Wall clock time and date at job start Tue Mar 31 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47392 * 2 1 4 4 C 1.53003 * 109.47147 * 119.99887 * 2 1 3 5 5 C 1.53006 * 117.49411 * 3.36920 * 4 2 1 6 6 C 1.52993 * 59.99841 * 252.50720 * 5 4 2 7 7 N 1.46900 * 109.47441 * 239.99900 * 2 1 3 8 8 C 1.46909 * 110.99914 * 306.08512 * 7 2 1 9 9 C 1.50697 * 109.47055 * 199.55701 * 8 7 2 10 10 H 1.07999 * 119.99957 * 355.44124 * 9 8 7 11 11 C 1.37877 * 119.99673 * 175.44194 * 9 8 7 12 12 N 1.31515 * 119.99549 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00401 * 0.02562 * 11 9 8 14 14 H 1.48492 * 109.47243 * 89.99397 * 13 11 9 15 15 H 1.48497 * 109.47248 * 209.99939 * 13 11 9 16 16 H 1.48504 * 109.47022 * 329.99769 * 13 11 9 17 17 C 1.46898 * 110.99693 * 70.03198 * 7 2 1 18 18 N 1.46495 * 109.47134 * 81.05291 * 17 7 2 19 19 N 1.40283 * 126.56406 * 75.01751 * 18 17 7 20 20 C 1.30423 * 107.71775 * 179.74022 * 19 18 17 21 21 C 1.47185 * 125.49354 * 179.97438 * 20 19 18 22 22 C 1.35075 * 125.28690 * 179.97438 * 21 20 19 23 23 C 1.37809 * 114.67878 * 179.97438 * 22 21 20 24 24 C 1.33713 * 115.09023 * 359.97438 * 23 22 21 25 25 S 1.75854 * 109.78440 * 359.76159 * 24 23 22 26 26 O 1.35139 * 109.01814 * 359.97438 * 20 19 18 27 27 C 1.34341 * 108.86788 * 0.02562 * 26 20 19 28 28 O 1.21703 * 126.24036 * 180.02562 * 27 26 20 29 29 H 1.08993 * 109.47438 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47260 * 300.00633 * 1 2 3 31 31 H 1.09008 * 109.47114 * 59.99972 * 1 2 3 32 32 H 1.08995 * 115.54951 * 149.07464 * 4 2 1 33 33 H 1.09002 * 117.50103 * 0.02562 * 5 4 2 34 34 H 1.09003 * 117.49407 * 145.01837 * 5 4 2 35 35 H 1.08998 * 117.50359 * 252.50734 * 6 5 4 36 36 H 1.09004 * 117.51337 * 107.48231 * 6 5 4 37 37 H 1.09004 * 109.46691 * 319.55936 * 8 7 2 38 38 H 1.08997 * 109.47169 * 79.55499 * 8 7 2 39 39 H 0.97009 * 119.99922 * 179.97438 * 12 11 9 40 40 H 1.08998 * 109.47668 * 321.04991 * 17 7 2 41 41 H 1.09008 * 109.46886 * 201.04756 * 17 7 2 42 42 H 1.07995 * 122.65916 * 359.97438 * 22 21 20 43 43 H 1.07991 * 122.45346 * 179.97438 * 23 22 21 44 44 H 1.08003 * 125.10701 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 0.9980 -1.3491 2.1773 6 6 1.7398 -0.0817 2.6063 7 7 2.0197 -0.6925 -1.1994 8 6 1.4336 -2.0352 -1.3082 9 6 2.2787 -2.8792 -2.2272 10 1 3.1202 -2.4399 -2.7423 11 6 1.9775 -4.2121 -2.4104 12 7 2.7148 -4.9485 -3.2128 13 14 0.5216 -4.9717 -1.5202 14 1 -0.6964 -4.8371 -2.3587 15 1 0.7918 -6.4097 -1.2667 16 1 0.3122 -4.2720 -0.2271 17 6 1.7537 0.0976 -2.4089 18 7 2.7825 1.1303 -2.5537 19 7 4.1065 0.9376 -2.9756 20 6 4.6962 2.1008 -2.9761 21 6 6.0969 2.3487 -3.3542 22 6 6.7035 3.5556 -3.3536 23 6 8.0240 3.5361 -3.7472 24 6 8.5023 2.3294 -4.0681 25 16 7.2434 1.1178 -3.8685 26 8 3.8140 3.0420 -2.5736 27 6 2.6364 2.4504 -2.3126 28 8 1.6225 3.0038 -1.9295 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 2.9920 -1.2399 1.1369 33 1 -0.0507 -1.2487 1.8976 34 1 1.2645 -2.2812 2.6756 35 1 2.4942 -0.1798 3.3869 36 1 1.1793 0.8533 2.6091 37 1 1.3975 -2.4969 -0.3215 38 1 0.4236 -1.9592 -1.7110 39 1 2.5031 -5.8864 -3.3415 40 1 0.7745 0.5693 -2.3267 41 1 1.7700 -0.5563 -3.2809 42 1 6.1939 4.4637 -3.0674 43 1 8.6283 4.4300 -3.7931 44 1 9.5112 2.1284 -4.3969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069702096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:20 Heat of formation + Delta-G solvation = 83.991367 kcal Electronic energy + Delta-G solvation = -28792.102853 eV Core-core repulsion = 24840.673416 eV Total energy + Delta-G solvation = -3951.429438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.17447 -39.04277 -38.18745 -37.58500 -36.38308 -35.03862 -32.63174 -32.16194 -29.89111 -29.46906 -27.48838 -25.94847 -24.81275 -23.85116 -22.87665 -22.31283 -21.93931 -21.10192 -19.58057 -18.52921 -18.36010 -17.58336 -17.23706 -16.89878 -16.26728 -16.00406 -15.59847 -15.54265 -15.12175 -14.34983 -14.18529 -13.91449 -13.81853 -13.69305 -13.14760 -12.97852 -12.81813 -12.57046 -12.52337 -12.27766 -12.10103 -11.82497 -11.73732 -11.61244 -11.35724 -11.07227 -10.98610 -10.81137 -10.72322 -10.62036 -10.53012 -10.07392 -9.89326 -9.67231 -9.54851 -9.32176 -8.73603 -8.62334 -8.39341 -7.68968 -6.08705 -4.06881 0.22147 1.04295 1.70876 1.82594 1.93229 2.34096 2.63033 2.68816 3.24055 3.32705 3.33666 4.01308 4.14972 4.37440 4.48805 4.74415 4.83689 5.00802 5.10582 5.17174 5.21466 5.24382 5.33312 5.34493 5.44951 5.52380 5.55577 5.63557 5.73378 5.82499 5.89026 5.94637 6.02049 6.07209 6.08267 6.11339 6.23624 6.33008 6.43416 6.55934 6.73483 6.77407 7.43785 7.51511 7.62847 7.76673 7.82573 8.57402 9.03286 9.51929 11.04092 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.009948 B = 0.003664 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.921748 B = 7640.675779 C = 9208.933212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.108 3.892 3 H 0.070 0.930 4 C -0.129 4.129 5 C -0.185 4.185 6 C -0.183 4.183 7 N -0.527 5.527 8 C 0.168 3.832 9 C -0.513 4.513 10 H 0.085 0.915 11 C 0.073 3.927 12 N -0.896 5.896 13 Si 0.868 3.132 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.264 1.264 17 C 0.315 3.685 18 N -0.427 5.427 19 N -0.214 5.214 20 C 0.285 3.715 21 C -0.145 4.145 22 C -0.085 4.085 23 C -0.142 4.142 24 C -0.211 4.211 25 S 0.228 5.772 26 O -0.270 6.270 27 C 0.603 3.397 28 O -0.493 6.493 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.045 0.955 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.378 15.059 1.639 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.001 4.001 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.222 4.222 6 C -0.221 4.221 7 N -0.251 5.251 8 C 0.043 3.957 9 C -0.551 4.551 10 H 0.103 0.897 11 C -0.129 4.129 12 N -0.534 5.534 13 Si 0.695 3.305 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.189 1.189 17 C 0.106 3.894 18 N -0.259 5.259 19 N -0.043 5.043 20 C 0.061 3.939 21 C -0.265 4.265 22 C -0.121 4.121 23 C -0.173 4.173 24 C -0.349 4.349 25 S 0.494 5.506 26 O -0.167 6.167 27 C 0.354 3.646 28 O -0.375 6.375 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 7.217 12.732 1.509 14.712 hybrid contribution -1.658 1.760 0.825 2.555 sum 5.559 14.492 2.334 15.696 Atomic orbital electron populations 1.22587 0.97818 1.02487 1.01658 1.21212 0.92181 0.96793 0.89896 0.91145 1.22236 1.00628 1.02527 0.89362 1.23117 0.98232 0.96642 1.04190 1.22933 1.03736 0.97057 0.98361 1.61719 1.59711 1.03962 0.99727 1.20217 0.93131 0.83747 0.98629 1.21070 1.14526 0.93878 1.25657 0.89728 1.24851 0.96144 0.96966 0.94947 1.69892 1.39051 1.07415 1.37077 0.86978 0.83521 0.79005 0.81005 1.20324 1.21157 1.18890 1.22177 0.83656 0.86548 0.97000 1.50585 1.08427 1.07225 1.59660 1.77856 0.92161 1.17864 1.16400 1.22380 0.90773 0.82246 0.98538 1.21227 0.91221 0.99297 1.14743 1.20429 0.94662 0.97207 0.99776 1.19990 0.95093 0.98648 1.03530 1.26196 1.04191 0.96931 1.07586 1.84941 0.98320 1.06353 1.61011 1.85109 1.21451 1.37312 1.72800 1.19407 0.82558 0.82356 0.80264 1.91178 1.24996 1.69707 1.51656 0.91393 0.92364 0.92674 0.86747 0.88504 0.89181 0.89166 0.89312 0.93697 0.99230 0.92651 0.90103 0.85904 0.83247 0.83493 0.80969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 7.12 37.16 0.26 -2.68 16 2 C 0.11 1.89 2.65 -67.71 -0.18 1.71 16 3 H 0.07 1.29 7.61 -51.93 -0.40 0.89 16 4 C -0.13 -2.15 4.67 -90.62 -0.42 -2.57 16 5 C -0.18 -2.74 9.26 -26.73 -0.25 -2.99 16 6 C -0.18 -2.51 9.95 -26.74 -0.27 -2.77 16 7 N -0.53 -10.57 4.47 -231.96 -1.04 -11.61 16 8 C 0.17 3.77 2.38 -4.97 -0.01 3.76 16 9 C -0.51 -13.80 9.06 -34.44 -0.31 -14.11 16 10 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 11 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 13 Si 0.87 20.58 27.56 -169.99 -4.69 15.89 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.26 -5.97 6.41 56.52 0.36 -5.61 16 17 C 0.31 5.92 5.94 -63.32 -0.38 5.55 16 18 N -0.43 -7.87 3.76 -68.30 -0.26 -8.13 16 19 N -0.21 -3.88 12.59 31.84 0.40 -3.47 16 20 C 0.29 4.45 8.11 -14.52 -0.12 4.33 16 21 C -0.15 -1.81 6.43 -37.08 -0.24 -2.04 16 22 C -0.08 -0.82 10.08 -40.86 -0.41 -1.24 16 23 C -0.14 -1.09 10.16 -41.33 -0.42 -1.51 16 24 C -0.21 -1.62 11.23 29.15 0.33 -1.29 16 25 S 0.23 2.50 23.30 -107.50 -2.50 -0.01 16 26 O -0.27 -4.40 10.70 -20.95 -0.22 -4.63 16 27 C 0.60 10.95 8.86 54.15 0.48 11.43 16 28 O -0.49 -9.69 17.75 -19.01 -0.34 -10.02 16 29 H 0.07 1.12 5.86 -51.93 -0.30 0.81 16 30 H 0.06 0.82 7.19 -51.93 -0.37 0.44 16 31 H 0.05 0.86 6.43 -51.92 -0.33 0.52 16 32 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 33 H 0.10 1.39 5.82 -51.93 -0.30 1.09 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.15 7.95 -51.93 -0.41 0.74 16 37 H 0.05 1.03 5.37 -51.93 -0.28 0.75 16 38 H -0.01 -0.22 6.97 -51.93 -0.36 -0.58 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.08 1.41 5.85 -51.93 -0.30 1.10 16 41 H 0.12 2.46 7.24 -51.92 -0.38 2.08 16 42 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -31.11 377.33 -9.79 -40.90 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.58 Total: 3.68 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.03 Total: -2.50 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.12 Total: -49.00 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.56 Total: -14.65 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.69 Total: 15.89 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.50 Total: -0.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.11 -9.79 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069702096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.888 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds