Wall clock time and date at job start Tue Mar 31 2020 05:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00469 * 2 1 4 4 H 1.48500 * 109.47114 * 270.00310 * 3 2 1 5 5 H 1.48505 * 109.47040 * 29.99855 * 3 2 1 6 6 H 1.48499 * 109.47469 * 149.99611 * 3 2 1 7 7 C 1.37880 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00274 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99977 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47073 * 180.02562 * 9 7 2 11 11 C 1.46495 * 120.00257 * 95.79802 * 10 9 7 12 12 C 1.50698 * 109.47512 * 89.99581 * 11 10 9 13 13 C 1.38235 * 119.61657 * 94.97437 * 12 11 10 14 14 C 1.38621 * 119.15787 * 179.79368 * 13 12 11 15 15 C 1.38673 * 118.42205 * 0.47336 * 14 13 12 16 16 C 1.38174 * 119.16468 * 359.50973 * 15 14 13 17 17 N 1.31853 * 119.62149 * 275.00677 * 12 11 10 18 18 C 1.34777 * 119.99842 * 275.79551 * 10 9 7 19 19 O 1.21509 * 119.99976 * 185.31191 * 18 10 9 20 20 C 1.48236 * 119.99752 * 5.31214 * 18 10 9 21 21 C 1.40579 * 119.74276 * 186.01054 * 20 18 10 22 22 N 1.31259 * 120.56564 * 179.97438 * 21 20 18 23 23 C 1.33787 * 119.81188 * 359.97438 * 22 21 20 24 24 C 1.40545 * 121.00687 * 180.02562 * 23 22 21 25 25 C 1.36079 * 119.75422 * 179.97438 * 24 23 22 26 26 C 1.39474 * 121.01610 * 0.02562 * 25 24 23 27 27 C 1.35990 * 120.98096 * 359.97438 * 26 25 24 28 28 C 1.40820 * 119.70417 * 359.97438 * 27 26 25 29 29 N 1.32163 * 119.75052 * 5.72989 * 20 18 10 30 30 H 0.97007 * 119.99809 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47380 * 59.99471 * 9 7 2 32 32 H 1.09008 * 109.46688 * 299.99886 * 9 7 2 33 33 H 1.08998 * 109.46937 * 329.99788 * 11 10 9 34 34 H 1.08998 * 109.47163 * 210.00282 * 11 10 9 35 35 H 1.08002 * 120.41887 * 0.02562 * 13 12 11 36 36 H 1.08001 * 120.78685 * 180.24118 * 14 13 12 37 37 H 1.08001 * 120.41646 * 179.77892 * 15 14 13 38 38 H 1.08003 * 119.61885 * 180.24763 * 16 15 14 39 39 H 1.07994 * 119.71810 * 359.97263 * 21 20 18 40 40 H 1.08005 * 120.11894 * 359.95943 * 24 23 22 41 41 H 1.07998 * 119.48837 * 180.02562 * 25 24 23 42 42 H 1.07999 * 119.51146 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.15189 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.3652 -3.2230 -1.2612 12 6 5.8232 -2.9740 -1.5499 13 6 6.7644 -3.9138 -1.1735 14 6 8.1024 -3.6770 -1.4477 15 6 8.4464 -2.4939 -2.0842 16 6 7.4502 -1.6014 -2.4308 17 7 6.1864 -1.8619 -2.1581 18 6 4.1128 -3.2502 1.1621 19 8 4.6076 -4.3599 1.1742 20 6 3.6334 -2.6387 2.4245 21 6 3.8674 -3.2902 3.6480 22 7 3.4505 -2.7630 4.7754 23 6 2.7975 -1.5954 4.7623 24 6 2.3405 -1.0080 5.9545 25 6 1.6795 0.1807 5.9116 26 6 1.4457 0.8297 4.6994 27 6 1.8722 0.2935 3.5247 28 6 2.5609 -0.9348 3.5276 29 7 2.9942 -1.4824 2.3917 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8910 32 1 3.8751 -0.6805 -0.8889 33 1 3.7596 -2.8123 -2.0690 34 1 4.1882 -4.2957 -1.1837 35 1 6.4607 -4.8228 -0.6755 36 1 8.8594 -4.3951 -1.1688 37 1 9.4796 -2.2749 -2.3101 38 1 7.7094 -0.6796 -2.9303 39 1 4.3947 -4.2326 3.6604 40 1 2.5131 -1.4984 6.9012 41 1 1.3306 0.6284 6.8304 42 1 0.9182 1.7721 4.6935 43 1 1.6843 0.8077 2.5937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069742005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:29 Heat of formation + Delta-G solvation = 84.133130 kcal Electronic energy + Delta-G solvation = -30346.778569 eV Core-core repulsion = 26357.629990 eV Total energy + Delta-G solvation = -3989.148580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.133 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.57318 -41.33265 -40.38029 -38.26868 -37.15448 -35.78583 -34.60108 -33.40711 -32.97661 -31.85939 -31.53752 -29.94568 -28.13001 -26.55228 -25.40106 -24.59810 -24.19911 -23.35184 -23.13308 -21.21628 -19.43804 -19.36405 -19.06243 -18.11543 -17.80175 -17.40290 -16.96720 -16.81247 -16.66484 -16.27647 -16.09249 -15.82488 -15.47313 -15.36380 -15.12191 -14.75983 -14.65452 -14.24114 -14.21475 -14.02908 -13.95733 -13.21187 -12.93265 -12.90499 -12.89372 -12.80618 -12.68040 -12.60288 -12.52355 -12.14807 -11.84691 -11.70365 -11.38118 -10.80923 -10.69062 -10.43668 -10.07458 -10.03129 -9.81470 -9.59199 -9.53496 -8.21521 -6.15905 -0.95616 -0.60751 0.11540 0.39122 0.85402 1.28274 1.33639 1.36229 1.42704 1.99088 2.12840 2.34895 2.81124 2.97537 3.04703 3.07227 3.18070 3.21713 3.34766 3.59917 3.80817 3.80985 4.00229 4.03157 4.14811 4.19326 4.25517 4.26539 4.37990 4.45989 4.56021 4.71445 4.74483 4.85055 4.88260 4.89681 5.02607 5.14158 5.21174 5.24186 5.27845 5.34187 5.52100 5.57181 5.73308 5.80876 6.14284 6.19951 6.43131 6.63327 6.74892 7.03435 7.09165 7.39858 8.95577 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.004516 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.025334 B = 6198.429094 C = 7744.639652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.042 3.958 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.478 4.478 8 H 0.026 0.974 9 C 0.230 3.770 10 N -0.567 5.567 11 C 0.165 3.835 12 C 0.093 3.907 13 C -0.156 4.156 14 C -0.078 4.078 15 C -0.163 4.163 16 C 0.079 3.921 17 N -0.507 5.507 18 C 0.572 3.428 19 O -0.557 6.557 20 C 0.015 3.985 21 C 0.127 3.873 22 N -0.440 5.440 23 C 0.077 3.923 24 C -0.100 4.100 25 C -0.065 4.065 26 C -0.099 4.099 27 C -0.094 4.094 28 C 0.043 3.957 29 N -0.345 5.345 30 H 0.265 0.735 31 H 0.050 0.950 32 H 0.026 0.974 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.200 0.800 40 H 0.167 0.833 41 H 0.187 0.813 42 H 0.165 0.835 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.079 -0.469 6.963 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.156 4.156 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.517 4.517 8 H 0.045 0.955 9 C 0.108 3.892 10 N -0.295 5.295 11 C 0.042 3.958 12 C -0.045 4.045 13 C -0.177 4.177 14 C -0.104 4.104 15 C -0.182 4.182 16 C -0.078 4.078 17 N -0.217 5.217 18 C 0.359 3.641 19 O -0.437 6.437 20 C -0.140 4.140 21 C -0.048 4.048 22 N -0.154 5.154 23 C -0.047 4.047 24 C -0.119 4.119 25 C -0.085 4.085 26 C -0.119 4.119 27 C -0.113 4.113 28 C -0.083 4.083 29 N -0.063 5.063 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.157 0.843 36 H 0.184 0.816 37 H 0.189 0.811 38 H 0.193 0.807 39 H 0.217 0.783 40 H 0.184 0.816 41 H 0.204 0.796 42 H 0.182 0.818 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.448 -0.188 6.804 14.187 hybrid contribution 0.213 0.140 -0.549 0.606 sum 12.661 -0.048 6.254 14.122 Atomic orbital electron populations 1.70016 1.07560 1.27549 1.52886 1.25192 0.94851 1.01038 0.94551 0.86374 0.80120 0.81210 0.79115 1.20030 1.19418 1.18170 1.21051 0.90099 0.92699 1.47848 0.95531 1.19845 0.93790 0.78267 0.97258 1.47832 1.60788 1.15565 1.05324 1.20325 0.90461 0.99114 0.85890 1.21499 0.96640 0.90891 0.95493 1.22197 0.94386 1.00940 1.00141 1.22002 0.95787 0.97668 0.94962 1.22535 1.02259 0.94479 0.98970 1.23270 0.87427 1.00333 0.96793 1.67451 1.21878 1.19825 1.12567 1.17835 0.78521 0.84637 0.83097 1.90641 1.46960 1.19563 1.86524 1.22437 1.00684 0.94752 0.96082 1.24041 0.94396 0.99965 0.86433 1.68832 1.09119 1.09115 1.28299 1.20256 0.97078 0.92321 0.95079 1.21140 0.98272 0.96291 0.96190 1.21548 0.94374 0.93291 0.99264 1.21444 0.97906 1.01354 0.91210 1.21072 0.96756 0.93333 1.00180 1.20170 1.00728 0.97778 0.89668 1.69606 1.01265 1.08042 1.27377 0.92584 0.93263 0.95569 0.89386 0.88077 0.84274 0.81595 0.81094 0.80741 0.78331 0.81557 0.79604 0.81795 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.08 13.96 21.45 0.30 -55.78 16 2 C 0.04 2.33 5.14 84.66 0.43 2.77 16 3 Si 0.91 42.89 25.24 68.60 1.73 44.62 16 4 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 7 C -0.48 -26.72 7.93 25.60 0.20 -26.52 16 8 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 9 C 0.23 11.26 3.82 85.63 0.33 11.59 16 10 N -0.57 -25.02 2.46 -833.48 -2.05 -27.07 16 11 C 0.17 6.33 5.65 85.63 0.48 6.82 16 12 C 0.09 3.18 6.36 42.55 0.27 3.45 16 13 C -0.16 -4.46 9.72 22.36 0.22 -4.24 16 14 C -0.08 -1.68 10.18 22.47 0.23 -1.45 16 15 C -0.16 -3.22 10.11 22.36 0.23 -3.00 16 16 C 0.08 2.03 11.18 84.67 0.95 2.98 16 17 N -0.51 -17.47 10.27 -183.89 -1.89 -19.36 16 18 C 0.57 24.72 7.60 86.90 0.66 25.38 16 19 O -0.56 -23.03 15.71 -3.74 -0.06 -23.09 16 20 C 0.02 0.65 6.57 42.33 0.28 0.93 16 21 C 0.13 4.59 10.75 85.35 0.92 5.51 16 22 N -0.44 -15.43 10.45 -187.21 -1.96 -17.38 16 23 C 0.08 2.71 6.60 40.35 0.27 2.98 16 24 C -0.10 -2.50 9.98 22.33 0.22 -2.28 16 25 C -0.07 -1.33 9.95 22.07 0.22 -1.11 16 26 C -0.10 -2.62 9.95 22.05 0.22 -2.40 16 27 C -0.09 -3.57 9.99 22.38 0.22 -3.35 16 28 C 0.04 1.77 6.60 40.48 0.27 2.04 16 29 N -0.35 -15.92 4.85 -177.28 -0.86 -16.78 16 30 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 31 H 0.05 2.51 4.84 -2.39 -0.01 2.50 16 32 H 0.03 1.31 7.46 -2.38 -0.02 1.29 16 33 H 0.09 3.51 8.07 -2.39 -0.02 3.49 16 34 H 0.10 3.61 7.40 -2.39 -0.02 3.59 16 35 H 0.14 3.92 7.80 -2.91 -0.02 3.89 16 36 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.20 6.08 7.64 -2.91 -0.02 6.06 16 40 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 43 H 0.11 4.84 5.15 -2.91 -0.02 4.83 16 Total: -1.00 -75.03 364.83 2.84 -72.19 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 1.00 Total: 22.56 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 6.61 Total: 20.09 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -6.45 Total: -136.37 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.09 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.73 Total: 44.62 kcal Total: -75.03 2.84 -72.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069742005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.325 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds