Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86798 * 120.00282 * 2 1 4 4 H 1.48502 * 109.47415 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46881 * 300.00387 * 3 2 1 6 6 H 1.48500 * 109.47089 * 60.00476 * 3 2 1 7 7 C 1.39872 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00305 * 190.70479 * 7 2 1 9 9 C 1.41137 * 119.99628 * 10.69648 * 7 2 1 10 10 C 1.40886 * 120.15980 * 29.30372 * 9 7 2 11 11 C 1.36334 * 119.84005 * 180.25010 * 10 9 7 12 12 C 1.39566 * 120.15958 * 359.49713 * 11 10 9 13 13 N 1.38850 * 119.84533 * 180.25756 * 12 11 10 14 14 S 1.65602 * 120.00353 * 133.73749 * 13 12 11 15 15 O 1.42100 * 106.40130 * 52.16938 * 14 13 12 16 16 O 1.42105 * 106.39937 * 185.08986 * 14 13 12 17 17 C 1.76191 * 107.21781 * 298.62850 * 14 13 12 18 18 C 1.38678 * 120.41796 * 95.36110 * 17 14 13 19 19 C 1.38623 * 118.42154 * 180.02562 * 18 17 14 20 20 C 1.38232 * 119.16163 * 359.97438 * 19 18 17 21 21 N 1.48016 * 119.61679 * 179.97438 * 20 19 18 22 22 O 1.21796 * 120.00366 * 359.97438 * 21 20 19 23 23 O 1.21803 * 119.99962 * 180.02562 * 21 20 19 24 24 N 1.31852 * 120.76349 * 359.97438 * 20 19 18 25 25 C 1.31891 * 121.72379 * 359.70909 * 24 20 19 26 26 C 1.39577 * 120.31439 * 0.23593 * 12 11 10 27 27 C 1.36332 * 120.16382 * 0.02562 * 26 12 11 28 28 H 0.96993 * 119.99642 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.07803 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.91919 * 179.77624 * 11 10 9 31 31 H 0.97009 * 119.99761 * 313.73485 * 13 12 11 32 32 H 1.07998 * 120.78816 * 0.02562 * 18 17 14 33 33 H 1.08002 * 120.41873 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.61327 * 180.30408 * 25 24 20 35 35 H 1.08002 * 119.91498 * 180.02562 * 26 12 11 36 36 H 1.07994 * 120.08419 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3463 -0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8844 2.3963 1.2126 7 6 2.0084 -1.2113 -0.0005 8 1 3.0743 -1.2196 0.1732 9 6 1.3210 -2.4228 -0.2280 10 6 0.1602 -2.4390 -1.0262 11 6 -0.5016 -3.6121 -1.2374 12 6 -0.0258 -4.7969 -0.6737 13 7 -0.7019 -5.9889 -0.8974 14 16 0.1392 -7.3511 -1.3209 15 8 1.1664 -7.5060 -0.3514 16 8 -0.8309 -8.3533 -1.5925 17 6 0.9456 -7.0117 -2.8503 18 6 2.2620 -6.5758 -2.8683 19 6 2.8557 -6.3206 -4.0947 20 6 2.1213 -6.5083 -5.2507 21 7 2.7451 -6.2384 -6.5655 22 8 3.8989 -5.8527 -6.6246 23 8 2.1043 -6.4010 -7.5885 24 7 0.8716 -6.9251 -5.1956 25 6 0.2768 -7.1835 -4.0471 26 6 1.1268 -4.7894 0.1136 27 6 1.7957 -3.6228 0.3377 28 1 -0.4849 0.8400 0.0004 29 1 -0.2066 -1.5236 -1.4667 30 1 -1.3935 -3.6254 -1.8460 31 1 -1.6670 -6.0237 -0.8056 32 1 2.8115 -6.4383 -1.9488 33 1 3.8791 -5.9794 -4.1464 34 1 -0.7468 -7.5280 -4.0419 35 1 1.4895 -5.7101 0.5463 36 1 2.6876 -3.6186 0.9467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069738691.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = -4.621706 kcal Electronic energy + Delta-G solvation = -27665.075612 eV Core-core repulsion = 23438.137435 eV Total energy + Delta-G solvation = -4226.938178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 349.061 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.51581 -40.65806 -38.36747 -37.28120 -36.83890 -35.98192 -35.08293 -33.51800 -33.06649 -32.64807 -29.86977 -28.96381 -27.61208 -25.01651 -24.61068 -23.55770 -21.61148 -21.10035 -19.99655 -19.73419 -19.05923 -18.16372 -17.91384 -17.76179 -17.35803 -17.25103 -16.57172 -15.59038 -15.51780 -15.11113 -14.73477 -14.39664 -14.22696 -13.85596 -13.76050 -13.02918 -12.81046 -12.45400 -12.24193 -12.11853 -11.88982 -11.86339 -11.72955 -11.63323 -11.60989 -11.37264 -11.35256 -11.08712 -10.96709 -10.72171 -10.55911 -10.36514 -10.32330 -9.98442 -9.57097 -9.23204 -7.91817 -7.42208 -7.01724 -4.63411 -0.87182 0.18732 0.40614 0.75505 0.81400 2.41040 2.66204 2.76726 2.93225 2.94822 2.97789 2.98653 3.53102 3.56981 3.72781 3.81930 3.97128 4.20168 4.32230 4.65386 4.80630 4.94578 5.18717 5.30712 5.54491 5.81673 5.96096 6.00028 6.17969 6.61443 6.65474 6.73888 6.78047 6.95700 7.09710 7.30499 7.43038 7.64980 7.70336 7.75646 7.96516 8.31345 8.57477 8.63288 9.91155 Molecular weight = 349.06amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.003853 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.935316 B = 7264.750008 C = 9299.722333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.447 4.447 8 H 0.083 0.917 9 C 0.112 3.888 10 C -0.153 4.153 11 C -0.095 4.095 12 C -0.027 4.027 13 N -1.018 6.018 14 S 2.676 3.324 15 O -0.939 6.939 16 O -0.963 6.963 17 C -0.685 4.685 18 C 0.047 3.953 19 C -0.116 4.116 20 C 0.214 3.786 21 N 0.021 4.979 22 O -0.143 6.143 23 O -0.112 6.112 24 N -0.447 5.447 25 C 0.216 3.784 26 C -0.108 4.108 27 C -0.208 4.208 28 H 0.284 0.716 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.417 0.583 32 H 0.181 0.819 33 H 0.176 0.824 34 H 0.194 0.806 35 H 0.126 0.874 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 -8.518 -3.958 9.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.476 4.476 8 H 0.101 0.899 9 C 0.108 3.892 10 C -0.173 4.173 11 C -0.117 4.117 12 C -0.124 4.124 13 N -0.772 5.772 14 S 2.764 3.236 15 O -0.929 6.929 16 O -0.952 6.952 17 C -0.768 4.768 18 C 0.019 3.981 19 C -0.138 4.138 20 C -0.002 4.002 21 N 0.546 4.454 22 O -0.356 6.356 23 O -0.338 6.338 24 N -0.160 5.160 25 C 0.055 3.945 26 C -0.129 4.129 27 C -0.229 4.229 28 H 0.095 0.905 29 H 0.141 0.859 30 H 0.112 0.888 31 H 0.254 0.746 32 H 0.198 0.802 33 H 0.193 0.807 34 H 0.211 0.789 35 H 0.143 0.857 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.329 -9.464 -3.719 10.174 hybrid contribution 0.486 1.529 -0.213 1.618 sum 0.815 -7.935 -3.932 8.894 Atomic orbital electron populations 1.69804 1.07576 1.29617 1.34329 1.25992 0.94927 1.01687 0.92141 0.86151 0.80859 0.80392 0.78799 1.18221 1.19577 1.19713 1.19724 0.96298 0.90512 1.41080 0.89890 1.17797 0.91250 0.92309 0.87803 1.21047 0.98519 0.96506 1.01242 1.20484 0.99174 0.92658 0.99356 1.16793 1.00149 0.84430 1.11001 1.52250 1.18649 1.25157 1.81136 1.03437 0.73654 0.73083 0.73446 1.93579 1.58815 1.84930 1.55561 1.93578 1.59870 1.56363 1.85419 1.32863 1.07516 1.12246 1.24155 1.21648 0.91888 0.85480 0.99045 1.21960 1.03208 0.98242 0.90405 1.21865 0.92271 1.01889 0.84176 1.43454 1.00820 0.98960 1.02160 1.94578 1.00777 1.47155 1.93127 1.94591 1.63090 1.53018 1.23052 1.66544 1.07901 1.10333 1.31261 1.22542 0.99511 0.88653 0.83806 1.21020 0.95765 0.99185 0.96975 1.20735 1.03259 0.92783 1.06101 0.90516 0.85893 0.88827 0.74575 0.80158 0.80680 0.78932 0.85670 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.35 10.86 55.54 0.60 -17.75 16 2 C 0.07 1.60 5.25 -17.34 -0.09 1.51 16 3 Si 0.91 16.94 29.57 -169.99 -5.03 11.92 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.45 -10.46 9.04 -37.87 -0.34 -10.81 16 8 H 0.08 1.86 7.87 -52.49 -0.41 1.45 16 9 C 0.11 2.59 5.55 -106.79 -0.59 2.00 16 10 C -0.15 -3.42 8.59 -39.27 -0.34 -3.76 16 11 C -0.09 -1.84 9.90 -39.77 -0.39 -2.24 16 12 C -0.03 -0.48 6.13 -83.69 -0.51 -1.00 16 13 N -1.02 -14.20 5.72 32.51 0.19 -14.01 16 14 S 2.68 35.36 5.64 -107.50 -0.61 34.76 16 15 O -0.94 -14.33 14.34 -57.17 -0.82 -15.15 16 16 O -0.96 -13.65 17.45 -57.17 -1.00 -14.65 16 17 C -0.68 -8.47 5.84 -39.44 -0.23 -8.70 16 18 C 0.05 0.55 9.65 -39.28 -0.38 0.17 16 19 C -0.12 -1.35 9.60 -39.44 -0.38 -1.72 16 20 C 0.21 2.96 7.77 -146.20 -1.14 1.82 16 21 N 0.02 0.30 4.45 32.88 0.15 0.45 16 22 O -0.14 -2.03 18.43 -29.46 -0.54 -2.57 16 23 O -0.11 -1.74 19.03 -29.46 -0.56 -2.31 16 24 N -0.45 -6.26 10.05 -10.29 -0.10 -6.36 16 25 C 0.22 2.62 10.69 -17.55 -0.19 2.43 16 26 C -0.11 -2.05 9.15 -39.77 -0.36 -2.42 16 27 C -0.21 -4.37 9.74 -39.26 -0.38 -4.75 16 28 H 0.28 6.01 8.30 -40.82 -0.34 5.67 16 29 H 0.12 2.90 6.25 -52.48 -0.33 2.58 16 30 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.42 4.81 8.95 -34.47 -0.31 4.50 16 32 H 0.18 1.85 7.60 -52.49 -0.40 1.45 16 33 H 0.18 1.59 7.61 -52.49 -0.40 1.19 16 34 H 0.19 1.78 7.75 -52.48 -0.41 1.37 16 35 H 0.13 2.24 5.67 -52.49 -0.30 1.94 16 36 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -28.18 339.85 -10.46 -38.64 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -2.53 Total: 9.38 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -5.33 Total: -27.46 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.83 Total: -37.67 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -2.92 Total: -34.67 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.92 kcal Atomic # 16 Polarization: 35.36 SS G_CDS: -0.61 Total: 34.76 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.18 -10.46 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069738691.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.016 kcal (2) G-P(sol) polarization free energy of solvation -28.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds