Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00469 * 2 1 4 4 H 1.48500 * 109.47114 * 270.00310 * 3 2 1 5 5 H 1.48505 * 109.47040 * 29.99855 * 3 2 1 6 6 H 1.48499 * 109.47469 * 149.99611 * 3 2 1 7 7 C 1.37880 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00274 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99977 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47073 * 180.02562 * 9 7 2 11 11 C 1.46495 * 120.00257 * 95.79802 * 10 9 7 12 12 C 1.50698 * 109.47512 * 89.99581 * 11 10 9 13 13 C 1.38235 * 119.61657 * 94.97437 * 12 11 10 14 14 C 1.38621 * 119.15787 * 179.79368 * 13 12 11 15 15 C 1.38673 * 118.42205 * 0.47336 * 14 13 12 16 16 C 1.38174 * 119.16468 * 359.50973 * 15 14 13 17 17 N 1.31853 * 119.62149 * 275.00677 * 12 11 10 18 18 C 1.34777 * 119.99842 * 275.79551 * 10 9 7 19 19 O 1.21509 * 119.99976 * 185.31191 * 18 10 9 20 20 C 1.48236 * 119.99752 * 5.31214 * 18 10 9 21 21 C 1.40579 * 119.74276 * 186.01054 * 20 18 10 22 22 N 1.31259 * 120.56564 * 179.97438 * 21 20 18 23 23 C 1.33787 * 119.81188 * 359.97438 * 22 21 20 24 24 C 1.40545 * 121.00687 * 180.02562 * 23 22 21 25 25 C 1.36079 * 119.75422 * 179.97438 * 24 23 22 26 26 C 1.39474 * 121.01610 * 0.02562 * 25 24 23 27 27 C 1.35990 * 120.98096 * 359.97438 * 26 25 24 28 28 C 1.40820 * 119.70417 * 359.97438 * 27 26 25 29 29 N 1.32163 * 119.75052 * 5.72989 * 20 18 10 30 30 H 0.97007 * 119.99809 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47380 * 59.99471 * 9 7 2 32 32 H 1.09008 * 109.46688 * 299.99886 * 9 7 2 33 33 H 1.08998 * 109.46937 * 329.99788 * 11 10 9 34 34 H 1.08998 * 109.47163 * 210.00282 * 11 10 9 35 35 H 1.08002 * 120.41887 * 0.02562 * 13 12 11 36 36 H 1.08001 * 120.78685 * 180.24118 * 14 13 12 37 37 H 1.08001 * 120.41646 * 179.77892 * 15 14 13 38 38 H 1.08003 * 119.61885 * 180.24763 * 16 15 14 39 39 H 1.07994 * 119.71810 * 359.97263 * 21 20 18 40 40 H 1.08005 * 120.11894 * 359.95943 * 24 23 22 41 41 H 1.07998 * 119.48837 * 180.02562 * 25 24 23 42 42 H 1.07999 * 119.51146 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.15189 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.3652 -3.2230 -1.2612 12 6 5.8232 -2.9740 -1.5499 13 6 6.7644 -3.9138 -1.1735 14 6 8.1024 -3.6770 -1.4477 15 6 8.4464 -2.4939 -2.0842 16 6 7.4502 -1.6014 -2.4308 17 7 6.1864 -1.8619 -2.1581 18 6 4.1128 -3.2502 1.1621 19 8 4.6076 -4.3599 1.1742 20 6 3.6334 -2.6387 2.4245 21 6 3.8674 -3.2902 3.6480 22 7 3.4505 -2.7630 4.7754 23 6 2.7975 -1.5954 4.7623 24 6 2.3405 -1.0080 5.9545 25 6 1.6795 0.1807 5.9116 26 6 1.4457 0.8297 4.6994 27 6 1.8722 0.2935 3.5247 28 6 2.5609 -0.9348 3.5276 29 7 2.9942 -1.4824 2.3917 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8910 32 1 3.8751 -0.6805 -0.8889 33 1 3.7596 -2.8123 -2.0690 34 1 4.1882 -4.2957 -1.1837 35 1 6.4607 -4.8228 -0.6755 36 1 8.8594 -4.3951 -1.1688 37 1 9.4796 -2.2749 -2.3101 38 1 7.7094 -0.6796 -2.9303 39 1 4.3947 -4.2326 3.6604 40 1 2.5131 -1.4984 6.9012 41 1 1.3306 0.6284 6.8304 42 1 0.9182 1.7721 4.6935 43 1 1.6843 0.8077 2.5937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069742005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = 103.946702 kcal Electronic energy + Delta-G solvation = -30345.919388 eV Core-core repulsion = 26357.629990 eV Total energy + Delta-G solvation = -3988.289399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.133 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.14053 -40.13790 -38.95155 -36.96163 -35.52340 -34.35293 -32.72565 -32.28618 -31.66294 -30.51512 -30.25615 -28.16635 -26.72045 -25.13574 -24.02077 -23.39747 -22.48758 -22.10186 -21.86992 -19.76265 -17.99735 -17.97440 -17.14252 -16.65244 -16.59414 -16.08482 -15.59029 -15.44083 -15.36264 -14.93561 -14.66530 -14.25693 -14.11599 -13.96233 -13.68457 -13.46802 -13.17371 -13.06037 -12.82599 -12.47795 -12.24145 -11.76066 -11.67228 -11.58985 -11.57571 -11.55838 -11.19247 -11.02410 -10.90278 -10.34755 -10.16777 -9.88169 -9.75319 -9.55787 -9.29580 -8.94073 -8.69025 -8.63257 -8.35473 -8.28378 -7.89859 -6.15375 -4.03262 0.42650 0.75092 1.18584 1.40833 2.22343 2.76347 3.16860 3.26881 3.32444 3.46939 3.55116 4.05058 4.30430 4.31685 4.39872 4.48945 4.49924 4.61501 4.88299 4.92973 4.99058 5.10114 5.16392 5.20669 5.24349 5.28522 5.37823 5.50311 5.62119 5.66724 5.75310 5.90906 6.07375 6.09015 6.16080 6.25093 6.28930 6.29882 6.47491 6.49844 6.59188 6.80992 6.90033 7.00991 7.27197 7.54215 7.60425 7.94311 8.09507 8.18223 8.41099 8.65709 8.88372 9.45119 10.97115 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.004516 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.025334 B = 6198.429094 C = 7744.639652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.853 3.147 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.480 4.480 8 H 0.074 0.926 9 C 0.208 3.792 10 N -0.561 5.561 11 C 0.166 3.834 12 C 0.117 3.883 13 C -0.148 4.148 14 C -0.083 4.083 15 C -0.179 4.179 16 C 0.093 3.907 17 N -0.468 5.468 18 C 0.576 3.424 19 O -0.558 6.558 20 C 0.034 3.966 21 C 0.129 3.871 22 N -0.448 5.448 23 C 0.091 3.909 24 C -0.102 4.102 25 C -0.088 4.088 26 C -0.124 4.124 27 C -0.049 4.049 28 C 0.069 3.931 29 N -0.311 5.311 30 H 0.264 0.736 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.152 0.848 39 H 0.178 0.822 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.763 -1.450 4.192 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.124 4.124 3 Si 0.679 3.321 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.520 4.520 8 H 0.092 0.908 9 C 0.087 3.913 10 N -0.288 5.288 11 C 0.042 3.958 12 C -0.022 4.022 13 C -0.168 4.168 14 C -0.109 4.109 15 C -0.199 4.199 16 C -0.064 4.064 17 N -0.177 5.177 18 C 0.363 3.637 19 O -0.438 6.438 20 C -0.121 4.121 21 C -0.046 4.046 22 N -0.162 5.162 23 C -0.033 4.033 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.144 4.144 27 C -0.068 4.068 28 C -0.057 4.057 29 N -0.029 5.029 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.195 0.805 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.118 -1.147 4.056 10.961 hybrid contribution 0.904 0.469 0.124 1.026 sum 11.022 -0.678 4.179 11.807 Atomic orbital electron populations 1.69895 1.05998 1.26804 1.50265 1.24673 0.94413 0.98243 0.95064 0.87243 0.80978 0.84553 0.79278 1.19960 1.20843 1.18600 1.21181 0.88731 0.94576 1.47463 0.90822 1.20299 0.96005 0.76825 0.98166 1.47842 1.60604 1.16252 1.04147 1.20290 0.88791 0.99238 0.87479 1.21817 0.97465 0.89609 0.93308 1.22156 0.93320 1.01452 0.99891 1.21570 0.96379 0.96806 0.96121 1.22101 1.00804 0.95779 1.01258 1.22743 0.88067 0.98863 0.96740 1.67556 1.19591 1.19259 1.11343 1.17674 0.78590 0.84547 0.82900 1.90672 1.46872 1.19829 1.86398 1.22259 1.00000 0.94531 0.95309 1.23810 0.94175 0.99379 0.87253 1.68761 1.09511 1.09177 1.28752 1.19789 0.96834 0.92274 0.94417 1.20673 0.99184 0.95796 0.96528 1.20973 0.96961 0.94650 0.98228 1.20948 1.00656 1.00841 0.91996 1.21065 0.93686 0.92705 0.99383 1.19843 0.99781 0.96847 0.89236 1.69793 1.00474 1.07220 1.25435 0.92598 0.92622 0.94823 0.87947 0.88691 0.84093 0.85135 0.85234 0.83045 0.80517 0.84742 0.85123 0.85049 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 13.96 55.43 0.77 -24.40 16 2 C 0.08 2.07 5.14 -17.82 -0.09 1.98 16 3 Si 0.85 19.93 25.24 -169.99 -4.29 15.64 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.48 -12.47 7.93 -34.44 -0.27 -12.74 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.21 4.77 3.82 -5.19 -0.02 4.75 16 10 N -0.56 -11.58 2.46 -177.41 -0.44 -12.02 16 11 C 0.17 2.95 5.65 -5.20 -0.03 2.92 16 12 C 0.12 1.94 6.36 -82.58 -0.53 1.42 16 13 C -0.15 -2.13 9.72 -39.44 -0.38 -2.52 16 14 C -0.08 -0.99 10.18 -39.28 -0.40 -1.39 16 15 C -0.18 -2.05 10.11 -39.44 -0.40 -2.45 16 16 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 17 N -0.47 -7.91 10.27 -9.47 -0.10 -8.00 16 18 C 0.58 11.84 7.60 -12.15 -0.09 11.75 16 19 O -0.56 -11.19 15.71 5.36 0.08 -11.11 16 20 C 0.03 0.69 6.57 -82.73 -0.54 0.15 16 21 C 0.13 2.32 10.75 -16.91 -0.18 2.14 16 22 N -0.45 -8.08 10.45 -10.52 -0.11 -8.19 16 23 C 0.09 1.66 6.60 -84.70 -0.56 1.10 16 24 C -0.10 -1.48 9.98 -39.49 -0.39 -1.88 16 25 C -0.09 -1.12 9.95 -39.90 -0.40 -1.52 16 26 C -0.12 -1.83 9.95 -39.93 -0.40 -2.23 16 27 C -0.05 -0.93 9.99 -39.41 -0.39 -1.33 16 28 C 0.07 1.39 6.60 -84.79 -0.56 0.83 16 29 N -0.31 -6.84 4.85 -7.39 -0.04 -6.88 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.06 1.34 4.84 -51.93 -0.25 1.09 16 32 H 0.03 0.79 7.46 -51.92 -0.39 0.40 16 33 H 0.10 1.84 8.07 -51.93 -0.42 1.42 16 34 H 0.09 1.56 7.40 -51.93 -0.38 1.18 16 35 H 0.14 1.97 7.80 -52.49 -0.41 1.56 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.18 2.74 7.64 -52.49 -0.40 2.34 16 40 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.14 2.93 5.15 -52.49 -0.27 2.66 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -31.18 364.83 -9.10 -40.27 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.65 Total: 7.13 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -5.84 Total: 2.05 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.09 Total: -59.49 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.29 Total: 15.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.18 -9.10 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069742005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.221 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds