 27 26 31 31 H 1.09007 * 109.47342 * 299.99785 * 1 2 3 32 32 H 1.09001 * 109.47599 * 60.00291 * 1 2 3 33 33 H 1.09008 * 109.46811 * 180.02562 * 1 2 3 34 34 H 0.97000 * 120.00238 * 264.99814 * 4 2 1 35 35 H 1.08992 * 109.47259 * 59.99632 * 7 5 4 36 36 H 1.09003 * 109.46957 * 299.99625 * 7 5 4 37 37 H 1.09000 * 109.46882 * 195.57502 * 9 8 7 38 38 H 1.09003 * 109.47371 * 315.56663 * 9 8 7 39 39 H 0.97003 * 120.00048 * 179.97438 * 13 12 10 40 40 H 1.08997 * 109.47159 * 60.00022 * 20 18 8 41 41 H 1.09001 * 109.47613 * 179.97438 * 20 18 8 42 42 H 1.09001 * 109.47268 * 299.99962 * 20 18 8 43 43 H 1.09001 * 115.54992 * 29.05540 * 21 18 8 44 44 H 1.08999 * 117.49682 * 359.97438 * 22 21 18 45 45 H 1.09000 * 117.50394 * 145.01868 * 22 21 18 46 46 H 1.09003 * 117.49631 * 252.50908 * 23 22 21 47 47 H 1.08998 * 117.50489 * 107.48864 * 23 22 21 48 48 H 1.08001 * 119.98692 * 359.97438 * 25 24 2 49 49 H 1.07998 * 120.01564 * 180.29459 * 26 25 24 50 50 H 1.08003 * 120.01377 * 179.97438 * 29 27 26 51 51 H 1.08005 * 119.98899 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8589 1.1586 -2.4115 7 6 2.6488 -0.7289 -3.5877 8 7 2.6989 0.2153 -4.7121 9 6 2.9539 -0.4861 -5.9774 10 6 1.6973 -1.1871 -6.4253 11 1 0.8221 -1.1834 -5.7925 12 6 1.6649 -1.8330 -7.6429 13 7 2.7309 -1.8379 -8.4133 14 14 0.1075 -2.7026 -8.1979 15 1 -1.0038 -1.7212 -8.2827 16 1 0.3311 -3.3146 -9.5323 17 1 -0.2425 -3.7635 -7.2195 18 6 3.7042 1.2604 -4.4776 19 1 3.5533 1.6945 -3.4892 20 6 5.1042 0.6486 -4.5575 21 6 3.5630 2.3515 -5.5408 22 6 4.7420 2.5684 -6.4914 23 6 4.4423 3.5954 -5.3976 24 6 2.0323 -0.7104 1.2305 25 6 2.0613 -2.0920 1.2670 26 6 2.5270 -2.7445 2.3926 27 6 2.9547 -2.0139 3.4884 28 9 3.4051 -2.6507 4.5915 29 6 2.9198 -0.6302 3.4528 30 6 2.4589 0.0201 2.3239 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 1.9760 -1.5507 -3.8325 36 1 3.6480 -1.1213 -3.3986 37 1 3.2587 0.2339 -6.7368 38 1 3.7473 -1.2195 -5.8328 39 1 2.7082 -2.2927 -9.2698 40 1 5.2551 0.2145 -5.5459 41 1 5.8502 1.4241 -4.3840 42 1 5.2048 -0.1288 -3.8001 43 1 2.5595 2.4882 -5.9437 44 1 5.6185 1.9340 -6.3591 45 1 4.5144 2.8477 -7.5201 46 1 4.0175 4.5504 -5.7068 47 1 5.1214 3.6364 -4.5460 48 1 1.7235 -2.6617 0.4139 49 1 2.5540 -3.8238 2.4191 50 1 3.2528 -0.0593 4.3071 51 1 2.4320 1.0995 2.2958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069595361.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = -22.329771 kcal Electronic energy + Delta-G solvation = -30861.282985 eV Core-core repulsion = 26676.122040 eV Total energy + Delta-G solvation = -4185.160944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.20788 -40.24148 -39.23484 -38.03987 -35.60036 -34.93054 -32.53287 -31.83966 -31.41196 -29.47827 -29.09212 -27.71934 -25.76648 -24.09471 -23.65994 -23.42929 -21.91308 -21.58157 -20.79736 -20.04887 -18.35823 -18.02255 -16.98221 -16.85187 -16.48644 -15.98109 -15.89218 -15.75708 -15.23445 -14.88059 -14.56465 -14.39028 -14.21278 -13.97907 -13.90272 -13.74322 -13.39630 -13.34909 -13.02842 -12.75996 -12.50593 -12.38175 -12.11982 -11.89191 -11.62806 -11.59744 -11.43490 -11.24661 -11.13166 -11.04485 -10.78308 -10.74471 -10.55361 -10.30191 -9.95732 -9.73755 -9.53237 -9.48501 -9.22567 -9.16399 -8.86865 -8.85332 -8.39428 -7.19123 -6.00655 -4.01852 0.73417 0.84768 3.02558 3.10857 3.33032 3.37344 3.37990 3.41301 3.90053 4.28075 4.34145 4.35132 4.44498 4.52185 4.86022 4.86881 4.94494 5.07268 5.17913 5.27004 5.34386 5.36096 5.47352 5.49928 5.51716 5.62545 5.65138 5.73111 5.74339 5.77593 5.85521 5.85944 5.94689 5.96030 6.05915 6.08320 6.15365 6.17284 6.30108 6.38774 6.49781 6.52103 6.58874 6.59940 6.80817 6.90304 7.28239 7.38563 7.63065 7.83477 8.14049 8.21925 8.54448 8.61698 9.05593 9.62045 11.09375 Molecular weight = 348.20amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.002674 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.588366 B =10466.835069 C =12043.880757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.186 3.814 3 H 0.097 0.903 4 N -0.737 5.737 5 C 0.517 3.483 6 O -0.519 6.519 7 C 0.043 3.957 8 N -0.509 5.509 9 C 0.194 3.806 10 C -0.507 4.507 11 H 0.060 0.940 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.108 3.892 19 H 0.087 0.913 20 C -0.188 4.188 21 C -0.117 4.117 22 C -0.185 4.185 23 C -0.188 4.188 24 C -0.096 4.096 25 C -0.084 4.084 26 C -0.149 4.149 27 C 0.094 3.906 28 F -0.141 7.141 29 C -0.150 4.150 30 C -0.079 4.079 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.397 0.603 35 H 0.110 0.890 36 H 0.052 0.948 37 H 0.046 0.954 38 H -0.010 1.010 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 1.884 21.013 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.081 3.919 3 H 0.114 0.886 4 N -0.393 5.393 5 C 0.304 3.696 6 O -0.393 6.393 7 C -0.089 4.089 8 N -0.233 5.233 9 C 0.069 3.931 10 C -0.546 4.546 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.537 5.537 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.001 4.001 19 H 0.105 0.895 20 C -0.247 4.247 21 C -0.135 4.135 22 C -0.222 4.222 23 C -0.226 4.226 24 C -0.097 4.097 25 C -0.103 4.103 26 C -0.167 4.167 27 C 0.075 3.925 28 F -0.120 7.120 29 C -0.169 4.169 30 C -0.098 4.098 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.232 0.768 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.007 0.993 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.128 0.872 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.152 0.848 49 H 0.155 0.845 50 H 0.154 0.846 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.293 2.895 20.755 20.996 hybrid contribution 0.201 -1.626 -0.103 1.642 sum 1.494 1.269 20.652 20.745 Atomic orbital electron populations 1.22179 0.94114 1.02507 1.02898 1.19678 0.94258 0.96722 0.81265 0.88551 1.46252 1.69495 1.14066 1.09453 1.21142 0.76868 0.87600 0.84016 1.90642 1.48318 1.15954 1.84376 1.21911 1.00655 0.96593 0.89712 1.62021 1.46714 1.12341 1.02181 1.19788 0.95816 0.92781 0.84717 1.21163 0.98480 1.32003 1.02948 0.92148 1.24953 0.96241 0.96691 0.96544 1.69944 1.28397 1.43902 1.11482 0.86620 0.83702 0.79763 0.77651 1.20210 1.21450 1.20385 1.21265 0.88537 0.91982 0.98293 0.89506 1.22626 0.99051 1.00571 1.02426 1.22157 0.96196 0.95719 0.99430 1.23086 1.01020 1.02690 0.95425 1.22908 1.04395 0.94082 1.01190 1.20105 0.99668 0.93905 0.96032 1.20855 0.97950 0.93803 0.97658 1.21151 1.01731 1.00931 0.92935 1.17761 0.99982 0.90790 0.83992 1.91506 1.86839 1.82272 1.51379 1.21144 1.03050 0.92558 1.00170 1.20903 0.96638 1.00462 0.91789 0.91796 0.91048 0.92291 0.76836 0.87233 0.93064 0.93632 0.99266 0.92950 0.91244 0.93178 0.93613 0.87165 0.88695 0.89426 0.89541 0.89676 0.84796 0.84529 0.84599 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.46 37.15 0.35 -1.25 16 2 C 0.19 1.92 2.77 -69.08 -0.19 1.73 16 3 H 0.10 1.12 7.44 -51.93 -0.39 0.73 16 4 N -0.74 -8.62 5.03 -54.93 -0.28 -8.90 16 5 C 0.52 8.26 7.43 -10.99 -0.08 8.18 16 6 O -0.52 -9.92 14.05 5.55 0.08 -9.84 16 7 C 0.04 0.76 5.15 -4.97 -0.03 0.73 16 8 N -0.51 -10.72 4.11 -229.53 -0.94 -11.67 16 9 C 0.19 4.79 3.36 -4.98 -0.02 4.78 16 10 C -0.51 -13.79 8.61 -34.44 -0.30 -14.09 16 11 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 14 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.11 2.02 2.32 -67.72 -0.16 1.87 16 19 H 0.09 1.67 5.79 -51.93 -0.30 1.37 16 20 C -0.19 -3.20 7.10 37.15 0.26 -2.93 16 21 C -0.12 -2.16 4.65 -90.62 -0.42 -2.58 16 22 C -0.19 -3.10 9.26 -26.73 -0.25 -3.35 16 23 C -0.19 -2.87 9.96 -26.73 -0.27 -3.13 16 24 C -0.10 -0.84 4.95 -104.62 -0.52 -1.36 16 25 C -0.08 -0.67 9.05 -39.60 -0.36 -1.03 16 26 C -0.15 -1.20 10.03 -39.51 -0.40 -1.60 16 27 C 0.09 0.84 7.30 -39.42 -0.29 0.55 16 28 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 29 C -0.15 -1.19 10.03 -39.51 -0.40 -1.59 16 30 C -0.08 -0.63 9.67 -39.59 -0.38 -1.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.40 3.74 6.88 -40.82 -0.28 3.46 16 35 H 0.11 2.00 7.31 -51.93 -0.38 1.62 16 36 H 0.05 0.84 6.38 -51.93 -0.33 0.51 16 37 H 0.05 1.22 6.63 -51.93 -0.34 0.88 16 38 H -0.01 -0.27 7.31 -51.93 -0.38 -0.65 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.07 1.31 5.87 -51.93 -0.31 1.01 16 41 H 0.05 0.75 7.18 -51.93 -0.37 0.38 16 42 H 0.04 0.73 6.56 -51.93 -0.34 0.39 16 43 H 0.11 2.28 8.14 -51.93 -0.42 1.86 16 44 H 0.09 1.56 5.82 -51.93 -0.30 1.26 16 45 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 48 H 0.13 0.87 6.93 -52.49 -0.36 0.51 16 49 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 50 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 51 H 0.14 0.85 8.04 -52.48 -0.42 0.43 16 LS Contribution 408.17 15.07 6.15 6.15 Total: -1.00 -31.21 408.17 -10.60 -41.81 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.84 Total: 7.39 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -3.53 Total: -14.60 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.48 Total: -45.83 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.21 -10.60 -41.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069595361.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.482 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds