Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47265 * 2 1 4 4 N 1.46498 * 109.47123 * 119.99658 * 2 1 3 5 5 C 1.34772 * 120.00350 * 275.00233 * 4 2 1 6 6 O 1.21286 * 119.99789 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00412 * 179.97438 * 5 4 2 8 8 N 1.46904 * 109.47348 * 179.97438 * 7 5 4 9 9 C 1.46898 * 111.00194 * 190.00166 * 8 7 5 10 10 C 1.50696 * 109.47302 * 75.57182 * 9 8 7 11 11 H 1.08000 * 119.99771 * 355.55439 * 10 9 8 12 12 C 1.37872 * 120.00055 * 175.54495 * 10 9 8 13 13 N 1.31514 * 119.99974 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99945 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47347 * 89.99672 * 14 12 10 16 16 H 1.48504 * 109.47005 * 209.99507 * 14 12 10 17 17 H 1.48501 * 109.47198 * 329.99260 * 14 12 10 18 18 C 1.46903 * 110.99574 * 66.04635 * 8 7 5 19 19 H 1.08996 * 109.47182 * 309.73179 * 18 8 7 20 20 C 1.53002 * 109.46895 * 69.73479 * 18 8 7 21 21 C 1.53000 * 109.46839 * 189.73088 * 18 8 7 22 22 C 1.53004 * 117.49949 * 243.34970 * 21 18 8 23 23 C 1.52998 * 60.00014 * 252.51263 * 22 21 18 24 24 C 1.50701 * 109.47427 * 239.99801 * 2 1 3 25 25 C 1.38249 * 119.97270 * 279.72905 * 24 2 1 26 26 C 1.38195 * 120.02161 * 179.72584 * 25 24 2 27 27 C 1.38462 * 119.97616 * 0.51982 * 26 25 24 28 28 F 1.35106 * 120.02621 * 179.72775 * 27 26 25 29 29 C 1.38461 * 119.94641 * 359.75132 * 27 26 25 30 30 C 1.38198 * 119.97471 * 0.02562 * 29 27 26 31 31 H 1.09001 * 109.46755 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47392 * 299.99869 * 1 2 3 33 33 H 1.08996 * 109.46803 * 60.00736 * 1 2 3 34 34 H 0.97001 * 120.00235 * 95.00109 * 4 2 1 35 35 H 1.09002 * 109.47006 * 60.00067 * 7 5 4 36 36 H 1.08998 * 109.47239 * 300.00152 * 7 5 4 37 37 H 1.09002 * 109.47326 * 195.57937 * 9 8 7 38 38 H 1.09007 * 109.46764 * 315.57752 * 9 8 7 39 39 H 0.97003 * 119.99987 * 180.02562 * 13 12 10 40 40 H 1.08996 * 109.47451 * 59.99864 * 20 18 8 41 41 H 1.09003 * 109.46761 * 179.97438 * 20 18 8 42 42 H 1.08996 * 109.47254 * 299.99773 * 20 18 8 43 43 H 1.09004 * 115.55080 * 29.06426 * 21 18 8 44 44 H 1.08998 * 117.49920 * 0.02562 * 22 21 18 45 45 H 1.08997 * 117.49416 * 145.02386 * 22 21 18 46 46 H 1.08997 * 117.49972 * 252.51012 * 23 22 21 47 47 H 1.09007 * 117.49791 * 107.48676 * 23 22 21 48 48 H 1.07994 * 119.98776 * 359.97235 * 25 24 2 49 49 H 1.08005 * 120.01142 * 180.25316 * 26 25 24 50 50 H 1.07996 * 120.01104 * 179.97438 * 29 27 26 51 51 H 1.07996 * 119.98385 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 7 2.6989 0.2155 4.7121 9 6 3.4013 -0.3711 5.8613 10 6 4.8850 -0.3695 5.5974 11 1 5.2630 -0.0394 4.6411 12 6 5.7598 -0.7894 6.5768 13 7 7.0546 -0.7876 6.3466 14 14 5.1059 -1.3608 8.2307 15 1 4.8479 -2.8225 8.1828 16 1 6.1084 -1.0695 9.2868 17 1 3.8416 -0.6448 8.5373 18 6 1.3495 0.6570 5.0892 19 1 0.8152 0.9923 4.2003 20 6 0.5924 -0.5079 5.7303 21 6 1.4512 1.8109 6.0888 22 6 0.8872 1.5814 7.4924 23 6 0.1501 2.4957 6.5119 24 6 2.0324 -0.7104 -1.2304 25 6 2.0719 -2.0920 -1.2625 26 6 2.5271 -2.7446 -2.3924 27 6 2.9539 -2.0142 -3.4886 28 9 3.4043 -2.6511 -4.5917 29 6 2.9191 -0.6305 -3.4531 30 6 2.4592 0.0199 -2.3238 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 2.2491 -1.6317 1.1527 35 1 3.6480 -1.1212 3.3987 36 1 1.9760 -1.5505 3.8326 37 1 3.1905 0.2168 6.7547 38 1 3.0601 -1.3954 6.0114 39 1 7.6701 -1.0834 7.0356 40 1 1.1266 -0.8432 6.6192 41 1 -0.4087 -0.1801 6.0105 42 1 0.5200 -1.3299 5.0183 43 1 2.3415 2.4334 5.9992 44 1 0.4441 0.6083 7.7040 45 1 1.4067 2.0528 8.3267 46 1 0.1845 3.5686 6.7011 47 1 -0.7784 2.1241 6.0781 48 1 1.7431 -2.6614 -0.4058 49 1 2.5540 -3.8240 -2.4189 50 1 3.2521 -0.0597 -4.3073 51 1 2.4316 1.0992 -2.2961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069595364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = -17.620171 kcal Electronic energy + Delta-G solvation = -30915.281851 eV Core-core repulsion = 26730.325131 eV Total energy + Delta-G solvation = -4184.956721 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.16279 -40.25380 -39.28803 -38.14904 -35.67451 -35.02321 -32.48349 -31.84463 -31.38818 -29.63073 -29.21301 -28.20295 -25.97790 -24.14072 -23.62408 -23.34948 -22.02189 -21.46342 -20.75568 -20.07494 -18.43002 -18.01426 -17.08192 -16.90433 -16.79617 -16.03756 -15.87717 -15.80674 -15.27473 -14.81813 -14.72280 -14.47294 -14.19575 -13.90323 -13.83141 -13.71065 -13.50386 -13.32618 -13.28925 -12.88516 -12.59863 -12.44115 -12.32283 -11.96760 -11.86116 -11.72971 -11.50177 -11.42171 -11.22277 -11.14022 -10.91568 -10.70662 -10.55305 -10.38719 -9.94567 -9.76090 -9.63608 -9.45155 -9.26465 -9.10556 -9.05091 -8.82479 -8.56341 -7.34010 -6.04158 -4.00963 0.77399 0.89083 2.98810 3.13055 3.27158 3.35158 3.37483 3.38300 3.94255 4.21199 4.29133 4.37802 4.42337 4.56012 4.67913 4.89334 4.97322 5.03274 5.16086 5.16828 5.25388 5.28579 5.32405 5.47554 5.48738 5.52960 5.58789 5.65844 5.70826 5.74829 5.77483 5.78935 5.80890 5.88373 5.93588 6.01023 6.11306 6.13496 6.16127 6.23845 6.35210 6.43816 6.53757 6.55030 6.63320 6.75289 6.88307 6.97563 7.56545 7.66391 7.92566 8.02548 8.54679 8.67933 9.05599 9.57874 11.09075 Molecular weight = 348.20amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.002703 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.127462 B =10357.265228 C =12151.324675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.185 3.815 3 H 0.098 0.902 4 N -0.736 5.736 5 C 0.518 3.482 6 O -0.519 6.519 7 C 0.041 3.959 8 N -0.499 5.499 9 C 0.162 3.838 10 C -0.507 4.507 11 H 0.079 0.921 12 C 0.069 3.931 13 N -0.901 5.901 14 Si 0.870 3.130 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.264 1.264 18 C 0.105 3.895 19 H 0.093 0.907 20 C -0.189 4.189 21 C -0.120 4.120 22 C -0.192 4.192 23 C -0.183 4.183 24 C -0.097 4.097 25 C -0.084 4.084 26 C -0.149 4.149 27 C 0.095 3.905 28 F -0.141 7.141 29 C -0.150 4.150 30 C -0.078 4.078 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.115 0.885 36 H 0.053 0.947 37 H 0.041 0.959 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.133 0.867 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.074 -2.156 -14.959 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.080 3.920 3 H 0.116 0.884 4 N -0.391 5.391 5 C 0.305 3.695 6 O -0.393 6.393 7 C -0.090 4.090 8 N -0.222 5.222 9 C 0.036 3.964 10 C -0.546 4.546 11 H 0.097 0.903 12 C -0.132 4.132 13 N -0.540 5.540 14 Si 0.697 3.303 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.188 1.188 18 C -0.004 4.004 19 H 0.110 0.890 20 C -0.248 4.248 21 C -0.138 4.138 22 C -0.229 4.229 23 C -0.221 4.221 24 C -0.098 4.098 25 C -0.103 4.103 26 C -0.168 4.168 27 C 0.076 3.924 28 F -0.120 7.120 29 C -0.169 4.169 30 C -0.097 4.097 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.133 0.867 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.002 0.998 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.131 0.869 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.151 0.849 49 H 0.155 0.845 50 H 0.154 0.846 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.806 -0.924 -14.992 21.091 hybrid contribution -0.327 -1.765 0.962 2.037 sum -15.133 -2.689 -14.030 20.811 Atomic orbital electron populations 1.22165 0.94287 1.02295 1.02776 1.19687 0.94008 0.96982 0.81302 0.88365 1.46222 1.69388 1.14046 1.09483 1.21030 0.76524 0.87605 0.84327 1.90645 1.48345 1.15709 1.84585 1.21937 1.03019 0.94008 0.90021 1.61837 1.14517 1.38565 1.07241 1.20255 0.94809 0.92255 0.89103 1.21073 0.88443 1.42813 1.02224 0.90277 1.24876 0.94714 0.95463 0.98159 1.69896 1.01625 1.48159 1.34293 0.86941 0.79312 0.79303 0.84734 1.20448 1.21252 1.18830 1.21338 0.89834 0.92290 0.96906 0.88959 1.22642 1.00632 0.99854 1.01672 1.22218 0.97107 0.99956 0.94564 1.23123 1.04775 1.01024 0.93969 1.22895 0.96363 0.98119 1.04721 1.20074 0.99846 0.93888 0.95976 1.20814 0.98160 0.93761 0.97517 1.21138 1.01848 1.00903 0.92878 1.17758 0.99873 0.90793 0.84006 1.91506 1.86815 1.82261 1.51393 1.21150 1.02948 0.92561 1.00199 1.20906 0.96466 1.00502 0.91781 0.92406 0.91392 0.91669 0.76789 0.86731 0.92982 0.94146 0.99768 0.92739 0.91809 0.92854 0.93285 0.86856 0.88771 0.89430 0.89343 0.89526 0.84944 0.84548 0.84555 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.46 37.16 0.35 -1.08 16 2 C 0.19 1.91 2.78 -69.08 -0.19 1.72 16 3 H 0.10 1.18 7.44 -51.93 -0.39 0.79 16 4 N -0.74 -8.57 5.03 -54.93 -0.28 -8.85 16 5 C 0.52 8.19 7.43 -10.99 -0.08 8.11 16 6 O -0.52 -9.80 14.05 5.55 0.08 -9.73 16 7 C 0.04 0.72 5.15 -4.97 -0.03 0.69 16 8 N -0.50 -10.17 4.11 -229.51 -0.94 -11.11 16 9 C 0.16 3.74 2.44 -4.98 -0.01 3.73 16 10 C -0.51 -14.01 9.16 -34.44 -0.32 -14.32 16 11 H 0.08 2.41 7.90 -52.49 -0.41 1.99 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 14 Si 0.87 21.07 27.56 -169.99 -4.68 16.38 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.26 -6.13 6.42 56.52 0.36 -5.76 16 18 C 0.11 1.85 2.32 -67.71 -0.16 1.70 16 19 H 0.09 1.67 5.78 -51.93 -0.30 1.37 16 20 C -0.19 -2.93 7.10 37.16 0.26 -2.66 16 21 C -0.12 -2.09 4.65 -90.62 -0.42 -2.51 16 22 C -0.19 -2.97 9.26 -26.73 -0.25 -3.22 16 23 C -0.18 -2.60 9.96 -26.73 -0.27 -2.87 16 24 C -0.10 -0.88 4.96 -104.62 -0.52 -1.40 16 25 C -0.08 -0.69 9.06 -39.59 -0.36 -1.05 16 26 C -0.15 -1.26 10.03 -39.51 -0.40 -1.65 16 27 C 0.09 0.90 7.30 -39.42 -0.29 0.61 16 28 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 29 C -0.15 -1.28 10.03 -39.51 -0.40 -1.67 16 30 C -0.08 -0.66 9.67 -39.60 -0.38 -1.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.40 3.73 6.85 -40.82 -0.28 3.45 16 35 H 0.11 2.13 7.31 -51.93 -0.38 1.75 16 36 H 0.05 0.79 6.39 -51.93 -0.33 0.46 16 37 H 0.04 0.97 5.37 -51.93 -0.28 0.69 16 38 H -0.02 -0.35 6.96 -51.93 -0.36 -0.71 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.06 1.07 5.87 -51.93 -0.30 0.77 16 41 H 0.05 0.72 7.19 -51.93 -0.37 0.35 16 42 H 0.05 0.70 6.57 -51.93 -0.34 0.36 16 43 H 0.11 2.23 8.14 -51.93 -0.42 1.80 16 44 H 0.09 1.40 5.82 -51.93 -0.30 1.10 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.09 1.13 7.95 -51.92 -0.41 0.72 16 48 H 0.13 0.85 6.90 -52.49 -0.36 0.49 16 49 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 50 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 51 H 0.14 0.94 8.04 -52.49 -0.42 0.52 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -32.28 404.43 -10.27 -42.54 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.81 Total: 7.59 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -3.54 Total: -15.05 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.45 Total: -46.41 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.68 Total: 16.38 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.28 -10.27 -42.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069595364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.924 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds