Wall clock time and date at job start Tue Mar 31 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 S 1.81399 * 109.47004 * 119.99866 * 2 1 3 5 5 C 1.81400 * 103.00154 * 295.00238 * 4 2 1 6 6 C 1.50704 * 109.47383 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99425 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00182 * 179.97438 * 6 5 4 9 9 C 1.37092 * 120.00248 * 180.02562 * 8 6 5 10 10 H 1.08002 * 119.99868 * 359.97438 * 9 8 6 11 11 C 1.38943 * 120.00342 * 179.97438 * 9 8 6 12 12 N 1.31417 * 119.99987 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00384 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46984 * 59.99744 * 13 11 9 15 15 H 1.48493 * 109.47471 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46830 * 300.00073 * 13 11 9 17 17 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 18 18 C 1.38262 * 119.94773 * 299.73337 * 17 2 1 19 19 C 1.38142 * 120.05657 * 179.72232 * 18 17 2 20 20 C 1.38730 * 119.94127 * 0.54688 * 19 18 17 21 21 O 1.35901 * 120.05578 * 179.74823 * 20 19 18 22 22 C 1.42904 * 116.99674 * 359.97421 * 21 20 19 23 23 F 1.39901 * 109.46970 * 60.00312 * 22 21 20 24 24 F 1.39904 * 109.46706 * 180.02562 * 22 21 20 25 25 F 1.39895 * 109.47397 * 299.99805 * 22 21 20 26 26 C 1.38734 * 119.89199 * 359.72599 * 20 19 18 27 27 C 1.38140 * 119.94120 * 359.97438 * 26 20 19 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.09001 * 109.47264 * 299.99851 * 5 4 2 32 32 H 1.09004 * 109.47230 * 59.99615 * 5 4 2 33 33 H 0.97006 * 120.00040 * 359.97438 * 8 6 5 34 34 H 0.97003 * 119.99872 * 180.02562 * 12 11 9 35 35 H 1.08002 * 119.96717 * 359.97438 * 18 17 2 36 36 H 1.07995 * 120.02882 * 180.26959 * 19 18 17 37 37 H 1.07995 * 120.02876 * 179.97438 * 26 20 19 38 38 H 1.07998 * 119.97419 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5664 0.2153 2.8309 6 6 1.9984 -0.3689 4.1513 7 8 2.6273 -1.4056 4.1789 8 7 1.6858 0.2606 5.3012 9 6 2.0792 -0.2705 6.5023 10 1 2.6393 -1.1936 6.5270 11 6 1.7575 0.3788 7.6878 12 7 1.0756 1.5018 7.6578 13 14 2.2929 -0.3453 9.3244 14 1 3.7741 -0.4452 9.3606 15 1 1.8293 0.5319 10.4293 16 1 1.7015 -1.6981 9.4843 17 6 2.0324 -0.7105 -1.2304 18 6 1.7023 -2.0358 -1.4452 19 6 2.1568 -2.6877 -2.5752 20 6 2.9545 -2.0146 -3.4891 21 8 3.4072 -2.6551 -4.5990 22 6 3.0232 -4.0220 -4.7611 23 9 1.6282 -4.1108 -4.8184 24 9 3.5720 -4.5231 -5.9464 25 9 3.4940 -4.7704 -3.6769 26 6 3.2890 -0.6864 -3.2685 27 6 2.8269 -0.0373 -2.1400 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.0001 1.2085 2.7142 32 1 0.4791 0.2882 2.8037 33 1 1.1832 1.0900 5.2790 34 1 0.8514 1.9553 8.4855 35 1 1.0852 -2.5607 -0.7310 36 1 1.8951 -3.7216 -2.7448 37 1 3.9102 -0.1604 -3.9782 38 1 3.0866 0.9968 -1.9679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069777929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:06 Heat of formation + Delta-G solvation = -228.627783 kcal Electronic energy + Delta-G solvation = -26974.223958 eV Core-core repulsion = 22299.255750 eV Total energy + Delta-G solvation = -4674.968207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.51026 -49.22563 -49.10795 -41.36690 -40.07129 -39.16330 -36.05226 -34.84922 -33.38745 -32.19239 -31.03836 -29.95061 -27.07788 -26.62114 -25.05398 -23.96598 -22.48563 -21.39077 -20.74110 -20.22387 -20.11469 -20.01776 -18.08764 -17.82385 -17.50276 -16.70235 -16.51085 -16.32761 -16.29820 -16.17722 -15.86426 -15.76352 -15.57627 -15.50993 -15.37061 -15.22118 -15.19043 -14.79421 -14.63717 -14.33701 -14.31542 -14.04516 -13.74066 -13.52397 -13.35252 -12.90613 -12.79127 -12.63194 -12.46537 -12.16751 -12.07830 -11.99887 -11.55593 -10.68925 -10.52471 -10.11498 -10.08046 -9.48146 -8.60680 -8.50672 -6.00041 -0.09769 0.23516 0.40154 0.75040 1.37983 1.41634 1.52425 1.66654 1.76573 1.95112 2.28581 2.57533 2.70371 2.93137 3.13428 3.15585 3.51832 3.58645 3.68509 3.94588 4.18614 4.20776 4.22011 4.23436 4.35231 4.43088 4.46543 4.76448 4.86151 4.94098 4.98105 5.12938 5.25358 5.33313 5.37839 5.49864 5.84373 5.92200 6.51546 7.06046 7.45912 8.01208 8.66099 Molecular weight = 349.07amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.001860 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.235787 B =15050.913955 C =15638.583315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 H 0.115 0.885 4 S -0.228 6.228 5 C -0.097 4.097 6 C 0.449 3.551 7 O -0.620 6.620 8 N -0.562 5.562 9 C -0.337 4.337 10 H 0.079 0.921 11 C -0.009 4.009 12 N -0.916 5.916 13 Si 0.994 3.006 14 H -0.272 1.272 15 H -0.268 1.268 16 H -0.272 1.272 17 C -0.085 4.085 18 C -0.070 4.070 19 C -0.197 4.197 20 C 0.090 3.910 21 O -0.314 6.314 22 C 0.607 3.393 23 F -0.164 7.164 24 F -0.130 7.130 25 F -0.168 7.168 26 C -0.121 4.121 27 C -0.063 4.063 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 -1.228 -26.881 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 H 0.133 0.867 4 S 0.001 5.999 5 C -0.248 4.248 6 C 0.235 3.765 7 O -0.507 6.507 8 N -0.199 5.199 9 C -0.466 4.466 10 H 0.097 0.903 11 C -0.210 4.210 12 N -0.556 5.556 13 Si 0.817 3.183 14 H -0.197 1.197 15 H -0.193 1.193 16 H -0.197 1.197 17 C -0.087 4.087 18 C -0.089 4.089 19 C -0.215 4.215 20 C 0.047 3.953 21 O -0.234 6.234 22 C 0.516 3.484 23 F -0.146 7.146 24 F -0.111 7.111 25 F -0.150 7.150 26 C -0.139 4.139 27 C -0.083 4.083 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.181 0.819 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.108 -2.675 -26.716 26.850 hybrid contribution -0.818 0.626 0.955 1.405 sum -0.710 -2.049 -25.761 25.852 Atomic orbital electron populations 1.22116 0.91352 1.03403 1.03395 1.22214 0.99742 1.01795 0.91329 0.86690 1.87837 1.75490 1.37452 0.99138 1.23279 1.05853 1.02463 0.93216 1.20000 0.84551 0.86331 0.85601 1.90538 1.45901 1.26724 1.87521 1.41808 1.49578 1.23990 1.04550 1.19633 1.34719 1.08484 0.83800 0.90298 1.26050 0.96286 0.96063 1.02590 1.69657 1.38602 1.16957 1.30376 0.84982 0.78663 0.78141 0.76533 1.19704 1.19282 1.19706 1.19407 0.99785 0.94320 0.95200 1.20956 0.98107 0.94147 0.95710 1.21553 1.02115 1.01318 0.96541 1.18951 0.97644 0.93340 0.85336 1.86390 1.71499 1.21847 1.43668 1.19292 0.74719 0.79326 0.75055 1.93306 1.29471 1.95836 1.96022 1.93315 1.85872 1.85857 1.46053 1.93315 1.88470 1.77482 1.55705 1.20682 1.02877 0.90454 0.99868 1.21212 0.94115 1.01334 0.91618 0.89661 0.91833 0.91748 0.86226 0.86249 0.76654 0.91094 0.84868 0.84696 0.81919 0.81578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.92 71.98 0.64 -1.83 16 2 C -0.02 -0.46 3.01 29.85 0.09 -0.37 16 3 H 0.11 1.86 7.87 -2.39 -0.02 1.84 16 4 S -0.23 -7.33 19.89 -56.49 -1.12 -8.45 16 5 C -0.10 -3.24 6.12 71.24 0.44 -2.81 16 6 C 0.45 21.40 7.80 87.66 0.68 22.08 16 7 O -0.62 -35.07 15.44 -3.06 -0.05 -35.11 16 8 N -0.56 -28.54 5.29 -306.99 -1.62 -30.17 16 9 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 10 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 11 C -0.01 -0.50 5.50 84.92 0.47 -0.03 16 12 N -0.92 -48.39 13.05 21.66 0.28 -48.10 16 13 Si 0.99 42.43 29.55 68.60 2.03 44.46 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 17 C -0.09 -1.66 4.78 -19.85 -0.09 -1.75 16 18 C -0.07 -1.48 8.76 22.25 0.19 -1.29 16 19 C -0.20 -4.00 8.26 22.36 0.18 -3.81 16 20 C 0.09 1.71 6.48 22.51 0.15 1.85 16 21 O -0.31 -5.77 10.37 -92.44 -0.96 -6.73 16 22 C 0.61 10.35 3.42 113.37 0.39 10.74 16 23 F -0.16 -2.78 15.56 44.97 0.70 -2.08 16 24 F -0.13 -2.06 17.53 44.97 0.79 -1.27 16 25 F -0.17 -3.14 15.56 44.97 0.70 -2.44 16 26 C -0.12 -1.85 9.99 22.37 0.22 -1.63 16 27 C -0.06 -0.96 9.66 22.25 0.22 -0.75 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.18 7.40 -2.39 -0.02 1.17 16 30 H 0.06 1.10 6.92 -2.39 -0.02 1.08 16 31 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.12 3.37 7.14 -2.39 -0.02 3.36 16 33 H 0.40 18.91 7.90 -92.70 -0.73 18.18 16 34 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.13 2.91 7.59 -2.91 -0.02 2.89 16 36 H 0.14 2.59 5.10 -2.91 -0.01 2.58 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.17 1.56 7.94 -2.91 -0.02 1.53 16 Total: -1.00 -68.32 353.62 5.54 -62.78 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.40 Total: 24.87 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 4.39 Total: 2.23 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -1.34 Total: -78.27 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -1.01 Total: -41.84 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 2.19 Total: -5.79 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: -7.33 SS G_CDS: -1.12 Total: -8.45 kcal Total: -68.32 5.54 -62.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069777929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.845 kcal (2) G-P(sol) polarization free energy of solvation -68.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds