Wall clock time and date at job start Tue Mar 31 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 S 1.81399 * 109.47004 * 119.99866 * 2 1 3 5 5 C 1.81400 * 103.00154 * 295.00238 * 4 2 1 6 6 C 1.50704 * 109.47383 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99425 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00182 * 179.97438 * 6 5 4 9 9 C 1.37092 * 120.00248 * 180.02562 * 8 6 5 10 10 H 1.08002 * 119.99868 * 359.97438 * 9 8 6 11 11 C 1.38943 * 120.00342 * 179.97438 * 9 8 6 12 12 N 1.31417 * 119.99987 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00384 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46984 * 59.99744 * 13 11 9 15 15 H 1.48493 * 109.47471 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46830 * 300.00073 * 13 11 9 17 17 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 18 18 C 1.38262 * 119.94773 * 299.73337 * 17 2 1 19 19 C 1.38142 * 120.05657 * 179.72232 * 18 17 2 20 20 C 1.38730 * 119.94127 * 0.54688 * 19 18 17 21 21 O 1.35901 * 120.05578 * 179.74823 * 20 19 18 22 22 C 1.42904 * 116.99674 * 359.97421 * 21 20 19 23 23 F 1.39901 * 109.46970 * 60.00312 * 22 21 20 24 24 F 1.39904 * 109.46706 * 180.02562 * 22 21 20 25 25 F 1.39895 * 109.47397 * 299.99805 * 22 21 20 26 26 C 1.38734 * 119.89199 * 359.72599 * 20 19 18 27 27 C 1.38140 * 119.94120 * 359.97438 * 26 20 19 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.09001 * 109.47264 * 299.99851 * 5 4 2 32 32 H 1.09004 * 109.47230 * 59.99615 * 5 4 2 33 33 H 0.97006 * 120.00040 * 359.97438 * 8 6 5 34 34 H 0.97003 * 119.99872 * 180.02562 * 12 11 9 35 35 H 1.08002 * 119.96717 * 359.97438 * 18 17 2 36 36 H 1.07995 * 120.02882 * 180.26959 * 19 18 17 37 37 H 1.07995 * 120.02876 * 179.97438 * 26 20 19 38 38 H 1.07998 * 119.97419 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5664 0.2153 2.8309 6 6 1.9984 -0.3689 4.1513 7 8 2.6273 -1.4056 4.1789 8 7 1.6858 0.2606 5.3012 9 6 2.0792 -0.2705 6.5023 10 1 2.6393 -1.1936 6.5270 11 6 1.7575 0.3788 7.6878 12 7 1.0756 1.5018 7.6578 13 14 2.2929 -0.3453 9.3244 14 1 3.7741 -0.4452 9.3606 15 1 1.8293 0.5319 10.4293 16 1 1.7015 -1.6981 9.4843 17 6 2.0324 -0.7105 -1.2304 18 6 1.7023 -2.0358 -1.4452 19 6 2.1568 -2.6877 -2.5752 20 6 2.9545 -2.0146 -3.4891 21 8 3.4072 -2.6551 -4.5990 22 6 3.0232 -4.0220 -4.7611 23 9 1.6282 -4.1108 -4.8184 24 9 3.5720 -4.5231 -5.9464 25 9 3.4940 -4.7704 -3.6769 26 6 3.2890 -0.6864 -3.2685 27 6 2.8269 -0.0373 -2.1400 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.0001 1.2085 2.7142 32 1 0.4791 0.2882 2.8037 33 1 1.1832 1.0900 5.2790 34 1 0.8514 1.9553 8.4855 35 1 1.0852 -2.5607 -0.7310 36 1 1.8951 -3.7216 -2.7448 37 1 3.9102 -0.1604 -3.9782 38 1 3.0866 0.9968 -1.9679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069777929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:07 Heat of formation + Delta-G solvation = -210.370795 kcal Electronic energy + Delta-G solvation = -26973.432275 eV Core-core repulsion = 22299.255750 eV Total energy + Delta-G solvation = -4674.176525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.79210 -48.52238 -48.37768 -40.61676 -38.41627 -38.13529 -34.09336 -33.98917 -31.45468 -31.39332 -29.77054 -28.86331 -26.32707 -24.66238 -24.25679 -23.22944 -21.63980 -20.02144 -19.58480 -19.50090 -19.36463 -18.04725 -17.14144 -16.67691 -15.94244 -15.88401 -15.58802 -15.43005 -15.10506 -14.85365 -14.78665 -14.65430 -14.57393 -14.51921 -14.49459 -14.46426 -14.12310 -13.86425 -13.60430 -13.51161 -13.16857 -12.79198 -12.50798 -12.08435 -11.94855 -11.80508 -11.56601 -11.29929 -11.15448 -11.07059 -10.48305 -10.27442 -9.59840 -9.58548 -9.36802 -8.67359 -8.57975 -8.07037 -7.34092 -6.49298 -3.90673 0.75005 0.97944 1.12702 1.86995 2.48813 2.80932 3.15927 3.22642 3.27420 3.33744 3.41479 3.65787 3.76855 4.12412 4.30517 4.35237 4.44101 4.70121 4.86068 4.92345 4.97550 5.09087 5.14177 5.20369 5.45107 5.56734 5.62165 5.64159 5.69881 5.75789 5.88338 5.99908 6.06635 6.17051 6.27045 6.58840 7.48436 7.94561 8.49195 9.08146 9.41842 9.92157 10.67974 Molecular weight = 349.07amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.001860 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.235787 B =15050.913955 C =15638.583315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 H 0.094 0.906 4 S -0.164 6.164 5 C -0.114 4.114 6 C 0.453 3.547 7 O -0.576 6.576 8 N -0.554 5.554 9 C -0.301 4.301 10 H 0.104 0.896 11 C 0.024 3.976 12 N -0.899 5.899 13 Si 0.933 3.067 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.071 4.071 18 C -0.059 4.059 19 C -0.187 4.187 20 C 0.099 3.901 21 O -0.312 6.312 22 C 0.603 3.397 23 F -0.165 7.165 24 F -0.134 7.134 25 F -0.163 7.163 26 C -0.122 4.122 27 C -0.070 4.070 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.394 0.606 34 H 0.273 0.727 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 -2.734 -25.784 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 H 0.112 0.888 4 S 0.065 5.935 5 C -0.266 4.266 6 C 0.237 3.763 7 O -0.461 6.461 8 N -0.190 5.190 9 C -0.431 4.431 10 H 0.122 0.878 11 C -0.178 4.178 12 N -0.540 5.540 13 Si 0.760 3.240 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.073 4.073 18 C -0.078 4.078 19 C -0.205 4.205 20 C 0.057 3.943 21 O -0.232 6.232 22 C 0.513 3.487 23 F -0.147 7.147 24 F -0.115 7.115 25 F -0.145 7.145 26 C -0.141 4.141 27 C -0.090 4.090 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.227 0.773 34 H 0.083 0.917 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.333 -4.203 -25.612 25.957 hybrid contribution -0.889 1.119 0.771 1.624 sum -0.555 -3.085 -24.841 25.038 Atomic orbital electron populations 1.22114 0.92475 1.03419 1.02323 1.22199 0.99015 1.01747 0.94659 0.88801 1.87610 1.74380 1.35302 0.96160 1.23503 1.04356 1.01982 0.96727 1.18992 0.86192 0.87173 0.83927 1.90568 1.44332 1.24753 1.86403 1.41762 1.49107 1.23637 1.04518 1.19685 1.33110 1.08358 0.81948 0.87778 1.25293 0.96723 0.95849 0.99932 1.69605 1.38643 1.16524 1.29252 0.85878 0.79165 0.78705 0.80276 1.19780 1.20903 1.19775 1.19331 0.98731 0.94277 0.94939 1.20919 0.97687 0.93615 0.95564 1.21494 1.01638 1.01045 0.96347 1.18714 0.97607 0.92680 0.85333 1.86398 1.71436 1.21583 1.43760 1.19355 0.74716 0.79559 0.75099 1.93304 1.29541 1.95861 1.96032 1.93305 1.85922 1.85933 1.46333 1.93324 1.88398 1.77387 1.55390 1.20345 1.03226 0.90952 0.99534 1.20900 0.95543 1.00181 0.92376 0.91920 0.91145 0.91826 0.88817 0.88719 0.77305 0.91675 0.84192 0.84823 0.84303 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.92 37.16 0.33 -1.08 16 2 C -0.05 -0.53 3.01 -27.88 -0.08 -0.62 16 3 H 0.09 0.93 7.87 -51.92 -0.41 0.52 16 4 S -0.16 -2.67 19.89 -107.50 -2.14 -4.81 16 5 C -0.11 -1.97 6.12 36.01 0.22 -1.75 16 6 C 0.45 10.66 7.80 -10.99 -0.09 10.58 16 7 O -0.58 -15.79 15.44 5.55 0.09 -15.71 16 8 N -0.55 -13.86 5.29 -10.97 -0.06 -13.92 16 9 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 10 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 11 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 12 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 13 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C -0.07 -0.76 4.78 -104.60 -0.50 -1.26 16 18 C -0.06 -0.64 8.76 -39.61 -0.35 -0.99 16 19 C -0.19 -1.95 8.26 -39.43 -0.33 -2.28 16 20 C 0.10 1.01 6.48 -39.22 -0.25 0.76 16 21 O -0.31 -3.06 10.37 -19.43 -0.20 -3.26 16 22 C 0.60 5.37 3.42 101.05 0.35 5.72 16 23 F -0.17 -1.45 15.56 2.25 0.04 -1.41 16 24 F -0.13 -1.12 17.53 2.25 0.04 -1.08 16 25 F -0.16 -1.55 15.56 2.25 0.04 -1.52 16 26 C -0.12 -1.10 9.99 -39.43 -0.39 -1.49 16 27 C -0.07 -0.64 9.66 -39.61 -0.38 -1.02 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.70 7.40 -51.93 -0.38 0.31 16 30 H 0.06 0.63 6.92 -51.93 -0.36 0.27 16 31 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 32 H 0.09 1.42 7.14 -51.92 -0.37 1.05 16 33 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.14 1.50 7.59 -52.49 -0.40 1.10 16 36 H 0.13 1.28 5.10 -52.49 -0.27 1.01 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.14 0.95 7.94 -52.49 -0.42 0.53 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -31.07 353.62 -6.60 -37.67 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -3.71 Total: 7.57 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.72 Total: -1.34 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.67 Total: -37.19 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.12 Total: -18.97 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.11 Total: -4.01 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.14 Total: -4.81 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.07 -6.60 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069777929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.705 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds